TCONS_00047458 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047458
Unique NameTCONS_00047458
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length295

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047458 ID=TCONS_00047458|Name=TCONS_00047458|organism=Clytia hemisphaerica|type=transcript|length=295bp
AAATTTTGAGGGAAGGAAGACTGCATTCCTTTTTTCCATTTCTGATAGTG
GGGCTTGAATTCAACTTCCAAGATGGAGCTAAATCTTCAGGTTTGTCAAT
ACCCATGGTGAACAAAAATGGAATAACTAGGTGTGTTATataattttttg
cttgtttggttaattgaataacaaaaatccaatttttcctTCACAGATTG
TTCACATTTCCCACTGAAAGAGAAAATCCGGAAGCGAGAATGATTTGGCG
AGAACTGATTAATCGCAGGGAaccatcaaataaaaatttgttgtg
Run BLAST on NCBI

transcript from alignment at scaffold_128:111627..111921

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047458 ID=TCONS_00047458|Name=TCONS_00047458|organism=Clytia hemisphaerica|type=transcript|length=295bp|location=Sequence derived from alignment at scaffold_128:111627..111921 (Clytia hemisphaerica)
cacaacaaatttttatttgatggtTCCCTGCGATTAATCAGTTCTCGCCA
AATCATTCTCGCTTCCGGATTTTCTCTTTCAGTGGGAAATGTGAACAATC
TGTGAaggaaaaattggatttttgttattcaattaaccaaacaagcaaaa
aattatATAACACACCTAGTTATTCCATTTTTGTTCACCATGGGTATTGA
CAAACCTGAAGATTTAGCTCCATCTTGGAAGTTGAATTCAAGCCCCACTA
TCAGAAATGGAAAAAAGGAATGCAGTCTTCCTTCCCTCAAAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030226XLOC_030226Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047458-exon-scaffold_128-1491911889:111627..111921TCONS_00047458-exon-scaffold_128-1491911889:111627..111921Clytia hemisphaericaexon
TCONS_00047458-exon-scaffold_128-1510915933:111627..111921TCONS_00047458-exon-scaffold_128-1510915933:111627..111921Clytia hemisphaericaexon
TCONS_00047458-exon-scaffold_128-1575043694:111627..111921TCONS_00047458-exon-scaffold_128-1575043694:111627..111921Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_128supercontigscaffold_128:111627..111921 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.411543	0.572173	1.02761	0	16.7681	11.9583	11.0012	14.7632	4.41952	1.97627	2.77711	3.83141	3.61527	0.890603	0	2.0122	0.308944	2.36057	0.489962	1.19351	0.795807	1.97211	0.658345	1.034	3.09299	4.12818	1.69292	1.20449	1.05066	0.465388
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047458 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top