TCONS_00047478 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047478
Unique NameTCONS_00047478
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length496

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047478 ID=TCONS_00047478|Name=TCONS_00047478|organism=Clytia hemisphaerica|type=transcript|length=496bp
CTTCCTCAAATCTTTATGCTAAACTCTTTTCCAAAGTCAATATATGCTAA
CTTGAAATCTCTTTAAGTACGAGACACAAGTCACAAACCAGATGAAGTTT
ACGGGCTAATAGAACGTCTTGCGCCTGGTCAAAGAAAGATAGAAATGTTT
GGCCGTATGCATAATGTTCAACCGAATTGGATAACACTAGGTAATCAGTT
AGCAGGTGTCAATTTGGTGGAGCCTGACGTCATCAAACGGTTCCAGGAAC
GGTATCCAAGTGGGTCGTGTCTGCCACAAGCCAAGAAACCTGATGCACCA
AAAACAGAATAAATTATTCGTAATGCTGTCATCGAAAAGCTTCAACATGA
TGATTCTCCATGAATTTATTCATGAAGCGTCAACACGTTGTGTTGTTATC
TGAAAGACGGCTTACGAAGAAAACGTTACATGCCCAAAAGTAACATTTCA
GAGTTTCTAAATCAATACCATTTTCAGCGAGAAGTGGAGCCATCTT
Run BLAST on NCBI

transcript from alignment at scaffold_13:60585..62458+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047478 ID=TCONS_00047478|Name=TCONS_00047478|organism=Clytia hemisphaerica|type=transcript|length=1874bp|location=Sequence derived from alignment at scaffold_13:60585..62458+ (Clytia hemisphaerica)
CTTCCTCAAATCTTTATGCTAAACTCTTTTCCAAAGTCAATATATGCTAA
CTTGAAATCTCTTTAAGTAGGTTCTTACGTGAAAGTTTCTATTTCAAGAT
TACAATTTTATAAAAGGCCAATTTATCTTCCTTCAGGTCTCTGGTTGTAC
TCTAAGGTACTTGATTAAGGAGTTCAGTAGTAGGATTTGTAAACCACCAA
TATTCACCCTCCTTTCTGTTAATAAGGCACCTTCTTTTACAAGCTtacac
catagtataagaaagccgcggctggaatgataacatctgattttatgttg
ttctatctctgtcgtatttgatgactatttgttgatcaagaaatcagtaa
tgtagcatcttcaATGGTAAATTTTtatggtttgtcgttaatacttactt
ctcagtgcgttttaggcATTAATGATATactcttgataatacacttgcat
tataaaatcattgtaaaggaaagatcaacaataagaaatctaaacaagca
caaaatggctgggctgaaagaactcaaaaattaataaagtgcctcaaatg
ccttcacaataatTCAGTGAAATTATTtcagaaatcaatgaaaatgtaca
tcaagataatactgtgaaagtttcaagccagcaccttcaaaatttatcat
tcaaactaccAGGagagttgtcatcttgaatatagttcttataatctcaa
ttttggtgaaaaactattgtttccacaaaatactcctaaaatatgtccaa
aattagttcaagtgttctattgggtacagattcaaagatatctagcaaaa
actttttgtgaaggaaaaaaCTATCTACCGATAACAAACTGatcatcttg
atgttcttataaagctcggagacagagatggaacagcaattaactgaaaa
gagaatgcggtacatattccagccgcggctttcttatactatgcttacAC
TTTATTCATTTGTTGTGTTCATCATTTTAGGTACGAGACACAAGTCACAA
ACCAGATGAAGTTTACGGGCTAATAGAACGTCTTGCGCCTGGTCAAAGAA
AGATAGGTAAGAAACCAGGCAATTCTTTTCCTCCGAATTAATCATAGACC
ATGTacaggaaatattttttctgaatttgagGCCCTTTTTTCAGTTTATA
TAGATTTAATTCACTACAAGCAAactaaaaattgctaaaaaaaaactaaa
aacataCTGCAATTCAGCAGAGTTGAAGGCTGACTCAATACTTTTATATT
TAAGCTcaataacaaaaaatattttttgctataCTATTTTGATATGCAGT
ACACGATGTTGATAGAAATCCACGCCTTTATTTTTCGCTTTAGAAATGTT
TGGCCGTATGCATAATGTTCAACCGAATTGGTAAGTGATCCAGTTGACTG
TATAAAACACTTTTGCCTGAGGTTTTCTTGTCTTTTAATGAATGGATGAA
TAAATGACATAATTAATTGGTATAATTATCAGGGGAACTGAGTTTGGATA
TGTCATGATTTGTATgaaaatcaattcaaattttcatcacATTCCTCTTT
TCCACAGGATAACACTAGGTAATCAGTTAGCAGGTGTCAATTTGGTGGAG
CCTGACGTCATCAAACGGTTCCAGGAACGGTATCCAAGTGGGTCGTGTCT
GCCACAAGCCAAGAAACCTGATGCACCAAAAACAGAATAAATTATTCGTA
ATGCTGTCATCGAAAAGCTTCAACATGATGATTCTCCATGAATTTATTCA
