TCONS_00047428 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047428
Unique NameTCONS_00047428
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1738

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047428 ID=TCONS_00047428|Name=TCONS_00047428|organism=Clytia hemisphaerica|type=transcript|length=1738bp
ttTACTTCGAGTTGTCAAGGACGTTGAAACTAATGGAATAATGAGATGGA
GGTCAGTggtctaaatttttgaaagccTGTCTCAAAACTAGTTTATTGCA
TTCTGAAGCTGAAGGCAGAATTAACCAAATATCAAATGTTTGGAGATTAA
TAACCGCTNTATTTTGAAGCTGAAGGCAGAATTAACCAAATATCAAATGT
TTGGAGATTGATAACCGCTTGTAATGTTTTAACATTCTGAAACCTTACTG
TAAAGTTATTCTCTAGAAGATTTAGAAGTTTCCAAACGCCATCCAAAGAT
GTTGAGGTTACTGCTCACATTGACAGTCTTTTCAACATGGAATATGTTGG
AGGTGTTTGGTGAAGGTGAACAATCTCCTCCTGTCGTTCAACAATCAACA
AATATGTTCAACAACTTGACGTTAGAGACTTTCGAACAGTCAACAAAAGA
GAAAGATATAATGTTGGTTCTCTTCTTTGTACCATGGTGTCCACATTCTA
AAGCGATCCAACCAGAATGGGAGAAAGCATCAAATGTACTTGAACAACAA
AAGGAATATGTTCTTGGTCGAGTCAATTGTGAAGATAGTGGGAAAACACT
TTGTGAAAAATATGACGTCAAAAAATATCCGACAGTTAAGTTATTCCGAC
ATGGACAGTTCCAAGAAGATTTTGATGGCAGAAATGCAGATTCATTAATC
GATTTCGTACAAAGAGCACAATCAACAAACGGACCTGTTGGAACGACACC
AACGCCACCCTCTACTTCAACCACACAATCACCGCCACAGCAAACAGGGG
CGTCTCTGGTGAACAGTGAGCAACAAACACAACAACAGCCACAAGCACAA
GTTGTCACTCAATACCAATCAGCAGGTGAAAACGTGAACAGCCAACAGCA
GCAAGTTTCAGCGCCTGTTGTACAAACACAAAACCAACCCCAAATTGCAG
AAAATGCACCCGTAAATCCGCCCTCGAATCCGCCATCTAATACTCCAGCG
GGCGGAAATTCAATTCAAGGATTTCAATCCGAAAataaactttcacaaca
aaaagCAGGACCAAGTCTAATGTCTTTATATGAATCCGTCTCTAAAACTA
AAGGTGGGCCTCACCCTTTATACCCACAAACATTCCATTCACAAGGCCCC
GTTGGAACAGCTCCGGCCTCAATAAGCCAAGAACCTTTTATACCAAAGCG
AGATGCTGCCATTATGAATTACGTCATGAACCGACATGAAGAAATAAAAC
AATCACCGGGCGATTATCAGAGATTGGTAACTTCGAAAGATGTTGATCAA
ATGAAGAAATAAAACAATCACCGGGCGATTATCAGAGATTGGTAACTTCG
AAAGATGTTGATCAAATTAAGAAATATTACGAATGGAAATTCAAACAACT
GTCCTTACcagagaaagaaaaacaaaaacgtaTTGAACTTGGTTCTATGT
TACTGGGAGATAAACGCGCAAAAGACTAAACGCAAGCTGTACTAATACAT
TTTTCCATCTCCAATGATAACACAATGACGAAAGCTGAACATTTCTAGGA
CAACCTGAACAAAAATACGTTGTGAAAGGTGTGGTTTTTGAATTGGAATG
ATTTCAGAATTAATACGGCCTTAATCTTTTTATATTGATAGGACTTTTCA
TAAGTTATTTTGAGTTCAAACGACTGCcttgttttgaaacaattatcaag
gtgattaaatccctGGAGTCTTCAAGTgcgattttttt
Run BLAST on NCBI

transcript from alignment at scaffold_128:35133..40002+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047428 ID=TCONS_00047428|Name=TCONS_00047428|organism=Clytia hemisphaerica|type=transcript|length=4870bp|location=Sequence derived from alignment at scaffold_128:35133..40002+ (Clytia hemisphaerica)
