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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047447 ID=TCONS_00047447|Name=TCONS_00047447|organism=Clytia hemisphaerica|type=transcript|length=1939bp
gtttaatTTCAAAAGTGTTGGATCTATACAAATTAGTGCATTATTTGACT
ACAAATAGTTACTACATATTATATTCAAAAAATATCCATACAAACTAGTG
CATTATTTGACTAAAAATAGTTAATGCATAGATTCAAAAAATATCCATAC
AAACTAGTGCATTATTTGACTACAAATAGTTACTACATAGATTCAAAAAT
ATCCATACAAATTAGTGCATTATTTGCAGTTATTTGACTACAAATAGTTA
ATACATAGATTCAAAAAATATCCATACAAACTAGTGCAGTTATTTGACTA
CAAATAGTTAATACATAGATTCAAAAATATCCATACAAACTAGTGCATTA
TTTGACTACAAATAGTTAATACATAGATTCAAAAAATATCCATACAAACT
AGTGCAGTTATTTGACTACAAATAGTTAATACATAGATTCAAAAAATATC
CATACAAACTAGTGCATTATTTGACTACAAATAGTTACTACATAGATTCG
AAAAATATCCATACAAACTAGTGCATTATTAGACTACAAATAGTTACTAC
ATAGATTCAAAAAATATCCATACAAACTAGTGCATTATTTGACAGCAAAT
AGTTACTACATAGATTCGAAAAATATCCATACAAACTATTGCATTATTAG
ACTACAAATAGTTACTACATAGATTCAAAAAATATCCATACAAATCAGTG
CATTATTTGACTACAAATAGTTAATACATAGATTCAAAAAATATCCATAC
AAACTAGTGCATTATTAGACTACAAATAGTTACTACATAGATTCAAAAAA
TATCCATACAAACTAGTGCATTATTTGACTACAAATAGTTACTACATAGA
TTCGAAAAATATCCATACAATCTATTGCATTATTAGACTACAAATAGTTA
CTACATAGATTCAAAAAATATCCATACAAATCAGTGCATTATTTGACTAC
AAATAGTTACTACATAGATTCAAAAAATATCCATACAAATCAGTGCATTA
TTTGACTACAAATAGTTAATACATAGATTCAAAAAATATCCATACAAATC
AGTGCATTTGTTGCCTATAATAAATACTTAATAATAAATTATTCCCAAAA
TTAGTGACAATATTTTTAGTGCATTTGATGCATTTTGATTATCATTGAAA
ATGTGCTTTTTAAAAGTTAACCCATGATCGTTTTAGCAGTCCCTTTAAAA
ATAGTACGTTGCCAGCCCTTTCAATATAATTGACAAAGAACAATATAATC
AATTCAACTTTTTAGATTTCTTCTCTCCATCAACCTTCTTCTGTTCACCA
ATCAATGAAAAGATAAATCCAAGCAATAACAAAGCCGCCTTGATAACATT
TAGATGTTTTCCTGGCGGTGTTTTTCGTATATTCTCCCAGGAGCTGTACG
TATTCATTATGTAAGCAGGCATATTCTTTGAAAGATCATTGATGATATCC
GCATGAATATTTGCAAATGTAATCGATCTCATAATGAAACTTATCGCCAG
GAAGAACCTAGTGACAAACAAATCAACATCAATAAGGAATGGAACCATCA
TTGCAAAACCTATGATAATGCTTTCTCCACCCCAAATCGATGTAATCATA
GCCATAGCTGTCATGGCGTTGTTATCATCTTTGATACCAAATCCTGTAGA
TAAACCACTAATATAATGGTGACAATCATAAGGGTACACAAAATGAACAA
ACCCACCCATAAGTTCATGAAACATGGCACAAAACAAGATGGTACTAGCA
AGTTTGGCAGAAAAGGTGTTGACAAaattgctttttcttttgatattgta
aATGAGTACACAAAGAGACAAACCACCAGAAAATGCCAATCCAGACACAA
GCATCTTCTTGAGTTCAGGCGAGGCCATTTTTGTTCTTATGCACTAAAAA
ATAAGCTTTTTTTGTATGTTGGTTAAGGAAAGGTACCTT Run BLAST on NCBI transcript from alignment at scaffold_128:66665..68659- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047447 ID=TCONS_00047447|Name=TCONS_00047447|organism=Clytia hemisphaerica|type=transcript|length=1995bp|location=Sequence derived from alignment at scaffold_128:66665..68659- (Clytia hemisphaerica)
GTTTAATTTCAAAAGTGTTGGATCTATACAAATTAGTGCATTATTTGACT
ACAAATAGTTACTACATATTATATTCAAAAAATATCCATACAAACTAGTG
CATTATTTGACTAAAAATAGTTAATGCATAGATTCAAAAAATATCCATAC
AAACTAGTGCATTATTTGACTACAAATAGTTACTACATAGATTCAAAAAT
ATCCATACAAATTAGTGCATTATTTGCAGTTATTTGACTACAAATAGTTA
ATACATAGATTCAAAAAATATCCATACAAACTAGTGCAGTTATTTGACTA
