TCONS_00047486 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047486
Unique NameTCONS_00047486
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length479

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047486 ID=TCONS_00047486|Name=TCONS_00047486|organism=Clytia hemisphaerica|type=transcript|length=479bp
AAGAAAGTCCGCTTTCCGTGAATACTACAGAGTTACAGGCTTAGACTTTG
GACGGCCATTTTTATATCATATTGTCGTTGGCAAGTTGGTTATTCCAACG
CTTATACAATCTCACACTTTTCCTTCTCAATTTGAATTCTTGGTCAATTT
ATCCATCTTAATCTACCTTAATCTTTCACACTATGTCTGCTTTAAGACTC
ATGATAGCTGAGGTGACGTCAGTTGCCAGAACTTCATTGGAGAAGGGCAA
ATCATGGGGACCAACAGCTGCAGCATGGGGAGGTAGTCTTGGATTGATCG
GACTCTTTTTAACGGATTGGAAAGTGATCACCGGAAATATCCCTTACATT
AAAGACAAATACAATCACGAAGTACCAAGgtAAAAAGCGTTGCCGAATCA
AGTATTCGAATGCACTGACAATGTAaagtttgtaatttttttttatttta
tgaaaaataataccaaaaataccaaaaca
Run BLAST on NCBI

transcript from alignment at scaffold_13:71458..82998-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047486 ID=TCONS_00047486|Name=TCONS_00047486|organism=Clytia hemisphaerica|type=transcript|length=11541bp|location=Sequence derived from alignment at scaffold_13:71458..82998- (Clytia hemisphaerica)
AAGAAAGTCCGCTTTCCGTGAATACTACAGAGTTACAGGCTTAGACTTTG
GACGGCCATTTTTATATCATATTGTCGTTGGCAAGTTGGTTATTCCAACG
CTTATACAATCTCACACTTTTCCTTCTCAATTTGAATTCTTGGTCAATTT
ATCCATCTTAATCTACCTTAATCTTTCACACTATGTCTGCTTTAAGACTC
ATGATAGCTGAGGTGACGTCAGTTGCCAGAACTTCATTGGAGAAGGGCAA
ATCATGGTAAGAGTTTTTGTTCTTTTTTTGTAATGAACTTTTTTACCTTC
AAACTCACAGCACAAGAGAGAATAATAGGAATAGCNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNCACACAACGTTGTTTTAACGTTCATCTAACGT
TATGCTGCGAAAGTTATTTTCCAAGATTTTTAAGACTATCATCTTTATCA
TAAGTTGCATCTGAGACAAAAAAAGCTATAACTTTTGATAGAATTCGAAT
TAGATAGCTAGTTTTGCGCTTGTTGAAAAGACAAAAAAGAGTGGAATATT
ATCATAAATAAAAAACTCAAAAAAGATTGGAAAAGGAAGAAAAAGAAAGT
CAACTTTTTCAATAATCGTGATATAATTATCGTTTTCACACGAGCGGATT
CTTTGATCTTAAAAGAACATCATTAATGTGAAAAAAAATTTTCAAAGAAG
TTTATTCCATCGAAAGATATACCCCAGAGTTTATCACTGATTTACGTATC
AAAAACCATAAAAAAAACAACAAAAAATAGCCCGTTTCTAAGTCAACCAA
GGCAAAGTATTTGGCTGTATTTTGACTGAATGAATATTTTTTGAATCTTT
