TCONS_00047498 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047498
Unique NameTCONS_00047498
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length703

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047498 ID=TCONS_00047498|Name=TCONS_00047498|organism=Clytia hemisphaerica|type=transcript|length=703bp
AGGTATCAGACATATTGAAGAAGAATTTCTACGTAGACGATATGCTCAAA
GCAACAAGAACAGCCAATCGTGCGGTGAAGTTGATCAAAGATGCTCAAAG
TTTGTGCATTGAAGGAGGCTTCAACCTGACTCAACTTGGATCCAACTCTC
GTGATGTGATAGATTCCCTCCCTGAAGGAAAGAGGATGAAGGGAATAAAA
GACTTCGATTCATCAACTGCTTCATTACCTGTCGAACGCGTACTTGGCGT
CTCTTGGTGTATCGAAAATGATGTCTTCAATTTTAGAATAGTGTTGAAAG
ATAAACCATTGACGAGACGTGGAATACTCTCCACTATTTCATCCATTTAC
GACCCACTCGGTTTTGCAGCTCCAGTGATGCTACCAATGAAGAAGCTTCT
GCAAATGTTGACCAAGGAGAAGCTTGGGTGGGATGATCAAGTGCCTCCAG
AAGTACGGACACCTTGGGAAAAGTGGAGACATCAATTACCTTCACTGCAA
TCGGTAGAGATCAATCGTTGCTTCAAGCCAATCTCGTTTGGAGAAGTCAC
TGATGTCACAATTCATCACTTCTCTGATGCTTCGACACTGGGATATGGTC
AGTGCAGCTATCTTCGTCTTGAGAATGAAAGAGGAGAAGTCAATGTCAGT
TTTCTCATGGGCAAGTCACGAGTCAGTCCATTGAAACAAGTTTCAGTACC
ACG
Run BLAST on NCBI

protein sequence of TCONS_00047498-protein

>TCONS_00047498-protein ID=TCONS_00047498-protein|Name=TCONS_00047498-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
VSDILKKNFYVDDMLKATRTANRAVKLIKDAQSLCIEGGFNLTQLGSNSR
DVIDSLPEGKRMKGIKDFDSSTASLPVERVLGVSWCIENDVFNFRIVLKD
KPLTRRGILSTISSIYDPLGFAAPVMLPMKKLLQMLTKEKLGWDDQVPPE
VRTPWEKWRHQLPSLQSVEINRCFKPISFGEVTDVTIHHFSDASTLGYGQ
CSYLRLENERGEVNVSFLMGKSRVSPLKQVSVP
Run BLAST on NCBI

transcript from alignment at scaffold_13:29691..30393

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047498 ID=TCONS_00047498|Name=TCONS_00047498|organism=Clytia hemisphaerica|type=transcript|length=703bp|location=Sequence derived from alignment at scaffold_13:29691..30393 (Clytia hemisphaerica)
CGTGGTACTGAAACTTGTTTCAATGGACTGACTCGTGACTTGCCCATGAG
AAAACTGACATTGACTTCTCCTCTTTCATTCTCAAGACGAAGATAGCTGC
ACTGACCATATCCCAGTGTCGAAGCATCAGAGAAGTGATGAATTGTGACA
TCAGTGACTTCTCCAAACGAGATTGGCTTGAAGCAACGATTGATCTCTAC
CGATTGCAGTGAAGGTAATTGATGTCTCCACTTTTCCCAAGGTGTCCGTA
CTTCTGGAGGCACTTGATCATCCCACCCAAGCTTCTCCTTGGTCAACATT
TGCAGAAGCTTCTTCATTGGTAGCATCACTGGAGCTGCAAAACCGAGTGG
GTCGTAAATGGATGAAATAGTGGAGAGTATTCCACGTCTCGTCAATGGTT
TATCTTTCAACACTATTCTAAAATTGAAGACATCATTTTCGATACACCAA
GAGACGCCAAGTACGCGTTCGACAGGTAATGAAGCAGTTGATGAATCGAA
GTCTTTTATTCCCTTCATCCTCTTTCCTTCAGGGAGGGAATCTATCACAT
CACGAGAGTTGGATCCAAGTTGAGTCAGGTTGAAGCCTCCTTCAATGCAC
AAACTTTGAGCATCTTTGATCAACTTCACCGCACGATTGGCTGTTCTTGT
TGCTTTGAGCATATCGTCTACGTAGAAATTCTTCTTCAATATGTCTGATA
CCT

Coding sequence (CDS) from alignment at scaffold_13:29691..30393

>TCONS_00047498 ID=TCONS_00047498|Name=TCONS_00047498|organism=Clytia hemisphaerica|type=CDS|length=699bp|location=Sequence derived from alignment at scaffold_13:29691..30393 (Clytia hemisphaerica)
TGGTACTGAAACTTGTTTCAATGGACTGACTCGTGACTTGCCCATGAGAA
AACTGACATTGACTTCTCCTCTTTCATTCTCAAGACGAAGATAGCTGCAC
TGACCATATCCCAGTGTCGAAGCATCAGAGAAGTGATGAATTGTGACATC
AGTGACTTCTCCAAACGAGATTGGCTTGAAGCAACGATTGATCTCTACCG
ATTGCAGTGAAGGTAATTGATGTCTCCACTTTTCCCAAGGTGTCCGTACT
TCTGGAGGCACTTGATCATCCCACCCAAGCTTCTCCTTGGTCAACATTTG
CAGAAGCTTCTTCATTGGTAGCATCACTGGAGCTGCAAAACCGAGTGGGT
CGTAAATGGATGAAATAGTGGAGAGTATTCCACGTCTCGTCAATGGTTTA
TCTTTCAACACTATTCTAAAATTGAAGACATCATTTTCGATACACCAAGA
GACGCCAAGTACGCGTTCGACAGGTAATGAAGCAGTTGATGAATCGAAGT
CTTTTATTCCCTTCATCCTCTTTCCTTCAGGGAGGGAATCTATCACATCA
CGAGAGTTGGATCCAAGTTGAGTCAGGTTGAAGCCTCCTTCAATGCACAA
ACTTTGAGCATCTTTGATCAACTTCACCGCACGATTGGCTGTTCTTGTTG
CTTTGAGCATATCGTCTACGTAGAAATTCTTCTTCAATATGTCTGATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030253XLOC_030253Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047498-proteinTCONS_00047498-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047498-exon-scaffold_13-1491911889:29691..30393TCONS_00047498-exon-scaffold_13-1491911889:29691..30393Clytia hemisphaericaexon
TCONS_00047498-exon-scaffold_13-1510915933:29691..30393TCONS_00047498-exon-scaffold_13-1510915933:29691..30393Clytia hemisphaericaexon
TCONS_00047498-exon-scaffold_13-1575043694:29691..30393TCONS_00047498-exon-scaffold_13-1575043694:29691..30393Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:29691..30393 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22089	1.54073	0.487891	0.0795542	3.19604	1.83677	7.3866	10.8915	5.02308	5.0225	2.54662	5.06997	0.191054	0.198411	0.244681	0.0875269	0.323478	0.221036	0	0	0.69437	1.11768	0.494066	1.34753	0.462642	0.344081	0	0	0.717404	0.649708
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008042Retrotrans_Pao
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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