ttTACTTCGAGTTGTCAAGGACGTTGAAACTAATGGAATAATGAGATGGA
GGTCAGTggtctaaatttttgaaagccTGTCTCAAAACTAGTTTATTGCA
TTCTGAAGCTGAAGGCAGAATTAACCAAATATCAAATGTTTGGAGATTAA
TAACCGCTNTATTTTGAAGCTGAAGGCAGAATTAACCAAATATCAAATGT
TTGGAGATTGATAACCGCTTGTAATGTTTTAACATTCTGAAACCTTACTG
TAAAGTTATTCTCTAGAAGATTTAGAAGTTTCCAAACGCCATCCAAAGAT
GTTGAGGTTACTGCTCACATTGACAGTCTTTTCAACATGGAATATGTTGG
AGGTGTTTGGTGAAGGTGAACAATCTCCTCCTGTCGTTCAACAATCAACA
AATATGTTCAACAACTTGACGTTAGAGACTTTCGAACAGTCAACAAAAGA
GAAAGATATAATGTTGGTTCTCTTCTTTGTACCATGGTGAGTCATCGAcc
gtttagatttttttaatctACTCCcagtggaggtcctataaataaACTGA
TGTTCGTTCGTCTTCAGAAATCTCCATTTTtccagattttcattggactt
tttccttatatttctttgttatttattttcacagaaaaacattattgata
acaatgctcaccatcaagcatgtttcaattgataataaactgatttttgc
aaccggaactttctatctattttttccttacaaccctttcctctcccccc
atcaacaatcaatgatgaaatttaatgcgcTATGCATTTTTGCTAAACGC
TTTATTTACTGActggttgttttcatttttctccttattgctatctaact
ttcatcatcaggtaggtccattcagcaccTAGCTTGTTTAATCTACTCCC
AGGTGTTTTAAGCAATAAGAGCACCCTCCCTGTTTGTTAATGTTATTTTT
GAGGGGGTTTTTAGAAGTACAAATTCTGTCCTGTAGCCCTCCTGTTTGTC
TTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATAG
Cttttctagatcgaaaataatcgagggtggtagattctacccccccctgg
ggatacaaaagtcaaaaaagcttggggctaatagggttaatacGGTTCTT
TCTTTCCCAGACAGGACAGATCCCATTGAGGATGGTTCTGCACTATAATG
CTATTAGTAATTAAGTAATTTAATCAAACATGCACTCGCTTCCTTGACTA
gtgataaacaaaaaatttccatttcgttcatttatttcaaatataGGTGT
CCACATTCTAAAGCGATCCAACCAGAATGGGAGAAAGCATCAAATGTACT
TGAACAACAAAAGGAATATGTTCTTGGTCGAGTCAATTGTGAAGATAGTG
GGAAAACACTTTGTGAAAAATATGACGTCAAAAAATATCCGACAGTTAAG
TTATTCCGACATGGACAGTTCCAAGAAGATTTTGATGGCAGAAATGCAGG
TTTgatgcttttttttataagaacatgtaaATTTTGTTTAAGGCTCGGCT
GTTCTCATTTTCACGAAGGGAGCTCTCAAAATCATCCCCAATCCCTTATT
AGTAATTtttgaggctcagattgttatCATTTTGTTCTTAGGGTTAGACC
AGATTTACCTAAAGAAATCATGAAGTTGGTCTCACAAAAACTAATGAATA
CAGATTTTAATTTGCTtggagttgaaaaatttcaaaattggttgAGCTTG
CGTCCATGAACAAATGGGTCTTTCTTGAATTTTGGCCTTTTGGTTTCGAT
AGATAATAGCTTTTATTGACTTTTTTGTtgagttacacgtttttttttta
ataaggaacacgtttataaggaactcgaggctgaaaatggtccaaaaaat
aaggaattgttaaggaactgctcaggctgagaataagaaaactagtttta
aggaatccaatttttgcgaatccaaacttagcagctatgtaaataaggaa
ctcgataaggaactttgaggctgaaattctctgtaaaaataaggaactcc
aggctcagagcaaagttaaggttccttataaaaaaaaaacgtgtaattgg
tTTTCACCCTGTCTCTTTTTCCTATTAGTACTTTTTGTAAATCTAGGAAA
CTAATTTCGGTGGGAACTTCTTTTGGCGGGCAGCAAAAATCctgaaaaga