TTCCGCATTTATCTTATGACGTTCTAAGAAGATTGAAGAATTGCTGATAT
AAAAATGAAGATCATAGCATTATTCTACAAGAAGTTGATTTTCTTCTATC
TACTTCATTTTTCATTTCGTTTTTCCATTTTTTAATTTTTTTCTCTTTTG
ATAATATTCCACTCCGAATTGTCTTAAAGAGCACAAAATCGCTATTTAAT
TCGAATTCTATAATTTATAAAAAGTTATAGCCTTTTTTGTCTCCGCTGCA
AATTATATTGAGACAGACTTTGATATTCATATGTAGATATACTCCTTTTC
CCTTGTCTCTCTTCCTAGAGAAGTTTAAATGATGAAAACATGATTCCTTG
ATTTCATATAATCTTTTGATACGATAGTTTCCCGGAAATACCGAAATACC
GACATAAAAAATGGTATTTCACCACCGATACCGAGATGCTCTTGAAATAC
TTCGGCGGGTTGAAAATCTAGGTTAACATTTGACAGCAAATAATTTCGTC
AGAACAAAAATCATTTTCCGTAAAAGTTACCTTTTCTCTAGACTATAATT
GATGCGCTCTAAAGGGAATGGTTCCGCATCATATGCCTTCTTATCTTATC
AAATGGTCATCGCGGTTATGAGGTTAGGTACAGTAGGTTATCCCGGGGAA
ATATCAGCCCGGAAATATAGCGGAAATGCAATACCTAAAATAGAAACTGT
TTTTATATTCACGGCGCGCGAACAGAATTTAGAAAAGGTTTTCAAACAAG
AAAGTCCGCTTTCCGTGAATACTACAGAGTTACAGGCTTAGACTTTGGAC
GGCCATTTTTATATCATATTGTCGTTGGCAAGTTGGTTATTCCAACGCTT
ATACAATCTCACACTTTTCCTTCTCAATTTGAATTCTTGGTCAATTTATC
CATCTTAATCTACCTTAATCTTTCACACTATGTCTGCTTTAAGACTCATG
ATAGCTGAGGTGACGTCAGTTGCCAGAACTTCATTGGAGAAGGGCAAATC
ATGGTAAGAGTTTTTGTTCTTTTTTTGTAATGAACTTTTTTACCTTCAAA
CTCACAGCACAAGAGAGAATAATAGGAATAGCAGAGTGTCAGACGTGATG
TATAACCTTCGTTCAACAAATTTTTACTTCACTTATTCAAACGTCTGATT
GCAAACAAATCTACTTGGTGGCTTGCATTGCCAATTAATTAGTAAGTAAG
TAAGTTTGCGACCGCAGTCGAGGGCGACCCGAAGGCTCCCTTTTCGTATA
GCTGTCTACCTCCACCCGAAGGTAGGGGAGGGCGCCACTCCTTTCCCTGG
ATTTCTCCACTTACCCTTGATCCGTCTCTTTAGTTGCTGAGCATCAAGCA
GAGAGGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNGAACCCACGAGGGCACGGGACCCAT
GGGACCCACGAGGGCACGGGACCCACGGGACCCACGAGGGCACGGGACCC
ACGTAAATAATCACACTCTAAAAAAACACTATTCTTTCTCTCCGGAAAGT
TCCGGAGCTTCCAGAGCAAGTGATTTTTATCACGTTCTAAAAAACCGTTT
AAACATGCCAGAACATGGTTACAAAAAAATATTTGAATCTTGTCCTGCAC
CAGGTGATAGACACTTTAGTCAAATAGAATACTTACAGTCTTTGAGGATG
ATGGTTCAGCCATTAATGAAATTGAATTTGTCACATAAGCTAGGTATATT
CGAAAGCAATATTGGTCAAAATATTGAAACTAATCATAAGTCGGCTGACC
TTTTAAAAATACATGCATGCGCAGTTATAGTGGAGGTGTACCGGAACCTT
CCGAAGTTCCCAGTTTGCAGAGTATGGCAGAAATCATTGAGATCTCGGGG
GCAGAGATTTCTTACTTTTCAAGAGCAGGAGCAAAATTTTGATAATATCT
ACATTTCAGGGGCAAAATTATTGAAAACTACCATGAGATTGGGTAACTTG
