TCONS_00047519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047519
Unique NameTCONS_00047519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3202

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047519 ID=TCONS_00047519|Name=TCONS_00047519|organism=Clytia hemisphaerica|type=transcript|length=3202bp
GGAGAAGGATTTCGTTCATGTGACCATAAGAGGAACCCCCGGAGGCCCTA
TCATATCATGTTCGTTTCAGCTGTTTGGAATGCTATCAGATTCAATGGAG
GAAATGTTTGGAGAAGGAGATGATGATTGGGAAGGTGTAAAGTGCTGTCA
TGCTCGACTGGCCAAGGATATCCTTATAAAGAAACCGATGATGTTTGTGC
CAAACGAATCAGATCATTTATCGCTTCCTCCGTATTATCTAAACGAAACG
TTACTGAAAAAAGGAGAAGAATTGGCAAAAGAACCCATTGTCAAATTACC
ATCGAATAGCAATGTTCACAAATTTTCGGTCGTCGACGATGTTGGGCATC
CAAGCCTTGTGACCctttttctggcaaaaaaaaacaaaaaccctTATCAT
CACCTGTCATGACAAATATTGCCAGGCAACTGATACGAGGGAGAGAAGTG
CAAAAAAGTATTTCGAAACTGATGACCTTTGCACTCATTTGAAGAAACTC
AAATCCTGCTTTGATGTATCTACGCTGACGTTTTCAAGCGAAGATTGCGA
CGACGACGCCGATGATGACAAAGAAGTAGAAGAAAACGACGATGCAAATA
TTCAACCTGTCTTCACACAGAAACCAAATGAAAAGGTGTTTGACGAGGAG
CTCAAGCAGTGGCAGTTTCACAATTGCGCTACAAGCAAACAATCAGTCGA
TCAAGATCCCTTTTACGAAACGTTGATGTCAAAGGTTgaggaattttcac
tgaaaattttcaaacggGAAGATATACAATTAATACCTGACAAGACAGGC
TCGTGTGAATGTGAGGTATGACCACCACTTTTAAAACTGGATAATAATGT
TTtattatttgagaaaattcaaattcaaaaaatttaatgatttgaaattt
taaaaataatgacaaaaataGAAGAACAGAAAGTTCAACTTCTGACCATA
GTTTGTTCGTAATTCGGTATATCGAAGTTTAATGACATAATGACACAATG
ACATCTTGTTTGAGCAGAAGAACCGGAATAAATTCATGCAACTCCAAAGT
CATTTGCAattatactgtaatttagtACTACCATAAAGTTTGTTTTCCTT
TCGTTCAGGGTGTATGGTTCACTGAAGATATTCCCGATGGTCATTTGATT
CCTGATGGCGAAACCACGCTTTATACCTCAGCTGGTGCTGTTGATGCCAA
AATATTCAAGCGAAGGTGCATCAAAGGATCGTGCATTCGAAAATATGGTT
TCGAAGATTGTATTTATCGCTCATCCCCGAGTGTAGCCTGCAGTTGGGAA
ATGGGGTGGGAATTCGTGGATTTGGTTATGACCAGTCGCCAAACATTTTC
CGGTTTTGTAAAGTTCTACAAACGAAAATACAAACgtgcaaaatcaaaaa
agactttCATGTCGAGAAACACGTTCATCAAGTGGTGGTTTTCCTGGGCA
TCATCTATGAAAATCAACTTCAGGAAAAAATGTTTCGGTTGCGGCGACAA
ACTAAAATGCTTGGCTGCAGACGGTACCAAAATAGGAATCACATTGAAAC
AGTCTGACGTGGTTCCGATCGAGACGGCAGAAGGtgaaccaatcaaaacg
ctcACACGAAGGTACGGACGCACCTTCATCAATAACAACAACACGACCGG
TAAACGAGCTGATGTCAACAAGGCAGTCTCAGAGTTGGCAAACCATGTGA
TGGGGAAGAACAAGCTTGATCAAGAAAAGATCGATGAACATCTTGAAATG
GTCAAACATGATTGCAAAGACAAAGTGATCGTTGATGTAGTCAACAAATT
GTTTGTCCAATCAGTGCATCCACTTGAACGCGGTTCATTGGCGAAAGTTC
