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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047536 ID=TCONS_00047536|Name=TCONS_00047536|organism=Clytia hemisphaerica|type=transcript|length=1652bp
NNTCATGGCATCAAAGTTCTGTTCTACGCAGACAAATATCAGATGACTGC
CTTAAAGgacgaaattatcaaaaatcatgcttcaaattatttcaggatGG
AGAATTTCTTAAGCATGCTGCAATCAAAGGACTTCAAAGATTTATCAGAA
GATTTGAAAATAGAACTTGCTATAAAGTGCCTGTTCACTATTGCTTTTAA
ATCTTTGCCATTATCAGCAGAAAACAAAACCGAGTATATATCAGAGCTGA
CGGATATCATAGAGAGCTTGAAGACAAAGAAGAAACCAACCGAAAGAACT
TATGATCTtccttttcaaaatgttttcaaaaagccCACCGAACATAGCGA
TATTGAAATTGTAGTCAGCAAAACTGTTTCTTTTCACCTGCATaaacaaa
ctttgaagagaCTTTCTGGCAGATTTAAAGACttaattgaaaacaataaa
gaaGCTAATACAACGAAATTGAACGTGGAATTGAAGGATGGAGACCTAAA
CGCTTTTTTGCTTATGCTTCGATTTTTTTATCCTAAACATCAATTCCAAC
TTAAAGCCTACCATCAAATTGTGGAACTGTATGCTATGTGTGAAAGATTC
GATGTAGAATGGCTGAAAGTGTTGGTTAAAGAACAAGTTAATTCAATGCT
GAAAATTGGTAATATATCAAGCATATTAAGGTGCCTTCAAATTGCCGAAG
AAATTGATATGGTATCACTCAGATTTCAATTGTACTCCAAAATAGTaaac
atgtcaatgattaaagTGAAGGGATCGCACGAATATCAATATCTTGGTTA
CGTGGTACGATACAAAATCATGAAGTACAAGTTTAGATCAAGGTCTGATA
AAATGGAAGCAATATTTGGCTTGTTGGATGatatatttattcaaaaaatc
gaaaacttAAAAATAGTCGAGGAAGATCCACACGATGCACATGGACCTTA
TCCTCAGAtagaatgaatgaaaattaaatagtATGCATAAGATGGACCTC
CGAATGCTGGAAAATCCCCTGAAAATTATATTATCattagaagaaaaata
ttttctgatttcaaaaattatcataACCCTTGAAATGAGTAGTAATGTAA
ACAATGATTTTCTTCTGCATTTTATCAAAGGAGACAAGAGTGGCATCTCT
AGTTTAAACGGTTCACTTTTCACCctacctattctaattgtgaattaaag
tgggcataAAGTTGAATGTCtactaaagtcaatgcattacAAACTTTTga
agtcaatgcaatgacttctttctaGTCTTTCCCAAGCAAAGACTTCAACT
GCCAACTTTTTGTGCCCACTTTCTGCCTACTGTAACAATTAGAAGAATAT
ACAGGAAAGAAAGTCTGCCGTCCAAACTAGAGCTAAAGTATTCTTGCTTT
GGAAAATGTATAATGGATTACCTGATAAGGTGATATATTGGGATGCTCAG
TGCCCATACGAGTTGTAGATTGATTGGCGTTCAAATAACTGCTGGCATGT
GAGTGCATACTAGCTATCTGAAAGAATGAGAGAAGAAAGAaacctaaaaa
aattaaaaatataaaggAAAATAAAGGAAACTCTCTAATCTAAAAAGAGA
ATAATTTATGTAAAATATTTACTAAGGGTTTTTACAGGAATAATCTTTGC
AC Run BLAST on NCBI protein sequence of TCONS_00047536-protein >TCONS_00047536-protein ID=TCONS_00047536-protein|Name=TCONS_00047536-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