CATCAGTGGAGGAGGCTAACATGCATAGCCCTCAAATGAATGACCTGGCT
GGTCATTAAAATACAAAGTTAAATCAAAACAAAAATGGTAGAGTAGAGCT
GCGAGCAGAGCGGTGAAAGCTTCTTCATAAAAGCGAAAGACATGTATATT
TTTCGGATCCGGCATGCGGGAATAGTGCCAGGACCTGCAGACGACCTGGT
AGGGTTGGGTATGGGTGTGGTTACGGTGTGGTTACGGTGTGGTTACGTAT
CAGATTGGCTAGGAATTGGGTTATTATCAGTTAGGGTTAGGGTTAGGGTT
AGAGCTCGAAACAAGCACTCTTTTGTGACTTTCTCCTAATGAAGTTTGGT
CCGTAGTTTGTACAATATAAATAGCCGTCAGAAACACTTTACTGGCATAA
ATTCGTGGCGCAGTGGATAAGGCATTGGGTTTCTAAACATCAGAACTTTG
CATTTAGTGGGTTCGAATCCCACCGGTGACGATCTGTCGGTAAGTCATTC
AGTAAGTTAGAAAACATAGAAAATAACTCAAAAAGAACCAGAAAGTCAGA
AAAACTACTTTAAACAAGAGACTGGAAAGTATGAAATAAATCCAGATCTG
TCTTTCGTCTTTATGAAGAAGCCACGACCGAGCGGAGCTGCGTAGTTGTA
TTTTAATGACCAGACAGGTCATTCATTTGAGGGCTATGCATGTTTGCCTC
CACTGATGCAAGATACCCGATCTCACTGTAGCTAATTTCACCAGTTTTTC
TGGCTTTTTTGTGGTGGAAAACAGATCTCAGGGGCAGAGTTTTGATGTTG
GAAATTTTCCTTTGGGCAACCATGACATGCTCTGAAAACCTGTGGAGTTC
TGATGCAGACCAATCGCCAAAAATTGTGAATCTTCCGCTGTTCCAGAGCA
CAAAAAAACGCCACTTTTCGCCCCGGACATTTCTGGAGCACCGGGAGGGT
CCTTGCCAATTGCATCCAATCAGATTTTTTTTAGTCTTTTCTCTCAAAAA
AGCTTAATTTTTAATTGCTCCTTGGGATTTGTAGATGTTATTTTTATTTT
TGCCTTTAATAGTAAAGTATTGGGCGGTTCCAGTTATATATAGTCTGTTT
TATACCCTCTGTGCACGACATGGACTTTCCTTAAAACAATTTACTTTTGA
AAAAATTCAGGATTTCCGTAACATTAAAGAATTTTTAAGGAAAAATCTTG
AATTTTCCGATACTTAACCAGAAAATAGAGCAAATTTTATGGATTTTCTA
AGACGGATGACCAACAGTTAGTCACACTACAGTAGCGTCCTGCCAAAATG
CGTATCAAAGATTAATGCTGCGAAAACGCTATACATTGATTTATTTACTT
TACTTGTTTACTTGACTTGCAGGCAAAAAAATGTGCCGCAAAACTTCTAA
AGAGATTCATGAAAAAATTTGAGCCAAGCCAACCTTGAAAACTANTGTAT
CAAAAATTAATGCTGCGAAAACGCTATACATTGATTTATTTACTTTACTT
GTTTACTTGACTTGCAGGCAAAAAAATGTGCCGCAAAACTTCTAAAGAGA
TTCATGAAAAAATTTGAGCCAAGCCAACCTTGAAAACTAATTTGAAGATC
AACTTCCCAAGAAAAAGATCTACGGCTGGGAGACGGAACCCACCTAGATC
TGCGCACTGCCAGACTTCAAACACTGACCCATTTACATGTGTGGAATTGT
CTTTACTTTAGCTTATAAACAAGGCTTTAAAAATCGAAGCCCCTGTGTTG
GGAATTGAATAACAAATTTTGGTTCGTTTGTAAGCTGGATGCGGGAGTTA
GTACGTAATTGGTCATTATGTTTTGTTTCAAGCTTTCAATTTTTACTTAA
TTGTCTTGGGATCTTCAACTTGATTCAGGTAACTCTCACCCTTGTTGTTT
CAAATACATCCTATAAATGACTGATGTTGTTTTTTCTGAAACCTTGATTT
TCCGTAAGTTGGTCTAATATCAACATCCCTCTTCTAATTTTGACATCCTT
