TCONS_00047434 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047434
Unique NameTCONS_00047434
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2097

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047434 ID=TCONS_00047434|Name=TCONS_00047434|organism=Clytia hemisphaerica|type=transcript|length=2097bp
ttagaaacataaaaaatgacataagggTAATCTTTAAGAAATAATTGAAC
CATAAATCCATAACAATGGCGTCAGCAGATGTTGGCGATAACGTTTCATC
CAAACTGTTCTTTTGCCATGTTTGCTCACAAGAAGTCGGTGCAACTGAGG
ACTTGACATGTGCAATCTGCAGTTCTGGTGCAATTGAAGAACTTGAAACT
ATCAACACATCCCAAGAacccacTCAAAACCAAGAACATGATGAACAGGA
CGATTTTGTAAGTTTTTGGGACAACATGAGCAGAGGACGCAGGAGAAGAG
CACACAGTTATGGTTTACGACAAAGCACCAATCAAATTCCCAGGCGACGT
CCACAAGTCATGGTGCATATTGGTTCACCAAATAATTCATTCCAAATGCA
CAGCACAAGCAGTGGTGGACCTGATCTTGATATGTTTGTTCAACAGCTCT
TTGGTAACCTAGGTGTGCAATTCTCACGGAATGGCTTTTCTGCAATGCCT
ATGGGAGGCAATGGAATGGGTTTTGCTGGGAATTTAGGAGATTATGCTTG
GGGACCAAGCGGATTGGATAATATCATTACACAATTGCTAAATCAGTTGG
ATAATTCTGGTCCTCCGCCTGCTGAACGAACTAAAATTGACTCACTACCT
ATTTATGAAATCACTCAAAAGGACCTAGACGAAAAATCAGAATGTGCAGT
ATGTCAAGATCAATTTCAATTGAGTGAAAAGGTCAAACAACTTCCATGTA
AACACAACTTTCATACGCCATGCATTGAACCTTGGCTAGAAATGCACGAC
TCTTGTCCAATATGTCGAATGAATTTGAATGGTGAACGATCACGTGATGA
CAGATAACCCAATCATGATTCGAGTTGACTGAGGGGATAGCCAATCAAAT
ATTGAGTTGATCGGATACACAACCAATCATATTTCGAGTTGTTGTGATTG
AAAGGAGAAGGATGCGTTTGTAAAGGGTACCTGTTGAGGTGTCAGACGGA
GATAAGTGTGGTATTATCATGGTGACTTTCTTGCCACCAGCTAACGTGTA
TCAATTAAGAACATAACTTAATCAAATAAAatacttgaaatggaaattgT
CGATCTTCAGATAGAATGGTATCGAACAACTGAATTTTTTTCGTGAACAA
AAACATACGACAAAATATCGGAACATTCGTTCTCTGAAAGAATCAATACC
TTTGAAGGTTAAAACTCCGATAAAGACGGTTGCTTTACGCAAGTTACAAA
CGTTAACCTAAAAGTCAAATATTTTAGATAGTGAGACTTTCTTAATACCA
TCATAACATCCTGGAGTGTATCAACTCCTTGTTCTGCCTTATTAGTAAAA
AGTCAAAAGGTTAGTCTAtattaaaatgaatttttacaGGGATTTTGCTC
TCTGGCCAAATCTtaattttcaaacattcttCACTTTTTGTTGTTTAGTT
TATCTACCCCTCCTTGCCTTTTTTGGCAATCAGTATTAGCTATTTATGTA
TCTTGACATCGAGTTTTCCCTTTTAAGccgttttgtttttgtgtttaaaA
AGAGCATGCACTTTGTATTGTTAGTTTTATGTTAAAATTGTAACTCGGAC
AAAAATGATCACGGTATTTTAAGacattcttctttttcttcttcatgtcc
caccaagatttttttgaagatgCTAGCcttttagaacaacaaatttcttt
catccCAAGGAGTACAAATTGCCAGTCAGTGCCGGTGACTCATATTATCT
ATTAAGCTTGGCGAACACTATTGCAAGGGACTATTTCGGCTGTATTTGTA
TCAACGATTACGACAAATTGTTCTGTTTTTTTAAGTTTGGagcttttgtt
tttttagtgCTAGGTCAATAATACAGAATcgtaaaaaattggaaaaacgt
TGTTCATTATTTTAGAAGATTTATTTTGTCcataaaatatcataaatttt
ttgaatgtaaattttatagcaataattttattacaagtttaTTAATGTAA
AAATTAAACCCCCTTTTTTGTTCGTTAAAAATTCCctttaaaaaatttaa
catctatattaattttttaaatgaaatagaCCATTTCCCATACTGCA
Run BLAST on NCBI