atttaaattttgtGGAATAATTTCAGCGAATAGCAGGGTAAATTGGTTCA
TTTTTGCCTGTAAAATGAATCCGTtaggcaaaaattaagttttattttAG
AAAACGATGAAAAATCTAGTTTCGGCGAGGAACTTACTTTGCTAAGggag
taatttttttattttagcgataactaattttgaaGAATGAGTTGCCTTAA
AGATAAATTTAATgagataaaaaaatctttcagaaGTTTTTGATTTCTTC
AGATTCATTAATCGATTTCGTACAAAGAGCACAATCAACAAACGGACCTG
TTGGAACGACACCAACGCCACCCTCTACTTCAACCACACAATCACCGCCA
CAGCAAACAGGGGCGTCTCTGGTGAACAGTGAGCAACAAACACAACAACA
GCCACAAGCACAAGTTGTCACTCAATACCAATCAGCAGGTGGTGGGTTAC
TTACTCatacgtcaaaacaacgtttatttaacagcctaggctacgtcata
tatcttccttcgtttcaaaaactaaaaaagccTGGAGCTATCTTTGTATA
GATTATTAACAGCCATAATATTCATAGATTTTAGGATATACGATATACAT
TGAAACAGTATTGTTAATCAGTTTACCTATAAATAAACTAACAGTTATTT
CATCCTATTTTTTCTAGAGACTATCACACGGGAAAgcataaagcttttaa
tgccaATATAATCAGTGTAGTTTTTCCTGACAGTATTTATTCCTTTACTG
CCTTACTGTTAGAAACataaattttcctttatttCCTCTCTAGAAAACGT
GAACAGCCAACAGCAGCAAGTTTCAGCGCCTGTTGTACAAACACAAAACC
AACCCCAAATTGCAGAAAATGCACCCGTAAATCCGCCCTCGAATCCGCCA
TCTAATACTCCAGCGGGCGGAAATTCAATTCAAGGATTTCAATCCGAAAa
taaactttcacaacaaaaagCAGGACCAAGTCTAATGTCTTTATATGAAT
CCGTCTCTAAAACTAAAGGTGGGCCTCACCCTTTATACCCACAAACATTC
CATTCACAAGGCCCCGTTGGAACAGCTCCGGCCTCAATAAGCCAAGAACC
TTTTATACCAAAGCGAGATGCTGCCATTATGAATTACGTCATGAACCGAC
ATGAAGAAATAAAACAATCACCGGGCGATTATCAGAGATTGGTAACTTCG
AAAGATGTTGATCAAATCAAGAAATATTACGAATGGAAATTCAAACAACT
GTCCTTACcagagaaagaaaaacaaaaacgtaTTGAACTTGGTTCTATGT
TACTGGGAGATAAACGCGCAAAAGACTAAACGCAAGCTGTACTAATATAT
TTCTCCATCNTTCAAGGATTTCAATCCGAAAataaactttcacaacaaaa
agCAGGACCAAGTCTAATGTCTTTATATGAATCCGTCTCTAAAACTAAAG
GTGGGCCTCACCCTTTATACCCACAAACATTCCATTCACAAGGCCCCGTT
GGAACAGCTCCGGCCTCAATAAGCCAAGAACCTTTTATACCAAAGCGAGA
TGCTGCCATTATGAATTACGTCATGAACCGACATGAAGAAATAAAACAAT
CACCGGGCGATTATCAGAGATTGGTAACTTCGAAAGATGTTGATCAAATT
AAGAAATATTACGAATGGAAATTCAAACAACTGTCCTTACcagagaaaga
aaaacaaaaacgtaTTGAACTTGGTTCTATGTTACTGGGAGATAAACGCG
CAAAAGACTAAACGCAAGCTGTACTAATACATTTTTCCATCTCCAATGAT
AACACAATGACGAAAGCTGAACATTTCTAGGACAACCTGAACAAAAATAC
GTTGTGAAAGGTGTGGTTTTTGAATTGGAATGATTTCAGAATTAATACGG
CCTTAATCTTTTTATATTGATAGGACTTTTCATAAGTTATTTTGAGTTCA
AACGACTGCcttgttttgaaacaattatcaaggtgattaaatccctGGAG
TCTTCAAGTgcgattttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030209XLOC_030209Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047428-exon-scaffold_128-1491911889:35133..35618TCONS_00047428-exon-scaffold_128-1491911889:35133..35618Clytia hemisphaericaexon