CAAATAGTTAATACATAGATTCAAAAATATCCATACAAACTAGTGCATTA
TTTGACTACAAATAGTTAATACATAGATTCAAAAATATCCATACAAATTA
GTGCATTATTTGCAGTTATTTGACTAACATAGATTCAAAAAATATCCATA
CAAACTAGTGCAGTTATTTGACTACAAATAGTTAATACATAGATTCAAAA
AATATCCATACAAACTAGTGCATTATTTGACTACAAATAGTTACTACATA
GATTCGAAAAATATCCATACAAACTAGTGCATTATTAGACTACAAATAGT
TACTACATAGATTCAAAAAATATCCATACAAACTAGTGCATTATTTGACA
GCAAATAGTTACTACATAGATTCGAAAAATATCCATACAAACTATTGCAT
TATTAGACTACAAATAGTTACTACATAGATTCAAAAAATATCCATACAAA
TCAGTGCATTATTTGACTACAAATAGTTAATACATAGATTCAAAAAATAT
CCATACAAACTAGTGCATTATTAGACTACAAATAGTTACTACATAGATTC
AAAAAATATCCATACAAACTAGTGCATTATTTGACTACAAATAGTTACTA
CATAGATTCGAAAAATATCCATACAATCTATTGCATTATTAGACTACAAA
TAGTTACTACATAGATTCAAAAAATATCCATACAAATCAGTGCATTATTT
GACTACAAATAGTTACTACATAGATTCAAAAAATATCCATACAAATCAGT
GCATTATTTGACTACAAATAGTTAATACATAGATTCAAAAAATATCCATA
CAAATCAGTGCATTTGTTGCCTATAATAAATACTTAATAATAAATTATTC
CCAAAATTAGTGACAATATTTTTAGTGCATTTGATGCATTTTGATTATCA
TTGAAAATGTGCTTTTTAAAAGTTAACCCATGATCGTTTTAGCAGTCCCT
TTAAAAATAGTACGTTGCCAGCCCTTTCAATATAATTGACAAAGAACAAT
ATAATCAATTCAACTTTTTAGATTTCTTCTCTCCATCAACCTTCTTCTGT
TCACCAATCAATGAAAAGATAAATCCAAGCAATAACAAAGCCGCCTTGAT
AACATTTAGATGTTTTCCTGGCGGTGTTTTTCGTATATTCTCCCAGGAGC
TGTACGTATTCATTATGTAAGCAGGCATATTCTTTGAAAGATCATTGATG
ATATCCGCATGAATATTTGCAAATGTAATCGATCTCATAATGAAACTTAT
CGCCAGGAAGAACCTAGTGACAAACAAATCAACATCAATAAGGAATGGAA
CCATCATTGCAAAACCTATGATAATGCTTTCTCCACCCCAAATCGATGTA
ATCATAGCCATAGCTGTCATGGCGTTGTTATCATCTTTGATACCAAATCC
TGTAGATAAACCACTAATATAATGGTGACAATCATAAGGGTACACAAAAT
GAACAAACCCACCCATAAGTTCATGAAACATGGCACAAAACAAGATGGTA
CTAGCAAGTTTGGCAGAAAAGGTGTTGACAAAATTGCTTTTTCTTTTGAT
ATTGTAAATGAGTACACAAAGAGACAAACCACCAGAAAATGCCAATCCAG
ACACAAGCATCTTCTTGAGTTCAGGCGAGGCCATTTTTGTTCTTATGCAC
TAAAAAATAAGCTTTTTTTGTATGTTGGTTAAGGAAAGGTACCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047447-exon-scaffold_128-1575043694:68288..68659 | TCONS_00047447-exon-scaffold_128-1575043694:68288..68659 | Clytia hemisphaerica | exon |
| TCONS_00047447-exon-scaffold_128-1575043694:66665..68231 | TCONS_00047447-exon-scaffold_128-1575043694:66665..68231 | Clytia hemisphaerica | exon |
| TCONS_00047447-exon-scaffold_128-1510915933:68288..68659 | TCONS_00047447-exon-scaffold_128-1510915933:68288..68659 | Clytia hemisphaerica | exon |
| TCONS_00047447-exon-scaffold_128-1510915933:66665..68231 | TCONS_00047447-exon-scaffold_128-1510915933:66665..68231 | Clytia hemisphaerica | exon |
| TCONS_00047447-exon-scaffold_128-1491911889:68288..68659 | TCONS_00047447-exon-scaffold_128-1491911889:68288..68659 | Clytia hemisphaerica | exon |
| TCONS_00047447-exon-scaffold_128-1491911889:66665..68231 | TCONS_00047447-exon-scaffold_128-1491911889:66665..68231 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_128 | supercontig | scaffold_128:66665..68659 - |
Blast
The following BLAST results are available for this feature:
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