CTTTAGAGATAAGAATTATAAGAAGATCCAAATCACTGATGGTCTTCTAA
CTGATTACTAACCAAGAAAATTAGTTTCAATCAGTGATTCTGACCTTCCT
ATTATTCTATCTCTAAAGCAGGGTGTCAAAATTAGAAGAAGGATGTCAGC
TTTAGACCAAATTACAGTAGACTTTTGCCGATATAAACTTTTTGCCACCA
GATAGGGTATTTTTTGAGCACTTAAAAACCTCGTAAATTCGTTATAAGTT
GACCAAATTTGACGTTTTATGACGTATGAATTCATATTCATATTCAATGC
TTTTTCTTTATTATTATTATTATTACCTAGTATTTGGTACAAAATGTAGT
TAAAAATTTACTGATGTGGACCTACTATAAATAAAAATATAAAAAATATT
TAGAAACAAGTGTATAAGTGAATGATTAATAAATAGTGTGTAAATATAAA
ATATCTAGTTTTTAAATATATAAATTAAAGTTAAAAATTAAAGTATTTAT
TAGTTAAACTTCCAGTGATGTTATAATTTTTCTAGAGCTAGAATTTGTTA
GTGTTTTAGAACTTGGATTTTGGGAGTTGAAATAGATTGTGATAGGCGAA
AGAGCAAAGGGTTTGAGCAAAGGTTTAGGCAACAAAAGCATAAATAAAAT
TTGAAAATAGTTGATCACAGATCCTCCTTAAAAAATATATATAAAAGTGT
AAAAATTGTAATATATCATACGTAGTGTTAAAAGAGTTTGTAAAAATTTA
GCATTGGGAGTTTTGAGTAAGGCAAAAGTGTTGTTGTGGTTGCAAAGTGT
CCCAAAAGTTGCAAGGTACTTGTAGAATAAGAGAGAATTTATTAGGTATA
GATAAACAAGAAGCTGGTGCAAAATCAAGGCTTATAGTCTGATTTTGATG
ATCAAATTAAATTAAAGACTTTAAATCTTACAGAATACTAAAACTTAGAT
TTTGGGGCAATTCAACGCAACAACAGGAAGTAGTATATACAGCCAATTAA
TTTTTTTGAACGTTTTTAAGCTAGTTTCTAATCGTTTATTATTATTAGAG
CAAACCATCAGAAGGACTGGTGAATAGTCGTTTGGGAGAGTGCGATGGTC
TATCTGAAAAGCAAATTACTCCAGTATTATAAACAAGATAAATTATCTTG
TCTCAAGGTAACAGCTGTGTTATGATTAATAAGACAAATCAATTATATGA
CCTCATCATTAAAAAAATTCTGCTGGAGTAATTAGTTATTCAAAAGGCCG
TCGTGTTCTCCCAAACAACTTTTCTGACTGGGATTCATGTATTAAACATC
AAATTGTAAAGCTATAATTGCTTTGCGTACTTTTCGCTTGAGAAAATGAT
CGACAGATTAAAAAACTGTCCGTGAGGGAGTTGGTGGGTATTCTGTGGGG
ATTAGTTAGTTTTTTTTTAACTTGGGCCCAATCTGACGCTGCTCTTATAA
TTTCGTTGCATCTGACAAATTGATGTTTGTGATAGCCTGGGACTTTAAGC
GTTAAACTTTATTCACAGTCTAGTTTTTTGGTATTTTTCTTTTTGTTCTT
TTTTAGAGATAGGAATAGTAGGAAGGTTTGAATCACCTGTCAGCAAAGAA
ATTTAGTTTCTACCAGCGATTTTGATCTTCCTATTTTCCAATCTCTAAAA
AGGGTATCAGAAGAAGACGAGGGATGTTGACATTAGATCAACTTACAATA
TCAAATAGACTATTTGCTAAGCGCGATGCCATTTTAACTCAATGAAAAAT
TATCGGCGCAAACATTACAAAATGACACTAAAAATATTACATGATCTTTA
GCGACGGAATGACCTGATAGAAGATCCGTTTCTTTTTTCCAGCGCTTAAT
TTTTATCTTTAATCTTTCTATACTTTAAGTGTCCTTGACTGCAAAGTAAA
AATACAGTCATTATGCTTCTTGACATTTGGGGATTTTGCAACCTAATGAT
CGCATTTGTACTTTTAGGCACAATGTGCAGGCACTTTTTTTAAGAAATCA
