TCONS_00047510 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047510
Unique NameTCONS_00047510
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047510 ID=TCONS_00047510|Name=TCONS_00047510|organism=Clytia hemisphaerica|type=transcript|length=464bp
ATACTTTCTATTTAAAATTAAGAATTATGAACTGGAAATAATAGatcaat
tttgataaattaaatGTAAATAATCAGTTACATAATGGAACATATAGTAA
TAAAAAATGGTGTATATTACATAATAGTTTATGTAAGTACGACTGTAAAC
CAGATTGTCAAACAAACGTCCGTGTCCAagagttgaaaattgaatagaCG
TTTGTTGGTGACGGTGACACAAAACTTTAATGAACTGGATAGTTGCGTAC
TAACATGAAAGCTGGATAGTTGCGTGctaaaaaattcaagagaagTGAGA
TAAAGATcacaaaactggtttttaggccttttaCTTCATCAAATGtcatc
atagtataagaaagccgcggctggaatgataacatctgaatttctgttat
tctatctctgtcgtatttgatgactatttgttgatcatgaaatcagtaat
gtagcatatttaat
Run BLAST on NCBI

transcript from alignment at scaffold_130:15243..15822+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047510 ID=TCONS_00047510|Name=TCONS_00047510|organism=Clytia hemisphaerica|type=transcript|length=580bp|location=Sequence derived from alignment at scaffold_130:15243..15822+ (Clytia hemisphaerica)
ATACTTTCTATTTAAAATTAAGAATTATGAACTGGAAATAATAGatcaat
tttgataaattaaatGTAAATAATCAGTTACATAATGGAACATATAGTAA
TAATAGTTTtataaataacaaaattttcttttttatattcaaaAGTAAAT
ATTACAGCGATCTTAAATATTTTAGCAGCGGAATGTATATCATTTACATA
ATGGAACATATAGTAATAAAAAATGGTGTATATTACATAATAGTTTATGT
AAGTACGACTGTAAACCAGATTGTCAAACAAACGTCCGTGTCCAagagtt
gaaaattgaatagaCGTTTGTTGGTGACGGTGACACAAAACTTTAATGAA
CTGGATAGTTGCGTACTAACATGAAAGCTGGATAGTTGCGTGctaaaaaa
ttcaagagaagTGAGATAAAGATcacaaaactggtttttaggccttttaC
TTCATCAAATGtcatcatagtataagaaagccgcggctggaatgataaca
tctgaatttctgttattctatctctgtcgtatttgatgactatttgttga
tcatgaaatcagtaatgtagcatatttaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030264XLOC_030264Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047510-exon-scaffold_130-1491911889:15243..15333TCONS_00047510-exon-scaffold_130-1491911889:15243..15333Clytia hemisphaericaexon
TCONS_00047510-exon-scaffold_130-1510915933:15243..15333TCONS_00047510-exon-scaffold_130-1510915933:15243..15333Clytia hemisphaericaexon
TCONS_00047510-exon-scaffold_130-1575043694:15243..15333TCONS_00047510-exon-scaffold_130-1575043694:15243..15333Clytia hemisphaericaexon
TCONS_00047510-exon-scaffold_130-1491911889:15450..15822TCONS_00047510-exon-scaffold_130-1491911889:15450..15822Clytia hemisphaericaexon
TCONS_00047510-exon-scaffold_130-1510915933:15450..15822TCONS_00047510-exon-scaffold_130-1510915933:15450..15822Clytia hemisphaericaexon
TCONS_00047510-exon-scaffold_130-1575043694:15450..15822TCONS_00047510-exon-scaffold_130-1575043694:15450..15822Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_130supercontigscaffold_130:15243..15822 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.36939	5.2757e-08	0	6.07462	4.32737	0	2.60155	0	8.21921	4.67751	7.86284	0.0187442	0	2.1571	0	0	1.69012	1.93357	2.75094	1.53061e-08	2.93136	1.14068	1.22695	17.0129	0	0.722033	1.41627	3.00027	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047510 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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