TCONS_00047428-exon-scaffold_128-1510915933:35133..35618TCONS_00047428-exon-scaffold_128-1510915933:35133..35618Clytia hemisphaericaexon
TCONS_00047428-exon-scaffold_128-1575043694:35133..35618TCONS_00047428-exon-scaffold_128-1575043694:35133..35618Clytia hemisphaericaexon
TCONS_00047428-exon-scaffold_128-1491911889:37079..37281TCONS_00047428-exon-scaffold_128-1491911889:37079..37281Clytia hemisphaericaexon
TCONS_00047428-exon-scaffold_128-1510915933:37079..37281TCONS_00047428-exon-scaffold_128-1510915933:37079..37281Clytia hemisphaericaexon
TCONS_00047428-exon-scaffold_128-1575043694:37079..37281TCONS_00047428-exon-scaffold_128-1575043694:37079..37281Clytia hemisphaericaexon
TCONS_00047428-exon-scaffold_128-1491911889:38235..38423TCONS_00047428-exon-scaffold_128-1491911889:38235..38423Clytia hemisphaericaexon
TCONS_00047428-exon-scaffold_128-1510915933:38235..38423TCONS_00047428-exon-scaffold_128-1510915933:38235..38423Clytia hemisphaericaexon
TCONS_00047428-exon-scaffold_128-1575043694:38235..38423TCONS_00047428-exon-scaffold_128-1575043694:38235..38423Clytia hemisphaericaexon
TCONS_00047428-exon-scaffold_128-1491911889:38776..39197TCONS_00047428-exon-scaffold_128-1491911889:38776..39197Clytia hemisphaericaexon
TCONS_00047428-exon-scaffold_128-1510915933:38776..39197TCONS_00047428-exon-scaffold_128-1510915933:38776..39197Clytia hemisphaericaexon
TCONS_00047428-exon-scaffold_128-1575043694:38776..39197TCONS_00047428-exon-scaffold_128-1575043694:38776..39197Clytia hemisphaericaexon
TCONS_00047428-exon-scaffold_128-1491911889:39565..40002TCONS_00047428-exon-scaffold_128-1491911889:39565..40002Clytia hemisphaericaexon
TCONS_00047428-exon-scaffold_128-1510915933:39565..40002TCONS_00047428-exon-scaffold_128-1510915933:39565..40002Clytia hemisphaericaexon
TCONS_00047428-exon-scaffold_128-1575043694:39565..40002TCONS_00047428-exon-scaffold_128-1575043694:39565..40002Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_128supercontigscaffold_128:35133..40002 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.45585	1.07963	1.18598	1.87237	3.42734	0	0.826356	0	0.676239	2.74836	0.584366	1.41578	0	0	0.578343	0.851875	3.76147	0.582892	0.428534	0.997032	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047428 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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