XHGIKVLFYADKYQMTALKDEIIKNHASNYFRMENFLSMLQSKDFKDLSE
DLKIELAIKCLFTIAFKSLPLSAENKTEYISELTDIIESLKTKKKPTERT
YDLPFQNVFKKPTEHSDIEIVVSKTVSFHLHKQTLKRLSGRFKDLIENNK
EANTTKLNVELKDGDLNAFLLMLRFFYPKHQFQLKAYHQIVELYAMCERF
DVEWLKVLVKEQVNSMLKIGNISSILRCLQIAEEIDMVSLRFQLYSKIVN
MSMIKVKGSHEYQYLGYVVRYKIMKYKFRSRSDKMEAIFGLLDDIFIQKI
ENLKIVEEDPHDAHGPYPQIE Run BLAST on NCBI transcript from alignment at scaffold_131:108314..110753- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047536 ID=TCONS_00047536|Name=TCONS_00047536|organism=Clytia hemisphaerica|type=transcript|length=2440bp|location=Sequence derived from alignment at scaffold_131:108314..110753- (Clytia hemisphaerica)
NNTCATGGCATCAAAGTTCTGTTCTACGCAGACAAATATCAGATGACTGC
CTTAAAGGACGAAATTATCAAAAATCATGCTTCAAATTATTTCAGGATGG
AGAATTTCTTAAGCATGCTGCAATCAAAGGACTTCAAAGATTTATCAGAA
GATTTGAAAATAGAACTTGCTATAAAGTGCCTGTTCACTATTGCTTTTAA
ATCTTTGCCATTATCAGCAGAAAACAAAACCGAGTATATATCAGAGCTGA
CGGATATCATAGAGAGCTTGAAGACAAAGAAGAAACCAACCGAAAGAACT
TATGATCTTCCTTTTCAAAATGTTTTCAAAAAGCCCACCGAACATAGCGA
TATTGAAATTGTAGTCAGCAAAACTGTTTCTTTTCACCTGCATAAACAAA
CTTTGAAGAGACTTTCTGGCAGATTTAAAGACTTAATTGAAAACAATAAA
GAAGCTAATACAACGAAATTGAACGTGGAATTGAAGGATGGAGACCTAAA
CGCTTTTTTGCTTATGCTTCGATTTTTTTATCCTAAACATCAATTCCAAC
TTAAAGGTAAAAACACATAGAGAAAGTGTCTACTTCACATCTATTGTTTC
ATTTTCAAAACNTTAAAGGTAAAAACACATAGAGAAAGTGTCTACTTTGC
ATCTATTGTTTCATTTTCAAAACAAAGTTAAAACGCATGCGTATTTATAA
ACTGTAAACTGTTAGTCGTTATTATACACAATACACAAAGAGGAATGGAT
ACGTAGGGGTGGATGGTACAGTCACTTTCGATCGGGGTTGTCGATGGTGA
AATTTGTCGTTCTTTTTAATGTTGCGAAGTAGGCACTTTCTGCCCCTCAA
AAAGTCCTCTCAATAACTAGCCTCTTTCGAAAGGTTTTTTTAATTTTTAT
GACATTTATTAATGGTATTCCATTTCTAACGTGTAAAGACTCTATGACAT
TTATGGACGGTATAGATTTTAGTGGTTCCATTTCTAATGTGTAAAGAAGT
CATACCATAAGCACACTGGCTCTATATTTATTATAGCTAAAATTTGAAAA
TATGCTGATAGGAGCTAAGAAAATGGTACTTCTGAGTATTTAGAAATCTA
GAAATTAGAATCTTCATAAATATGTTCGTTTTTTTTTCTTCATTTTTTGA
TTTTTCTTGAAAATTCGATTTTTAATCAACTTTGTAGTCGCTTAATTCCA