transcript from alignment at scaffold_128:69054..73911+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047434 ID=TCONS_00047434|Name=TCONS_00047434|organism=Clytia hemisphaerica|type=transcript|length=4858bp|location=Sequence derived from alignment at scaffold_128:69054..73911+ (Clytia hemisphaerica)
ttagaaacataaaaaatgacataagggTAATCTTTAAGAAATAATTGAAC
CATAAATCCATAACAATGGCGTCAGCAGATGTTGGCGATAACGTTTCATC
CAAACTGTTCTTTTGCCATGTTTGCTCACAAGAAGTCGGTGCAACTGAGG
TaaatacaaaattttcatttccaaTAATTTTTAACCATCACAGTAAAAAG
TGGGCAGAATATCAGGTTAAGAAAAGCTATCATGCTCAAAAGGGGTCAAA
CACtcaaaatacatttttcacACCCTGGTAATCTGAATTTTCCTGTTACA
ATGTACTAATTACTATGTGATTGTACTTTGCAGTaccatgatttaaaaaa
aaatttacatcagAAAACCATTATCAAGTGCTTTTGGATTTCAAAAAGTa
gaattaattatttttattcCTTGATTGCATAACTCCCAGAAAGTTAGCTA
TGTTTTCCAGGCCGTCTTATTTTTGTAAAACTGTTGATATCTTTAGGACT
TGACATGTGCAATCTGCAGTTCTGGTGCAATTGAAGAACTTGAAACTATC
AACACATCCCAAGAGTAataattatcatgtttttagtttttatatCATCA
TCACcagtcattttattttttttagtcaCAATGAATaggccaaaaaaaat
tcaattcatgGGTATTTGTAACTGAAGCATTATTTATGATAGAATTCTTT
AATGGTGATGATGAGAGGTCTCTGATTGACACAGTTTCAGAGTTGAAAGc
ctgcaattataatttttctaTATCTCTCTATGATGTACTGcttatttttg
ataattattgTCTAATTTAGATATTTCACctgtatttttttcagacccac
TCAAAACCAAGAACATGATGAACAGGACGATTTTGTAAGTGTAAGTGTTG
AATGAAACAAAGTCAAAACGTTTTAAATTGGTGACCTAATTGATGATAGC
ATTACAATTTTATTTATGCAAATTCTTTCTGTCCAttacttttttgttta
taatataGACTATAATAATGATTGTATTTTTTAAACTACTATAGGATGGC
TATTCTCATTCTTAGGGAAACTCTCCTGGTGCTTTTACGGGATCTGTCTG
TTATTCTATTCCAGGCATACCAGCTGGGGGAGTTTTCGTTGTAAAGTGGC
AATAGGAAATTTTTTCCGGTaatgaaaaagtttacaaaaccTCCTGTTAA
TTGAAGGATGATCGTGTCATGAACAATTACCctaattatatattatattg
aaAACAGAAACAGTTATATCTATAATGCTTTTGATCTTTTGTGTTCTCTT
TAGTTTTGGGACAACATGAGCAGAGGACGCAGGAGAAGAGGTActtcaat
tcaaaaattgcaaatttcaaATGTATTTTGTATTTACTCTGTATTTACCT
ATCATAAAttcttttattaatttctttcaatttttctatttccaacctaa
aattttatattCTTCTATTTACAGCACACAGTTATGGTTTACGACAAAGC
ACCAATCAAATTCCCAGGCGACGTCCACAAGTCATGGTGCATATTGGTTC
ACCAAATAATTCATTCCAAATGCACAGCACAAGCAGTGGTGGACCTGATC
TTGATATGTTTGTTCAACAGCTCTTTGGTAACCTAGGTGTGCAATTCTCA
CGGAATGGCTTTTCTGCAATGCCTATGGGAGGCAATGGAATGGGTTTTGC
TGGGAATTTAGGAGATTATGCTTGGGGACCAAGCGGATTGGATAATATCA
TTACACAATTGCTAAATCAGTTGGATAATTCTGGTCCTCCGCCTGCTGAA
CGAACTAAAATTGACTCACTACCTATTTATGAAATCACTCAAAAGGACCT
AGGTATGTTGTATTTGTGTAGATTCTGCATAATACCATCTCTTTTTGCAA
TTAAGAGGCTGCTTGCATATTAACTGCCATGAAATAACAAAACTTAAAGA
ACAACACCTTTATCCGTGACCCGATGATGTTATTTAAGTCAGCGAGAATG
AAATTAAGCTAAACAGGGAAGAGAAATTGCCTGTTTGAATGGGTGGGGAT
TTCTAGTTTTATTGATTACAGGGGATTCTTTGAAATTATTATCATTGGCT
TTCCTAATGGTAATGGGAATGAGAGGTcattgtgtatattttttttcagt