GATAAAAGTTAAATTGATGGAAATTGACCTGCTATTCGGTTATCATTGGG
GTCATTACGTTATTTTTTCACCGCTAGTCAAAATGACTAGCAAAAGAGCT
ATTCGGAGGGCGCGACGTCATGTCGCATAGCTAAAGACTTCAGGATCACA
ACAATAGACATTTTACTAATCACGATACCATTTTGAGTCCGATAACTTAC
TAGCGAAGTAAACATAACGTAGACTCCAAAAATTAACATAACCTTAGCGA
CCGCCTAACCTTTTTAACAACCAGAAATACAGTTTTCCAATTTTTGCCAA
TGATACAGAAATGAAAGATATGGCAAATTGACAAAAAGGGATGATGACGG
ACGCGTTGGGGACGATGCAGAGTTAAAAAAAAGTGTTATTTGTTATTATG
AATATTTTGGATGATATCTTATCAAATTAGCGTGACACATAAATTCTAAA
ACTGACTACAATCAGTCACAAAATACTTGGCACAAAAGGGAAATTCACCG
GGGTGTTTTGAAACCACAATCGATTTGTAAGTGCTCTAAAGTAGGTTGAG
GACCTTAGGATCTGAGGATCTAAAAGTTCAAAAATGGTCCACTAGGGCTT
GAAATATAGCCTAGAAACCAATAAATTCCTCCCAGATCGAAATAATCGAT
GAAATCAAGTTGAAGGCCTGACATTGACATTCTCGCTCGAACTTCAACTT
TCGAAAAATGGTAAATTAGCCAAAAGTGCCAATATATTATGGTACTGATT
TTAGATTGGGTTTAATTTAGCCGCTTTTTGAGTTCAGCGTTTATTTACTT
CCACAGTTTCCAGACTAAAACATTATACATTTTCACACTTTAATGAAATC
TTTAGAATAACTTTCCTAAAGGGACATTTAATGGGTCTTGAAATTGTATC
CTTGCTGTTTTTTTCTCATAGGGGACCAACAGCTGCAGCATGGGGAGGTA
GTCTTGGATTGATCGGACTCTTTTTAACGGATTGGAAAGTGATCACCGGA
AATATCCCTTACATTAAAGACAAATACAATCACGAAGTACCAAGGTATCT
AACATACTTTTATTCTTTCGCTAATTTTGATAATTTTCGTAAAAATGCGT
AAGATTCCTGGTCACAAAATTTGTTTCAAGTGTCTTATCTTATGATGGTG
AGCTCAATTTTCGACTTCTTTGAAAAGTATACTTTGAGAGGTTTCCGAAA
TTTTAAAAATTTAACATTTAGGCAGCGTTCTCTGATCTGATTTGGTTTGC
CGATCTAGCTTTGATGGGAATGAAAATACAAAGAGTTTTTTAGACTAGAG
GACTCAAATTTCAGAGTACCTTATCGGCACCGGCCCCTATTACGCCACAG
CCTGATTTTGGGCTTACGTCAATTAGGGCCGTAAATAACGCCAAAATTTG
TTAGAATGGCTATTTATGCTTCAATTTACATTAAAATATTTTTCAGTAGT
AAACTGTTGAAAATTCCATTGAAAATCACTGATTTTTGCAAAGTTTTAAA
TATGGAGTAAAACAATGGATTATTTTTTGTCTTCTTATCATATTACCAAA
ATCCTTTGAATAGAGAAAAATGGTCAAAAATTAACGCCACTTTTAAGTAA
AATTTGCAAAATTTGGCCTTTTTTACACCGGTCCTTTTAAAGCCGGCCTT
TATTACGCCAAGAGCATAAAAATAACGTAAATAAGGGCCGGTGTAAAAAG
GGCCGATAAGGTAATCAAATTTCGTTTTATTTTTCTTTCAGGTAAAAAGC
GTTGCCGAATCAAGTATTCGAATGCACTGACAATGTAAAGTTTGTAATTT
TTTTTTATTTTATGAAAAATAATACCAAAAATACCAAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030246XLOC_030246Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047486-exon-scaffold_13-1575043694:82787..82998TCONS_00047486-exon-scaffold_13-1575043694:82787..82998Clytia hemisphaericaexon
