TCONS_00047501 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047501
Unique NameTCONS_00047501
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length718

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047501 ID=TCONS_00047501|Name=TCONS_00047501|organism=Clytia hemisphaerica|type=transcript|length=718bp
AGAAAAGTATTACTGAATCTTTGAGCTTGCTTGGCTATCAATTTAAACAT
TGGTGATCAATCTTAAGatcaaattgaaaaatgaaaggcTTTTGTTACAA
CCCTTTCTTCAGATTTCAAACGAGAAATCATAAAATTTGCCTCCTTCTCA
CCGGCAGAAATACAGCTCACACAAAAAGAATCAGCCGTGTGAACCAATTG
AAAGTCAATCATAGCTTTtctaccatctttgtttttacTGAGCGTTACCA
ATAGCAACCCACACAGCCTCGGTTCCAAGTGATCAGGTACAAGTCTTGAA
GAAGTGAAATAATCGTTAATAAAGGAATCTAATTTCAGTATATTCCCAGG
ATCACGGTACAAGAAATCACACGCGTTCTGAGCAAGGTGTGTCCGTATTA
TCGCCTCTCCCGTACCAGAACAACATGCGGAAATCGTTGTGTTTTCATCA
TATGTAAAGGACCAACATCCGGCTCCGAAGCTCGTGCACGGCCCCAAACG
ACCAGGTTGCTTCATTGCAAGTCCACCGCTTGAGATTGCAGAAGCGACAT
TGAAATCATGGTCGACACAAATGACTCCGATAGTGTCACTGATTAAGTCT
TCAGTGTCCGAAAAATAGACATCAATGTCCGAAAAATGCGCAGAGCTTAT
TGGTGGTTTAAGCTCTGTTTGTAAGGTGGAGTTTCGACTTTGGTCATTCA
CAAACAATCCAGAGTGCT
Run BLAST on NCBI

protein sequence of TCONS_00047501-protein

>TCONS_00047501-protein ID=TCONS_00047501-protein|Name=TCONS_00047501-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
HSGLFVNDQSRNSTLQTELKPPISSAHFSDIDVYFSDTEDLISDTIGVIC
VDHDFNVASAISSGGLAMKQPGRLGPCTSFGAGCWSFTYDENTTISACCS
GTGEAIIRTHLAQNACDFLYRDPGNILKLDSFINDYFTSSRLVPDHLEPR
LCGLLLVTLSKNKDGRKAMIDFQLVHTADSFCVSCISAGEKEANFMISRL
KSEERVVTKAFHFSI
Run BLAST on NCBI

transcript from alignment at scaffold_13:44653..45370

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047501 ID=TCONS_00047501|Name=TCONS_00047501|organism=Clytia hemisphaerica|type=transcript|length=718bp|location=Sequence derived from alignment at scaffold_13:44653..45370 (Clytia hemisphaerica)
AGCACTCTGGATTGTTTGTGAATGACCAAAGTCGAAACTCCACCTTACAA
ACAGAGCTTAAACCACCAATAAGCTCTGCGCATTTTTCGGACATTGATGT
CTATTTTTCGGACACTGAAGACTTAATCAGTGACACTATCGGAGTCATTT
GTGTCGACCATGATTTCAATGTCGCTTCTGCAATCTCAAGCGGTGGACTT
GCAATGAAGCAACCTGGTCGTTTGGGGCCGTGCACGAGCTTCGGAGCCGG
ATGTTGGTCCTTTACATATGATGAAAACACAACGATTTCCGCATGTTGTT
CTGGTACGGGAGAGGCGATAATACGGACACACCTTGCTCAGAACGCGTGT
GATTTCTTGTACCGTGATCCTGGGAATATACTGAAATTAGATTCCTTTAT
TAACGATTATTTCACTTCTTCAAGACTTGTACCTGATCACTTGGAACCGA
GGCTGTGTGGGTTGCTATTGGTAACGCTCAgtaaaaacaaagatggtaga
AAAGCTATGATTGACTTTCAATTGGTTCACACGGCTGATTCTTTTTGTGT
GAGCTGTATTTCTGCCGGTGAGAAGGAGGCAAATTTTATGATTTCTCGTT
TGAAATCTGAAGAAAGGGTTGTAACAAAAgcctttcatttttcaatttga
tCTTAAGATTGATCACCAATGTTTAAATTGATAGCCAAGCAAGCTCAAAG
ATTCAGTAATACTTTTCT