ggagGAAATGTCCGTTTCAGTGCGCCTCTATACTGTCAAAGCAGAACGAA
CaagaaaatttcttaaaatttgtgCTCACTGGGATCTGAAAATGGAGTAA
ATAATTAAATGTAGCCCTTAATGTAGCCCTTTAAATATTGATTTCATTTC
TCGTAGACGAAAAATCAGAATGTGCAGTATGTCAAGATCAATTTCAATTG
AGTGAAAAGGTCAAACAACTTCCATGTAAACACAACTTTCATACGCCATG
CATTGAACCTTGGCTAGAAATGgtaagatttttctttttatctattctct
caatattttattttttaaagaaaagcaGTTCTGATAATGTATTTGTTTGT
CATCGAAGGATGTTGTCTGGGACAAGCATTACTACAAGAGATATACATGG
ATTTCGAATTAGCTCTGTAAGAAAAGTCTCCTTCAGATCGAGATACAGTA
ATAAAATCTTcctaaaaactcaaaatcatCAATTTAACCATTTTTGCAAT
CATTCATTATAGACATAAATGAACAAACACAATATGCAAAGGTGCACAGT
TTTTGGCCAATCAGAGAGTTCACTATAATTTTTCCGAGAATTAattctaa
agtctgttcacgatataagtgtgcactcttttttcttttacccaTAAACT
Ttcgaaggaattcttcaatctttataaaatttggtatcgttggagagata
ctTGTGAGCGGaacaatttgaaagaaaaatgtctttagaaaaattctaaa
aacgaagacaaaaatgaagaagaaaaaaatgaagattttgtagagaagtg
ctataactttcatttttactggaGAGATTTTTGATCTTAGGAAATCATCA
CTgtaaagaaatttcactaaaatatttattcaagataaagttatgataca
aagttaataagtgattgaccccaaaaaaacagcagaaaacagcagaaaac
agcgttttttgacgtcaatcagcttataactttgtttgatatcttttgac
tgaatgattatttttgagaaatcttttcacagtgatgacgttcgacgATC
AAGGAtttacttcagtgaaaatgatagttatagcagtTTTCtacaagatt
ttcatttttttcttcttcattttcatcttcatttttagaatttttttata
gatttctttattccaaattgttccactcactaatatctttccaatgacac
caaatttataaagattgaagaatttcttctaaagttataggtaaaagaaa
aaagagtgcacacttatcgtgaatagactttaattccTTGTATTTTTTTG
GAGTTTATGAGACTATAACTTAATATAAAGATTCTTCTACTTATTTTACA
GCACGACTCTTGTCCAATATGTCGAATGAATNTGATTCTTTTACTTATTT
TACAGCACGACTCTTGTCCAATATGTCGAATGAATTTGAATGGTGAACGA
TCACGTGATGACAGATAACCCAATCATGATTCGAGTTGACTGAGGGGATA
GCCAATCAAATATTGAGTTGATCGGATACACAACCAATCATATTTCGAGT
TGTTGTGATTGAAAGGAGAAGGATGCGTTTGTAAAGGGTACCTGTTGAGG
TGTCAGACGGAGATAAGTGTGGTATTATCATGGTGACTTTCTTGCCACCA
GCTAACGTGTATCAATTAAGAACATAACTTAATCAAATAAAatacttgaa
atggaaattgTCGATCTTCAGATAGAATGGTATCGAACAACTGAATTTTT
TTCGTGAACAAAAACATACGACAAAATATCGGAACATTCGTTCTCTGAAA
GAATCAATACCTTTGAAGGTTAAAACTCCGATAAAGACGGTTGCTTTACG
CAAGTTACAAACGTTAACCTAAAAGTCAAATATTTTAGATAGTGAGACTT
TCTTAATACCATCATAACATCCTGGAGTGTATCAACTCCTTGTTCTGCCT
TATTAGTAAAAAGTCAAAAGGTTAGTCTAtattaaaatgaatttttacaG
GGATTTTGCTCTCTGGCCAAATCTtaattttcaaacattcttCACTTTTT
GTTGTTTAGTTTATCTACCCCTCCTTGCCTTTTTTGGCAATCAGTATTAG
CTATTTATGTATCTTGACATCGAGTTTTCCCTTTTAAGccgttttgtttt
tgtgtttaaaAAGAGCATGCACTTTGTATTGTTAGTTTTATGTTAAAATT
GTAACTCGGACAAAAATGATCACGGTATTTTAAGacattcttctttttct
tcttcatgtcccaccaagatttttttgaagatgCTAGCcttttagaacaa
caaatttctttcatccCAAGGAGTACAAATTGCCAGTCAGTGCCGGTGAC
TCATATTATCTATTAAGCTTGGCGAACACTATTGCAAGGGACTATTTCGG