TCONS_00047486-exon-scaffold_13-1575043694:80246..80289TCONS_00047486-exon-scaffold_13-1575043694:80246..80289Clytia hemisphaericaexon
TCONS_00047486-exon-scaffold_13-1575043694:72255..72377TCONS_00047486-exon-scaffold_13-1575043694:72255..72377Clytia hemisphaericaexon
TCONS_00047486-exon-scaffold_13-1575043694:71458..71557TCONS_00047486-exon-scaffold_13-1575043694:71458..71557Clytia hemisphaericaexon
TCONS_00047486-exon-scaffold_13-1510915933:82787..82998TCONS_00047486-exon-scaffold_13-1510915933:82787..82998Clytia hemisphaericaexon
TCONS_00047486-exon-scaffold_13-1510915933:80246..80289TCONS_00047486-exon-scaffold_13-1510915933:80246..80289Clytia hemisphaericaexon
TCONS_00047486-exon-scaffold_13-1510915933:72255..72377TCONS_00047486-exon-scaffold_13-1510915933:72255..72377Clytia hemisphaericaexon
TCONS_00047486-exon-scaffold_13-1510915933:71458..71557TCONS_00047486-exon-scaffold_13-1510915933:71458..71557Clytia hemisphaericaexon
TCONS_00047486-exon-scaffold_13-1491911889:82787..82998TCONS_00047486-exon-scaffold_13-1491911889:82787..82998Clytia hemisphaericaexon
TCONS_00047486-exon-scaffold_13-1491911889:80246..80289TCONS_00047486-exon-scaffold_13-1491911889:80246..80289Clytia hemisphaericaexon
TCONS_00047486-exon-scaffold_13-1491911889:72255..72377TCONS_00047486-exon-scaffold_13-1491911889:72255..72377Clytia hemisphaericaexon
TCONS_00047486-exon-scaffold_13-1491911889:71458..71557TCONS_00047486-exon-scaffold_13-1491911889:71458..71557Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:71458..82998 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
157.482	153.057	212.156	241.112	148.493	121.262	165.387	181.877	201.635	176.106	222.252	223.328	141.221	168.532	144.749	135.32	282.261	267.52	94.8428	88.7223	242.908	222.526	120.98	113.755	142.276	135.603	149.905	122.006	91.0058	76.0041
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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