TCONS_00047465 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047465
Unique NameTCONS_00047465
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length417

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047465 ID=TCONS_00047465|Name=TCONS_00047465|organism=Clytia hemisphaerica|type=transcript|length=417bp
AAATTattatgaaagccaaaacatTTCCCTACCTTTTGTACCAATAATTT
GTTTCTGTTTTGACTTCCCGCTCGCCAAAATTTGCTTCAAAGAAAATGCG
CTCTAGCGATACCATTTTGCTATTTTAGAAGGACGAAGTAACTTTTGAAC
TGAGGAGATCTGGGTACAAGATAGCGCGCAAATGGTTGTTGCTAAGAAGC
AGCCTATTCAAGTACGTTTTATCCCaccaaatgttttttcttgaatATTC
CGTGATAAATAACAAGAGCCGCGGATCAATTAGGTGCGTAAAATTTACCA
GGGTAGCCCAATCATTACGCACCTTTTCAAGTTACCATTCAAGCTTTAAA
GTCGCCAATACATTGTTTCaagtaatatcttttcaacacagTTTAATAGC
CAATTGGTTTTCTTAAC
Run BLAST on NCBI

transcript from alignment at scaffold_128:200690..201106

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047465 ID=TCONS_00047465|Name=TCONS_00047465|organism=Clytia hemisphaerica|type=transcript|length=417bp|location=Sequence derived from alignment at scaffold_128:200690..201106 (Clytia hemisphaerica)
GTTAAGAAAACCAATTGGCTATTAAActgtgttgaaaagatattacttGA
AACAATGTATTGGCGACTTTAAAGCTTGAATGGTAACTTGAAAAGGTGCG
TAATGATTGGGCTACCCTGGTAAATTTTACGCACCTAATTGATCCGCGGC
TCTTGTTATTTATCACGGAATattcaagaaaaaacatttggtGGGATAAA
ACGTACTTGAATAGGCTGCTTCTTAGCAACAACCATTTGCGCGCTATCTT
GTACCCAGATCTCCTCAGTTCAAAAGTTACTTCGTCCTTCTAAAATAGCA
AAATGGTATCGCTAGAGCGCATTTTCTTTGAAGCAAATTTTGGCGAGCGG
GAAGTCAAAACAGAAACAAATTATTGGTACAAAAGGTAGGGAAatgtttt
ggctttcataatAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030233XLOC_030233Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047465-exon-scaffold_128-1491911889:200690..201106TCONS_00047465-exon-scaffold_128-1491911889:200690..201106Clytia hemisphaericaexon
TCONS_00047465-exon-scaffold_128-1510915933:200690..201106TCONS_00047465-exon-scaffold_128-1510915933:200690..201106Clytia hemisphaericaexon
TCONS_00047465-exon-scaffold_128-1575043694:200690..201106TCONS_00047465-exon-scaffold_128-1575043694:200690..201106Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_128supercontigscaffold_128:200690..201106 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.12639	2.14765	3.83572	8.02039	3.05621	1.7634	0.922818	2.43098	0.735121	1.20759	0.345613	0.889463	2.60913	1.27413	0.89848	0.361841	0	1.51459	1.686	0.734434	0	0.787268	0.477146	0.355599	2.3816	2.7283	1.46644	0.732518	0.862023	1.29222
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047465 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top