TTCACGTATTGACCACAGATGCCAGCATCACCAACACAATacctaaaaaa
tatattgaaatgCTCAAAAAGACAGTCGACTCTGAAGTAACGAAAGATGC
TACATTCAAAGATACCTTTCACTGCATTACGAAGCACTTTTTTCCCGAGC
TGGGAGATTGGTATGTTATTACAACCAATCTCTCAAATGGTATCATTGAT
CCCTACGTGAAAGATTTTATCACCAAGCTCGTATCGATGAGAGAAAAACT
AGAGGAAAATAACATTCCACCTCAGGCATCATCCATGTTCGACGTTTACA
ACCCAGCAAAAACAGGGAGAGCCTACTATTTCACTGATCACGGTAATCAG
ATCAGGAAGCCACGTGTGTTCTCCATTGACCGTGATAATGAGAAAAAGAA
AGGTAACTTTGATGATACACCTGATGTACCATGCTCAAAGATTTTCCCTA
ATGTATCCCACAAAGGTACGACTTACCTTTTCCTTTGGTTCTGTCCGAGT
CACGGCCATTGCTGGGGATACCACATCATTACATCGTCTGAGGGTCGCAA
GGATGCTGCCAACTCGCTTTACTCGTATCTAGAAAAAGcaccagaaaata
ttttttatgacttctcttGCTCCTTGGAGGAGTACTGTAGAAACAGAGAG
AATGGATTTTTTGCTGACACAAGATTTTTCCATGACATTTTTCATGGCTA
CACGCATAAATGTTCACTCACATACAAATCACGCCGTTTGTTGGGATTCA
AAGGAGTGAACACTTCAATCTGTGAGCAGTTTAATAGCTTTCTACAATGT
GTCAAGACGTCTGGCAAACTAATGACCCAGGAACATTTTACGTTTTATGT
TGAATTCTTCATACACCAATGGAATGTTGctagaaaaatatcttttgaaa
agaGGGCATCTATTGCTGTAGCTGGATATAATTAAAAATGTGtactattt
tatttttcaaataagtTTACGTGATTGAAGTAAGACGACAAAAATGCAAA
GGCTTGAAATGTGGTTTCATCTCGAAGGGATCGTAAAAATTGGTGTTTAT
ACTAAAGCATTTTGgttgataaatatttttaaccttttaGAACTGACTCT
GAGTGCATGAGTCTGTAAACACTATTTTCTAGCCTCGCAATAAGACTACT
CTTGTTAAATCTAACATTAATATTCATTCATTGTCACATCATTATTTCAA
TTACAagttattgtttattttgagtAAGGTTATTTACACTTTGAAGTATT
TCATTAAATAAATCATTAATTTGGTGGTTGAATGTTTTCAGTTTGTCAAA
ATGATTAATTTTGATCATTCCAAAtaaatttgattgttttgatattcatt
tt
Run BLAST on NCBI

transcript from alignment at scaffold_131:32937..36545+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047519 ID=TCONS_00047519|Name=TCONS_00047519|organism=Clytia hemisphaerica|type=transcript|length=3609bp|location=Sequence derived from alignment at scaffold_131:32937..36545+ (Clytia hemisphaerica)
GGAGAAGGATTTCGTTCATGTGACCATAAGAGGAACCCCCGGAGGCCCTA
TCATATCATGTTCGTTTCAGCTGTTTGGAATGCTATCAGATTCAATGGAG
GAAATGTTTGGAGAAGGAGATGATGATTGGGAAGGTGTAAAGTGCTGTCA
TGCTCGACTGGCCAAGGATATCCTTATAAAGAAACCGATGATGTTTGTGC
CAAACGAATCAGATCATTTATCGCTTCCTCCGTATTATCTAAACGAAACG
TTACTGAAAAAAGGAGAAGAATTGGCAAAAGAACCCATTGTCAAATTACC
ATCGAATAGCAATGTTCACAAATTTTCGGTCGTCGACGATGTTGGGCATC
CAAGCCTTGTGACCctttttctggcaaaaaaaaacaaaaaccctTATCAT
CACCTGTCATGACAAATATTGCCAGGCAACTGATACGAGGGAGAGAAGTG
CAAAAAAGTATTTCGAAACTGATGACCTTTGCACTCATTTGAAGAAACTC
AAATCCTGCTTTGATGTATCTACGCTGACGTTTTCAAGCGAAGATTGCGA
