TCONS_00047499 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047499
Unique NameTCONS_00047499
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047499 ID=TCONS_00047499|Name=TCONS_00047499|organism=Clytia hemisphaerica|type=transcript|length=507bp
AAGGAAGCTCATGAAGGAGGAAAGGATGAGGAATGACTACTTGATTTCGA
TGTCCAAGTTGTTCGAGCATGGACATGCAGTGTACATCGACTCCTCTGAA
GACAAGCCCGACGATAGCGACGTATGGTACATACCACATCATGGCGTTTA
CCATCCGCGTAAACCTGACAAGCTTAGAGTCGTCTTTGATTGCAGTTCAA
GATACAGGGGTGTCTCTTTAAATGACACTTTATTACAAGGACCGGACTTG
ACAAACCAACTCGTTGGCGTCCTTACACGTTTCAGACAAGACGATATCGT
GATAGTGGGCGATATCGAGAAGATGTTTTACCAGGTCAACGTCGAAGAAA
AGCATCAAAACTTCTTGAGGTTTCTGTGGTGGCCAGATGGTGACTTTACT
AAAGAGCTTGTCGAATGCAGAATGACAGTTCATCTATTCGGAGCAACATC
TTCTCCAAGCGTTGCAAATTTTGCTCTACGCAAAACAGCTGACGATTATG
GTACCAA
Run BLAST on NCBI

protein sequence of TCONS_00047499-protein

>TCONS_00047499-protein ID=TCONS_00047499-protein|Name=TCONS_00047499-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
RKLMKEERMRNDYLISMSKLFEHGHAVYIDSSEDKPDDSDVWYIPHHGVY
HPRKPDKLRVVFDCSSRYRGVSLNDTLLQGPDLTNQLVGVLTRFRQDDIV
IVGDIEKMFYQVNVEEKHQNFLRFLWWPDGDFTKELVECRMTVHLFGATS
SPSVANFALRKTADDYGT
Run BLAST on NCBI

transcript from alignment at scaffold_13:30513..31019

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047499 ID=TCONS_00047499|Name=TCONS_00047499|organism=Clytia hemisphaerica|type=transcript|length=507bp|location=Sequence derived from alignment at scaffold_13:30513..31019 (Clytia hemisphaerica)
TTGGTACCATAATCGTCAGCTGTTTTGCGTAGAGCAAAATTTGCAACGCT
TGGAGAAGATGTTGCTCCGAATAGATGAACTGTCATTCTGCATTCGACAA
GCTCTTTAGTAAAGTCACCATCTGGCCACCACAGAAACCTCAAGAAGTTT
TGATGCTTTTCTTCGACGTTGACCTGGTAAAACATCTTCTCGATATCGCC
CACTATCACGATATCGTCTTGTCTGAAACGTGTAAGGACGCCAACGAGTT
GGTTTGTCAAGTCCGGTCCTTGTAATAAAGTGTCATTTAAAGAGACACCC
CTGTATCTTGAACTGCAATCAAAGACGACTCTAAGCTTGTCAGGTTTACG
CGGATGGTAAACGCCATGATGTGGTATGTACCATACGTCGCTATCGTCGG
GCTTGTCTTCAGAGGAGTCGATGTACACTGCATGTCCATGCTCGAACAAC
TTGGACATCGAAATCAAGTAGTCATTCCTCATCCTTTCCTCCTTCATGAG
CTTCCTT

Coding sequence (CDS) from alignment at scaffold_13:30513..31019

>TCONS_00047499 ID=TCONS_00047499|Name=TCONS_00047499|organism=Clytia hemisphaerica|type=CDS|length=504bp|location=Sequence derived from alignment at scaffold_13:30513..31019 (Clytia hemisphaerica)
GGTACCATAATCGTCAGCTGTTTTGCGTAGAGCAAAATTTGCAACGCTTG
GAGAAGATGTTGCTCCGAATAGATGAACTGTCATTCTGCATTCGACAAGC
TCTTTAGTAAAGTCACCATCTGGCCACCACAGAAACCTCAAGAAGTTTTG
ATGCTTTTCTTCGACGTTGACCTGGTAAAACATCTTCTCGATATCGCCCA
CTATCACGATATCGTCTTGTCTGAAACGTGTAAGGACGCCAACGAGTTGG
TTTGTCAAGTCCGGTCCTTGTAATAAAGTGTCATTTAAAGAGACACCCCT
GTATCTTGAACTGCAATCAAAGACGACTCTAAGCTTGTCAGGTTTACGCG
GATGGTAAACGCCATGATGTGGTATGTACCATACGTCGCTATCGTCGGGC
TTGTCTTCAGAGGAGTCGATGTACACTGCATGTCCATGCTCGAACAACTT
GGACATCGAAATCAAGTAGTCATTCCTCATCCTTTCCTCCTTCATGAGCT
TCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030254XLOC_030254Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047499-proteinTCONS_00047499-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047499-exon-scaffold_13-1491911889:30513..31019TCONS_00047499-exon-scaffold_13-1491911889:30513..31019Clytia hemisphaericaexon
TCONS_00047499-exon-scaffold_13-1510915933:30513..31019TCONS_00047499-exon-scaffold_13-1510915933:30513..31019Clytia hemisphaericaexon
TCONS_00047499-exon-scaffold_13-1575043694:30513..31019TCONS_00047499-exon-scaffold_13-1575043694:30513..31019Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:30513..31019 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.805066	1.2242	0.269595	0	0.9269	0.82894	4.65598	4.75247	2.07921	1.34585	0.973997	2.31006	0.0791783	0	0	0	0	0.0916039	0	0	0.315391	0.435088	0	0.74461	0.511287	0.138687	0	0	0.166185	0.134629
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047499 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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