TCONS_00047505 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047505
Unique NameTCONS_00047505
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length776

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047505 ID=TCONS_00047505|Name=TCONS_00047505|organism=Clytia hemisphaerica|type=transcript|length=776bp
TTAATTGATTGAgtgccaaaaattaaaaaaatgtgagACATAAAATTTCA
CCTATATTTCCCTTGTGTAAGCCACATTTTTGCCCACTTAACAAATTGTA
AgtctcaaataaaaaatgtaaaaaaatttcttggaaGGGTAAGCCACATG
ACCAGTATGTAATGAATAGCTAATTTCCTCAGCTTAACCATCAAAGCAAT
CCTAAGTGTAAGCCACATAATGTTCTCAAGTTATGGTCAATTTAGTGGCG
GGCAgtaaaaaagtcacaaaaaggGGTTCATTTTTGATTGGGATCCAACC
CAAATGCTATTAAGACTCCAATGACAAATAGACATCGGCGTTTCCCTCta
gttttttaagaaatttatgaTTGTCATGAAGAGAAGGTGATCTATATTCT
CTGCCATTGTTGTAGCGGTACATCTTggtgctaaaaatgaaaattgagat
TGCAGAGATTGTCGGTACTCTAATAGAAATTAGATCTTGTATAGAGGGAT
CCTCAAgttgtgaattatttttctcGAGCAAGGAATGAGTAGTAGAAAGA
GGTAGATATGAATTCTTGAGTGTTGAAATGTGTTAGGAGTAGAGATTATA
CTCAATGAAATGCGTGACTTTAAAGATTGGAAAGATTCAGTGGTAGGCTT
AGGTTTGGAGAACGTACGGTCCAGAGATAAAAAGTCTAGTCATGTGGGTT
TGTGTTGGAACGTTGGAATAGTGTTATAGTGATAATAGTATACGAAATGA
TAGAATTGTTTTAAATTTAGCTGGAA
Run BLAST on NCBI

transcript from alignment at scaffold_13:178995..179770

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047505 ID=TCONS_00047505|Name=TCONS_00047505|organism=Clytia hemisphaerica|type=transcript|length=776bp|location=Sequence derived from alignment at scaffold_13:178995..179770 (Clytia hemisphaerica)
TTCCAGCTAAATTTAAAACAATTCTATCATTTCGTATACTATTATCACTA
TAACACTATTCCAACGTTCCAACACAAACCCACATGACTAGACTTTTTAT
CTCTGGACCGTACGTTCTCCAAACCTAAGCCTACCACTGAATCTTTCCAA
TCTTTAAAGTCACGCATTTCATTGAGTATAATCTCTACTCCTAACACATT
TCAACACTCAAGAATTCATATCTACCTCTTTCTACTACTCATTCCTTGCT
CgagaaaaataattcacaacTTGAGGATCCCTCTATACAAGATCTAATTT
CTATTAGAGTACCGACAATCTCTGCAatctcaattttcatttttagcacc
AAGATGTACCGCTACAACAATGGCAGAGAATATAGATCACCTTCTCTTCA
TGACAAtcataaatttcttaaaaaactaGAGGGAAACGCCGATGTCTATT
TGTCATTGGAGTCTTAATAGCATTTGGGTTGGATCCCAATCAAAAATGAA
CCcctttttgtgacttttttacTGCCCGCCACTAAATTGACCATAACTTG
AGAACATTATGTGGCTTACACTTAGGATTGCTTTGATGGTTAAGCTGAGG
AAATTAGCTATTCATTACATACTGGTCATGTGGCTTACCCttccaagaaa
tttttttacattttttatttgagacTTACAATTTGTTAAGTGGGCAAAAA
TGTGGCTTACACAAGGGAAATATAGGTGAAATTTTATGTctcacattttt
ttaatttttggcacTCAATCAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030260XLOC_030260Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047505-exon-scaffold_13-1491911889:178995..179770TCONS_00047505-exon-scaffold_13-1491911889:178995..179770Clytia hemisphaericaexon
TCONS_00047505-exon-scaffold_13-1510915933:178995..179770TCONS_00047505-exon-scaffold_13-1510915933:178995..179770Clytia hemisphaericaexon
TCONS_00047505-exon-scaffold_13-1575043694:178995..179770TCONS_00047505-exon-scaffold_13-1575043694:178995..179770Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:178995..179770 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.196306	0.244066	0.850153	0.695171	0.424526	0.200036	0.728308	0.753115	0.113715	0.130623	0.211318	0.126441	0.130573	0.296589	0.108625	0.038436	0.190917	0.048534	0.302824	0	0.243761	0.0885252	0	0.131868	0	0.561771	0.347755	0.0915651	0.0694489	0.21474
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047505 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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