Coding sequence (CDS) from alignment at scaffold_13:44653..45370

>TCONS_00047501 ID=TCONS_00047501|Name=TCONS_00047501|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_13:44653..45370 (Clytia hemisphaerica)
CACTCTGGATTGTTTGTGAATGACCAAAGTCGAAACTCCACCTTACAAAC
AGAGCTTAAACCACCAATAAGCTCTGCGCATTTTTCGGACATTGATGTCT
ATTTTTCGGACACTGAAGACTTAATCAGTGACACTATCGGAGTCATTTGT
GTCGACCATGATTTCAATGTCGCTTCTGCAATCTCAAGCGGTGGACTTGC
AATGAAGCAACCTGGTCGTTTGGGGCCGTGCACGAGCTTCGGAGCCGGAT
GTTGGTCCTTTACATATGATGAAAACACAACGATTTCCGCATGTTGTTCT
GGTACGGGAGAGGCGATAATACGGACACACCTTGCTCAGAACGCGTGTGA
TTTCTTGTACCGTGATCCTGGGAATATACTGAAATTAGATTCCTTTATTA
ACGATTATTTCACTTCTTCAAGACTTGTACCTGATCACTTGGAACCGAGG
CTGTGTGGGTTGCTATTGGTAACGCTCAgtaaaaacaaagatggtagaAA
AGCTATGATTGACTTTCAATTGGTTCACACGGCTGATTCTTTTTGTGTGA
GCTGTATTTCTGCCGGTGAGAAGGAGGCAAATTTTATGATTTCTCGTTTG
AAATCTGAAGAAAGGGTTGTAACAAAAgcctttcatttttcaatttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030256XLOC_030256Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047501-proteinTCONS_00047501-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047501-exon-scaffold_13-1491911889:44653..45370TCONS_00047501-exon-scaffold_13-1491911889:44653..45370Clytia hemisphaericaexon
TCONS_00047501-exon-scaffold_13-1510915933:44653..45370TCONS_00047501-exon-scaffold_13-1510915933:44653..45370Clytia hemisphaericaexon
TCONS_00047501-exon-scaffold_13-1575043694:44653..45370TCONS_00047501-exon-scaffold_13-1575043694:44653..45370Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:44653..45370 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.66996	3.3305	3.23567	3.01118	2.53788	1.70836	1.70262	2.68458	1.8208	1.67333	1.34171	0.928408	1.43703	1.20353	1.26651	1.23174	2.56388	0.85809	0.666842	0.155067	0.404345	0.690288	6.63316	4.50472	1.34703	0.935035	1.14688	0.407995	4.40966	4.72921
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000246Peptidase_T2
IPR029055Ntn_hydrolases_N
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity
Blast
[Close]
BLAST of TCONS_00047501 vs. Swiss-Prot (Human)
Match: TASP1 (Threonine aspartase 1 OS=Homo sapiens GN=TASP1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.877e-21
Identity = 58/171 (33.92%), Postives = 92/171 (53.80%), Query Frame = -3 
Query:  117 DTIGVICVDHDFNVASAISSGGLAMKQPGRLGPCTSFGAGCWSFTYDENT------TISACCSGTGEAIIRTHLAQNACDFLYRDPGNILKLDSFINDYFTSSRLVPDHLEPRLCGLLLVTLS--------KNKDGRKAMIDFQLVHTADSFCVSCISAGEKEANFMISRL 587
            DT+G + VDH+ NVA+A+SSGGLA+K PGR+G    +G GCW+    ENT      + +   SG GE ++RT LA+     L  +  +   L++  N + +S  L     E  + G ++V  S         +++ +  +++F   HT +S CV  +SA + +A   ISRL
Sbjct:  233 DTVGAVVVDHEGNVAAAVSSGGLALKHPGRVGQAALYGCGCWA----ENTGAHNPYSTAVSTSGCGEHLVRTILARECSHALQAEDAHQALLETMQNKFISSPFLAS---EDGVLGGVIVLRSCRCSAEPDSSQNKQTLLVEFLWSHTTESMCVGYMSAQDGKAKTHISRL 396
The following BLAST results are available for this feature:
BLAST of TCONS_00047501 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TASP12.877e-2133.92Threonine aspartase 1 OS=Homo sapiens GN=TASP1 PE=... [more]
back to top