TCONS_00047460 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047460
Unique NameTCONS_00047460
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047460 ID=TCONS_00047460|Name=TCONS_00047460|organism=Clytia hemisphaerica|type=transcript|length=316bp
GTTACAAAGCAAGTTTACAGGAAAAGGCTAACAGTGAAGCAAAGGATGcc
ttgaaagaaaaaagagaacTTCTTCAAAGAGAGATTGATGAGCTTGTTGC
AAAGGAatctaaaatcaaaaagactTGCCAGTCACTCGACAGTGATTTCG
TCAATCTAGTCAGTGAGGCAGAAAAACGCCCAAACTGAAATGGTCTCTTT
GGTCTCTCTCTGATTACTAAGGCTAATGCTTTAAAAAGAAGACAGAATGA
ACTCAATGAGGACCTCGATGACTTGCATACACAAATAGAAGCAAAACGCC
AAAAACTTAAGTAGAT
Run BLAST on NCBI

transcript from alignment at scaffold_128:133148..133463

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047460 ID=TCONS_00047460|Name=TCONS_00047460|organism=Clytia hemisphaerica|type=transcript|length=316bp|location=Sequence derived from alignment at scaffold_128:133148..133463 (Clytia hemisphaerica)
ATCTACTTAAGTTTTTGGCGTTTTGCTTCTATTTGTGTATGCAAGTCATC
GAGGTCCTCATTGAGTTCATTCTGTCTTCTTTTTAAAGCATTAGCCTTAG
TAATCAGAGAGAGACCAAAGAGACCATTTCAGTTTGGGCGTTTTTCTGCC
TCACTGACTAGATTGACGAAATCACTGTCGAGTGACTGGCAagtcttttt
gattttagatTCCTTTGCAACAAGCTCATCAATCTCTCTTTGAAGAAgtt
ctcttttttctttcaaggCATCCTTTGCTTCACTGTTAGCCTTTTCCTGT
AAACTTGCTTTGTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030228XLOC_030228Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047460-exon-scaffold_128-1491911889:133148..133463TCONS_00047460-exon-scaffold_128-1491911889:133148..133463Clytia hemisphaericaexon
TCONS_00047460-exon-scaffold_128-1510915933:133148..133463TCONS_00047460-exon-scaffold_128-1510915933:133148..133463Clytia hemisphaericaexon
TCONS_00047460-exon-scaffold_128-1575043694:133148..133463TCONS_00047460-exon-scaffold_128-1575043694:133148..133463Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_128supercontigscaffold_128:133148..133463 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.662999	1.03509	0.375341	0.367213	0.894092	0.706523	2.98337	4.38899	1.28824	1.03805	1.16029	2.98648	1.5073	2.2896	1.69413	1.52706	1.38357	1.40609	5.21221	4.42503	2.96844	2.5924	1.14027	0.691116	0	0	4.54552	2.693	5.75581	4.72193
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047460 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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