CTGTATTTGTATCAACGATTACGACAAATTGTTCTGTTTTTTTAAGTTTG
GagcttttgtttttttagtgCTAGGTCAATAATACAGAATcgtaaaaaat
tggaaaaacgtTGTTCATTATTTTAGAAGATTTATTTTGTCcataaaata
tcataaattttttgaatgtaaattttatagcaataattttattacaagtt
taTTAATGTAAAAATTAAACCCCCTTTTTTGTTCGTTAAAAATTCCcttt
aaaaaatttaacatctatattaattttttaaatgaaatagaCCATTTCCC
ATACTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030210XLOC_030210Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047434-exon-scaffold_128-1491911889:69054..69202TCONS_00047434-exon-scaffold_128-1491911889:69054..69202Clytia hemisphaericaexon
TCONS_00047434-exon-scaffold_128-1510915933:69054..69202TCONS_00047434-exon-scaffold_128-1510915933:69054..69202Clytia hemisphaericaexon
TCONS_00047434-exon-scaffold_128-1575043694:69054..69202TCONS_00047434-exon-scaffold_128-1575043694:69054..69202Clytia hemisphaericaexon
TCONS_00047434-exon-scaffold_128-1491911889:69550..69617TCONS_00047434-exon-scaffold_128-1491911889:69550..69617Clytia hemisphaericaexon
TCONS_00047434-exon-scaffold_128-1510915933:69550..69617TCONS_00047434-exon-scaffold_128-1510915933:69550..69617Clytia hemisphaericaexon
TCONS_00047434-exon-scaffold_128-1575043694:69550..69617TCONS_00047434-exon-scaffold_128-1575043694:69550..69617Clytia hemisphaericaexon
TCONS_00047434-exon-scaffold_128-1491911889:69898..69943TCONS_00047434-exon-scaffold_128-1491911889:69898..69943Clytia hemisphaericaexon
TCONS_00047434-exon-scaffold_128-1510915933:69898..69943TCONS_00047434-exon-scaffold_128-1510915933:69898..69943Clytia hemisphaericaexon
TCONS_00047434-exon-scaffold_128-1575043694:69898..69943TCONS_00047434-exon-scaffold_128-1575043694:69898..69943Clytia hemisphaericaexon
TCONS_00047434-exon-scaffold_128-1491911889:70357..70393TCONS_00047434-exon-scaffold_128-1491911889:70357..70393Clytia hemisphaericaexon
TCONS_00047434-exon-scaffold_128-1510915933:70357..70393TCONS_00047434-exon-scaffold_128-1510915933:70357..70393Clytia hemisphaericaexon
TCONS_00047434-exon-scaffold_128-1575043694:70357..70393TCONS_00047434-exon-scaffold_128-1575043694:70357..70393Clytia hemisphaericaexon
TCONS_00047434-exon-scaffold_128-1491911889:70528..70905TCONS_00047434-exon-scaffold_128-1491911889:70528..70905Clytia hemisphaericaexon
TCONS_00047434-exon-scaffold_128-1510915933:70528..70905TCONS_00047434-exon-scaffold_128-1510915933:70528..70905Clytia hemisphaericaexon
TCONS_00047434-exon-scaffold_128-1575043694:70528..70905TCONS_00047434-exon-scaffold_128-1575043694:70528..70905Clytia hemisphaericaexon