CGACGACGCCGATGATGACAAAGAAGTAGAAGAAAACGACGATGCAAATA
TTCAACCTGTCTTCACACAGGTACTTCAGTAATATTCTTTTTAGGGCGAA
AAATTAGCATTAATAAGTATAAAATTATAAATCCTAAGTACTTTTGAATA
CATTTCGAGCTTAAAGGAAAAGGTAAAAAAGGGTTAATTTCTGATCCAGA
TAAAATtcaagaaatgatttttttgcactttgtcGACCCTAAATTtcgaa
atatttatttttattataccgaccgacccatattacGATCTGGccataga
acaacaaatttaatttctaacgcctattttagcaaaaatgaGATTTACAA
ACAAGTTTATATCCTAGGAATCATATACAAATACACACTACCATTTTTGA
AAGTGGACCCCCCCTGGTATcgatatataaaaaaatagtgAATAATTTAA
TGCTCTTAAATAACAATTGTCTCATAGAAACCAAATGAAAAGGTGTTTGA
CGAGGAGCTCAAGCAGTGGCAGTTTCACAATTGCGCTACAAGCAAACAAT
CAGTCGATCAAGATCCCTTTTACGAAACGTTGATGTCAAAGGTTgaggaa
ttttcactgaaaattttcaaacggGAAGATATACAATTAATACCTGACAA
GACAGGCTCGTGTGAATGTGAGGTATGACCACCACTTTTAAAACTGGATA
ATAATGTTTtattatttgagaaaattcaaattcaaaaaatttaatgattt
gaaattttaaaaataatgacaaaaataGAAGAACAGAAAGTTCAACTTCT
GACCATAGTTTGTTCGTAATTCGGTATATCGAAGTTTAATGACATAATGA
CACAATGACATCTTGTTTGAGCAGAAGAACCGGAATAAATTCATGCAACT
CCAAAGTCATTTGCAattatactgtaatttagtACTACCATAAAGTTTGT
TTTCCTTTCGTTCAGGGTGTATGGTTCACTGAAGATATTCCCGATGGTCA
TTTGATTCCTGATGGCGAAACCACGCTTTATACCTCAGCTGGTGCTGTTG
ATGCCAAAATATTCAAGCGAAGGTGCATCAAAGGATCGTGCATTCGAAAA
TATGGTTTCGAAGATTGTATTTATCGCTCATCCCCGAGTGTAGCCTGCAG
TTGGGAAATGGGGTGGGAATTCGTGGATTTGGTTATGACCAGTCGCCAAA
CATTTTCCGGTTTTGTAAAGTTCTACAAACGAAAATACAAACgtgcaaaa
tcaaaaaagactttCATGTCGAGAAACACGTTCATCAAGTGGTGGTTTTC
CTGGGCATCATCTATGAAAATCAACTTCAGGAAAAAATGTTTCGGTTGCG
GCGACAAACTAAAATGCTTGGCTGCAGACGGTACCAAAATAGGAATCACA
TTGAAACAGTCTGACGTGGTTCCGATCGAGACGGCAGAAGGtgaaccaat
caaaacgctcACACGAAGGTACGGACGCACCTTCATCAATAACAACAACA
CGACCGGTAAACGAGCTGATGTCAACAAGGCAGTCTCAGAGTTGGCAAAC
CATGTGATGGGGAAGAACAAGCTTGATCAAGAAAAGATCGATGAACATCT
TGAAATGGTCAAACATGATTGCAAAGACAAAGTGATCGTTGATGTAGTCA
ACAAATTGTTTGTCCAATCAGTGCATCCACTTGAACGCGGTTCATTGGCG
AAAGTTCTTCACGTATTGACCACAGATGCCAGCATCACCAACACAATacc
taaaaaatatattgaaatgCTCAAAAAGACAGTCGACTCTGAAGTAACGA
AAGATGCTACATTCAAAGATACCTTTCACTGCATTACGAAGCACTTTTTT
CCCGAGCTGGGAGATTGGTATGTTATTACAACCAATCTCTCAAATGGTAT
CATTGATCCCTACGTGAAAGATTTTATCACCAAGCTCGTATCGATGAGAG
AAAAACTAGAGGAAAATAACATTCCACCTCAGGCATCATCCATGTTCGAC
GTTTACAACCCAGCAAAAACAGGGAGAGCCTACTATTTCACTGATCACGG
TAATCAGATCAGGAAGCCACGTGTGTTCTCCATTGACCGTGATAATGAGA
AAAAGAAAGGTAACTTTGATGATACACCTGATGTACCATGCTCAAAGATT
