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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047521 ID=TCONS_00047521|Name=TCONS_00047521|organism=Clytia hemisphaerica|type=transcript|length=2931bpRun BLAST on NCBI transcript from alignment at scaffold_131:104823..133501+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047521 ID=TCONS_00047521|Name=TCONS_00047521|organism=Clytia hemisphaerica|type=transcript|length=28679bp|location=Sequence derived from alignment at scaffold_131:104823..133501+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00047521 vs. Swiss-Prot (Human)
Match: SUCHY (Succinate--hydroxymethylglutarate CoA-transferase OS=Homo sapiens GN=SUGCT PE=1 SV=2) HSP 1 Score: 392.889 bits (1008), Expect = 8.436e-126 Identity = 193/411 (46.96%), Postives = 269/411 (65.45%), Query Frame = 3
Query: 420 WSGGR*NKDFSMKGPLAGIRICDMTRVLAGPYCTMVLADIGAEVIKIEKPGSGDDTRKWGPPFINGHSYYFLSINRNKKSLAVDVATKSGREIIHELSKKSDVFIENFVPEKLDSMSLGYNAISKVNPQIIYCSLTGYGSRGPDKLLPGYDLMASAIGGGMHITGQKDGRPMRHGVATTDILTGLYAHSAIIAALYERTLSGKGKKIDCSLLQSQIASMHSHASSYLNANQSTTRMGTEHPNISPYQAFDAKDGCFVIAAANDKHFRSLCHALELSDIAMDGRFITNPKRVENRDILTNIIQEKISEHSTDYWIHRLEESGVPCGPVNDIGQAYEQPMVKNR--IQEFDDPIYGHLRLPGPAVDFEYDDFGEETSIPSPPPLLGEHTRKVLQDILNFDAPHIQDLLDRKVI 1646
W+G R D + PL G++I D+TRVLAGP+ TM L D+GAEVIK+E+PG+GDDTR WGPPF+ S Y+LS+NRNKKS+AV++ G +II EL+ DVF+EN+VP KL +M LGY I ++ P IIYCS+TGYG GP GYD +ASA+ G MHITG ++G P+R GVA TD+ TGLYA+ AI+A L ++ +GKG IDC+LL SQ+A + A++YL + R GT H +I PYQAF KDG V+ A N++ F ++C L+L ++ + ++ TN RV NR L I+ E+ E T W++ E SGVP GP+N++ + +P V + + E + P G + +PGPAV Y F + S PPPLLG+HT +L+++L +D I +LL V+
Sbjct: 34 WTG-RPQSDMNNIKPLEGVKILDLTRVLAGPFATMNLGDLGAEVIKVERPGAGDDTRTWGPPFVGTESTYYLSVNRNKKSIAVNIKDPKGVKIIKELAAVCDVFVENYVPGKLSAMGLGYEDIDEIAPHIIYCSITGYGQTGPISQRAGYDAVASAVSGLMHITGPENGDPVRPGVAMTDLATGLYAYGAIMAGLIQKYKTGKGLFIDCNLLSSQVACLSHIAANYLIGQKEAKRWGTAHGSIVPYQAFKTKDGYIVVGAGNNQQFATVCKILDLPELIDNSKYKTNHLRVHNRKELIKILSERFEEELTSKWLYLFEGSGVPYGPINNMKNVFAEPQVLHNGLVMEMEHPTVGKISVPGPAV--RYSKF--KMSEARPPPLLGQHTTHILKEVLRYDDRAIGELLSAGVV 439 The following BLAST results are available for this feature:
BLAST of TCONS_00047521 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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