TCONS_00047434-exon-scaffold_128-1491911889:71360..71475TCONS_00047434-exon-scaffold_128-1491911889:71360..71475Clytia hemisphaericaexon
TCONS_00047434-exon-scaffold_128-1510915933:71360..71475TCONS_00047434-exon-scaffold_128-1510915933:71360..71475Clytia hemisphaericaexon
TCONS_00047434-exon-scaffold_128-1575043694:71360..71475TCONS_00047434-exon-scaffold_128-1575043694:71360..71475Clytia hemisphaericaexon
TCONS_00047434-exon-scaffold_128-1491911889:72609..73911TCONS_00047434-exon-scaffold_128-1491911889:72609..73911Clytia hemisphaericaexon
TCONS_00047434-exon-scaffold_128-1510915933:72609..73911TCONS_00047434-exon-scaffold_128-1510915933:72609..73911Clytia hemisphaericaexon
TCONS_00047434-exon-scaffold_128-1575043694:72609..73911TCONS_00047434-exon-scaffold_128-1575043694:72609..73911Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_128supercontigscaffold_128:69054..73911 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.69508e-07	3.25677e-07	0.25947	3.15926e-08	0.838724	0.014006	3.97456e-06	0	3.64922	2.80868	2.87302	2.95199	0.00507368	1.36033	1.23994e-05	1.02609	1.00841	1.23167	2.15447	6.27343	0.00340184	0.00492868	0.0967528	0.0390661	0	0	0.750107	3.67002	6.8196	3.49227
Blast
[Close]
BLAST of TCONS_00047434 vs. Swiss-Prot (Human)
Match: RN115 (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.587e-38
Identity = 95/267 (35.58%), Postives = 135/267 (50.56%), Query Frame = 3 
Query:  108 FFCHVCSQEVGAT-EDLTCAICSSGAIEELE----------------TINTSQEPTQNQEHDEQ-DDFVSFWDNMSRGRRRRAHSYGLRQSTNQIPRRRPQVMVHIGSPNNSFQMHSTSSGGPDLDMFVQQLFG----NLGVQFSRNGFSXXXXXXXXXXXXXXXXDYAWGPSGLDNIITQLLNQLDNSGPPPAERTKIDSLPIYEITQKDLDEKSECAVCQDQFQLSEKVKQLPCKHNFHTPCIEPWLEMHDSCPICRMNLNGERS 842
            FFCH C  EV     +  C  C SG IEE+                 T     E   + +H     DF  F  +    +  RA+  G +  T+    R P++ +     +        S   P ++  +Q +F     N  +  S + FS   M  +  G      DYAWG +GLD I+TQLL QL+N+GPPPA++ KI SLP   +TQ+ +D   EC VC++ + + E+V+QLPC H FH+ CI PWLE+HD+CP+CR +LNGE S
Sbjct:   20 FFCHFCKGEVSPKLPEYICPRCESGFIEEVTDDSSFLGGGGSRIDNTTTTHFAELWGHLDHTMFFQDFRPFLSSSPLDQDNRANERGHQTHTDFWGARPPRLPLGRRYRSRGSSRPDRS---PAIEGILQHIFAGFFANSAIPGSPHPFSWSGMLHSNPG------DYAWGQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDS 277
The following BLAST results are available for this feature:
BLAST of TCONS_00047434 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN1151.587e-3835.58E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens... [more]
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