TCONS_00047509 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047509
Unique NameTCONS_00047509
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047509 ID=TCONS_00047509|Name=TCONS_00047509|organism=Clytia hemisphaerica|type=transcript|length=472bp
TTTATCAAATACTTTCTATTTAAAATTAAGAATTATGAACTGGAAATAAT
AGatcaattttgataaattaaatGTAAATAATCAGTTACATAATGGAACA
TATAGTAATAAAAAATGGTGTATATTACATAATAGTTTATGTAAGTACGA
CTGTAAACCAGATTGTCAAACAAACGTCCGTGTCCAagagttgaaaattg
aatagaCGTTTGTTGGTGACGGTGACACAAAACTTTAATGAACTGGATAG
TTGCGTACTAACATGAAAGCTGGATAGTTGCGTGctaaaaaattcaagag
aagTGAGATAAAGATcacaaaactggtttttaggccttttaCTTCATCAA
ATGtcatcatagtataagaaagccgcggctggaatgataacatctgaatt
tctgttattctatctctgtcgtatttgatgactatttgttgatcatgaaa
tcagtaatgtagcatatttaat
Run BLAST on NCBI

transcript from alignment at scaffold_130:15235..15822+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047509 ID=TCONS_00047509|Name=TCONS_00047509|organism=Clytia hemisphaerica|type=transcript|length=588bp|location=Sequence derived from alignment at scaffold_130:15235..15822+ (Clytia hemisphaerica)
TTTATCAAATACTTTCTATTTAAAATTAAGAATTATGAACTGGAAATAAT
AGatcaattttgataaattaaatGTAAATAATCAGTTACATAATGGAACA
TATAGTAATAATAGTTTtataaataacaaaattttcttttttatattcaa
aAGTAAATATTACAGCGATCTTAAATATTTTAGCAGCGGAATGTATATCA
TTTACATAATGGAACATATAGTAATAAAAAATGGTGTATATTACATAATA
GTTTATGTAAGTACGACTGTAAACCAGATTGTCAAACAAACGTCCGTGTC
CAagagttgaaaattgaatagaCGTTTGTTGGTGACGGTGACACAAAACT
TTAATGAACTGGATAGTTGCGTACTAACATGAAAGCTGGATAGTTGCGTG
ctaaaaaattcaagagaagTGAGATAAAGATcacaaaactggtttttagg
ccttttaCTTCATCAAATGtcatcatagtataagaaagccgcggctggaa
tgataacatctgaatttctgttattctatctctgtcgtatttgatgacta
tttgttgatcatgaaatcagtaatgtagcatatttaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030264XLOC_030264Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047509-exon-scaffold_130-1491911889:15235..15323TCONS_00047509-exon-scaffold_130-1491911889:15235..15323Clytia hemisphaericaexon
TCONS_00047509-exon-scaffold_130-1510915933:15235..15323TCONS_00047509-exon-scaffold_130-1510915933:15235..15323Clytia hemisphaericaexon
TCONS_00047509-exon-scaffold_130-1575043694:15235..15323TCONS_00047509-exon-scaffold_130-1575043694:15235..15323Clytia hemisphaericaexon
TCONS_00047509-exon-scaffold_130-1491911889:15440..15822TCONS_00047509-exon-scaffold_130-1491911889:15440..15822Clytia hemisphaericaexon
TCONS_00047509-exon-scaffold_130-1510915933:15440..15822TCONS_00047509-exon-scaffold_130-1510915933:15440..15822Clytia hemisphaericaexon
TCONS_00047509-exon-scaffold_130-1575043694:15440..15822TCONS_00047509-exon-scaffold_130-1575043694:15440..15822Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_130supercontigscaffold_130:15235..15822 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.0476	0	3.66304	4.29667	0	0	8.23447	5.33771	8.55396	0	0	0	5.55515	8.47605	0	1.80076	1.36618	0	0	0	3.08284	0	0	0	4.76136	22.3403	0	0	0	2.51378
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047509 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top