TGAAGCGTCAACACGTTGTGTTGTTATCTGAAAGACGGCTTACGAAGAAA
ACGTTACATGCCCAAAAGTAACATTTCAGAGTTTCTAAATCAATACCATT
TTCAGCGAGAAGTGGAGCCATCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030241XLOC_030241Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047478-exon-scaffold_13-1491911889:60585..60650TCONS_00047478-exon-scaffold_13-1491911889:60585..60650Clytia hemisphaericaexon
TCONS_00047478-exon-scaffold_13-1510915933:60585..60650TCONS_00047478-exon-scaffold_13-1510915933:60585..60650Clytia hemisphaericaexon
TCONS_00047478-exon-scaffold_13-1575043694:60585..60650TCONS_00047478-exon-scaffold_13-1575043694:60585..60650Clytia hemisphaericaexon
TCONS_00047478-exon-scaffold_13-1491911889:61565..61640TCONS_00047478-exon-scaffold_13-1491911889:61565..61640Clytia hemisphaericaexon
TCONS_00047478-exon-scaffold_13-1510915933:61565..61640TCONS_00047478-exon-scaffold_13-1510915933:61565..61640Clytia hemisphaericaexon
TCONS_00047478-exon-scaffold_13-1575043694:61565..61640TCONS_00047478-exon-scaffold_13-1575043694:61565..61640Clytia hemisphaericaexon
TCONS_00047478-exon-scaffold_13-1491911889:61928..61964TCONS_00047478-exon-scaffold_13-1491911889:61928..61964Clytia hemisphaericaexon
TCONS_00047478-exon-scaffold_13-1510915933:61928..61964TCONS_00047478-exon-scaffold_13-1510915933:61928..61964Clytia hemisphaericaexon
TCONS_00047478-exon-scaffold_13-1575043694:61928..61964TCONS_00047478-exon-scaffold_13-1575043694:61928..61964Clytia hemisphaericaexon
TCONS_00047478-exon-scaffold_13-1491911889:62142..62458TCONS_00047478-exon-scaffold_13-1491911889:62142..62458Clytia hemisphaericaexon
TCONS_00047478-exon-scaffold_13-1510915933:62142..62458TCONS_00047478-exon-scaffold_13-1510915933:62142..62458Clytia hemisphaericaexon
TCONS_00047478-exon-scaffold_13-1575043694:62142..62458TCONS_00047478-exon-scaffold_13-1575043694:62142..62458Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:60585..62458 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.73164	3.51581	0.793441	0	5.32481	0	0	0.000279927	0	0	1.67803	0	2.67336	4.23267	2.50214	11.3705	3.33395	7.60722	6.49787	5.73938	3.91666	11.1094	0	1.84943	0	3.43191	5.11323	0	15.7481	10.4047
Blast
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BLAST of TCONS_00047478 vs. Swiss-Prot (Human)
Match: MTA70 (N6-adenosine-methyltransferase 70 kDa subunit OS=Homo sapiens GN=METTL3 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.969e-31
Identity = 49/66 (74.24%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:   67 VRDTSHKPDEVYGLIERLAPGQRKIEMFGRMHNVQPNWITLGNQLAGVNLVEPDVIKRFQERYPSG 264
            VR TSHKPDE+YG+IERL+PG RKIE+FGR HNVQPNWITLGNQL G++L++PDV+ RF++RYP G
Sbjct:  507 VRSTSHKPDEIYGMIERLSPGTRKIELFGRPHNVQPNWITLGNQLDGIHLLDPDVVARFKQRYPDG 572
The following BLAST results are available for this feature:
BLAST of TCONS_00047478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MTA702.969e-3174.24N6-adenosine-methyltransferase 70 kDa subunit OS=H... [more]
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