TTCCCTAATGTATCCCACAAAGGTACGACTTACCTTTTCCTTTGGTTCTG
TCCGAGTCACGGCCATTGCTGGGGATACCACATCATTACATCGTCTGAGG
GTCGCAAGGATGCTGCCAACTCGCTTTACTCGTATCTAGAAAAAGcacca
gaaaatattttttatgacttctcttGCTCCTTGGAGGAGTACTGTAGAAA
CAGAGAGAATGGATTTTTTGCTGACACAAGATTTTTCCATGACATTTTTC
ATGGCTACACGCATAAATGTTCACTCACATACAAATCACGCCGTTTGTTG
GGATTCAAAGGAGTGAACACTTCAATCTGTGAGCAGTTTAATAGCTTTCT
ACAATGTGTCAAGACGTCTGGCAAACTAATGACCCAGGAACATTTTACGT
TTTATGTTGAATTCTTCATACACCAATGGAATGTTGctagaaaaatatct
tttgaaaagaGGGCATCTATTGCTGTAGCTGGATATAATTAAAAATGTGt
actattttatttttcaaataagtTTACGTGATTGAAGTAAGACGACAAAA
ATGCAAAGGCTTGAAATGTGGTTTCATCTCGAAGGGATCGTAAAAATTGG
TGTTTATACTAAAGCATTTTGgttgataaatatttttaaccttttaGAAC
TGACTCTGAGTGCATGAGTCTGTAAACACTATTTTCTAGCCTCGCAATAA
GACTACTCTTGTTAAATCTAACATTAATATTCATTCATTGTCACATCATT
ATTTCAATTACAagttattgtttattttgagtAAGGTTATTTACACTTTG
AAGTATTTCATTAAATAAATCATTAATTTGGTGGTTGAATGTTTTCAGTT
TGTCAAAATGATTAATTTTGATCATTCCAAAtaaatttgattgttttgat
attcatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030270XLOC_030270Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047519-exon-scaffold_131-1491911889:32937..33556TCONS_00047519-exon-scaffold_131-1491911889:32937..33556Clytia hemisphaericaexon
TCONS_00047519-exon-scaffold_131-1510915933:32937..33556TCONS_00047519-exon-scaffold_131-1510915933:32937..33556Clytia hemisphaericaexon
TCONS_00047519-exon-scaffold_131-1575043694:32937..33556TCONS_00047519-exon-scaffold_131-1575043694:32937..33556Clytia hemisphaericaexon
TCONS_00047519-exon-scaffold_131-1491911889:33964..36545TCONS_00047519-exon-scaffold_131-1491911889:33964..36545Clytia hemisphaericaexon
TCONS_00047519-exon-scaffold_131-1510915933:33964..36545TCONS_00047519-exon-scaffold_131-1510915933:33964..36545Clytia hemisphaericaexon
TCONS_00047519-exon-scaffold_131-1575043694:33964..36545TCONS_00047519-exon-scaffold_131-1575043694:33964..36545Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_131supercontigscaffold_131:32937..36545 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.106607	6.70315e-05	1.32725	0	1.25276	1.11041	0	0	0	0	0	5.50018e-08	0	0	0	0	1.96745e-10	0	0.00170935	2.8885e-05	0.294794	0.101847	2.24298e-08	1.74954	0.486305	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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