GTTTCCTGAAGCTTCCATCGCATTAATTCTAACTTTCGTTATTCCTCTAT
TTCCATCATTGAGCCCACAATGATAAGGTTGAAAGATCTCTCATCTTAGG
AATCTGTTATTATCTTCCTAGAAAGTCTTACTTTTTTCCTTCAGCCTACC
ATCAAATTGTGGAACTGTATGCTATGTGTGAAAGATTCGATGTAGAATGG
CTGAAAGTGTTGGTTAAAGAACAAGTTAATTCAATGCTGAAAATTGGTAA
TATATCAAGCATATTAAGGTGCCTTCAAATTGCCGAAGAAATTGATATGG
TATCACTCAGATTTCAATTGTACTCCAAAATAGTAAACATGTCAATGATT
AAAGTGAAGGGATCGCACGAATATCAATATCTTGGTTACGTGGTACGATA
CAAAATCATGAAGTACAAGTTTAGATCAAGGTCTGATAAAATGGAAGCAA
TATTTGGCTTGTTGGATGATATATTTATTCAAAAAATCGAAAACTTAAAA
ATAGTCGAGGAAGATCCACACGATGCACATGGACCTTATCCTCAGATAGA
ATGAATGAAAATTAAATAGTATGCATAAGATGGACCTCCGAATGCTGGAA
AATCCCCTGAAAATTATATTATCATTAGAAGAAAAATATTTTCTGATTTC
AAAAATTATCATAACCCTTGAAATGAGTAGTAATGTAAACAATGATTTTC
TTCTGCATTTTATCAAAGGAGACAAGAGTGGCATCTCTAGTTTAAACGGT
TCACTTTTCACCCTACCTATTCTAATTGTGAATTAAAGTGGGCATAAAGT
TGAATGTCTACTAAAGTCAATGCATTACAAACTTTTGAAGTCAATGCAAT
GACTTCTTTCTAGTCTTTCCCAAGCAAAGACTTCAACTGCCAACTTTTTG
TGCCCACTTTCTGCCTACTGTAACAATTAGAAGAATATACAGGAAAGAAA
GTCTGCCGTCCAAACTAGAGCTAAAGTATTCTTGCTTTGGAAAATGTATA
ATGGATTACCTGATAAGGTGATATATTGGGATGCTCAGTGCCCATACGAG
TTGTAGATTGATTGGCGTTCAAATAACTGCTGGCATGTGAGTGCATACTA
GCTATCTGAAAGAATGAGAGAAGAAAGAAACCTAAAAAAATTAAAAATAT
AAAGGAAAATAAAGGAAACTCTCTAATCTAAAAAGAGAATAATTTATGTA
AAATATTTACTAAGGGTTTTTACAGGAATAATCTTTGCAC Coding sequence (CDS) from alignment at scaffold_131:108314..110753- >TCONS_00047536 ID=TCONS_00047536|Name=TCONS_00047536|organism=Clytia hemisphaerica|type=CDS|length=1932bp|location=Sequence derived from alignment at scaffold_131:108314..110753- (Clytia hemisphaerica)
CCTACCATCAAATTGTGGAACTGTATGCTATGTGTGAAAGATTCGATGTA
GAATGGCTGAAAGTGTTGGTTAAAGAACAAGTTAATTCAATGCTGAAAAT
TGGTAATATATCAAGCATATTAAGGTGCCTTCAAATTGCCGAAGAAATTG
ATATGGTATCACTCAGATTTCAATTGTACTCCAAAATAGTAAACATGTCA
ATGATTAAAGTGAAGGGATCGCACGAATATCAATATCTTGGTTACGTGGT
ACGATACAAAATCATGAAGTACAAGTTTAGATCAAGGTCTGATAAAATGG
AAGCAATATTTGGCTTGTTGGATGATATATTTATTCAAAAAATCGAAAAC
TTAAAAATAGTCGAGGAAGATCCACACGATGCACATGGACCTTATCCTCA
GATAGAATGANNTCATGGCATCAAAGTTCTGTTCTACGCAGACAAATATC
AGATGACTGCCTTAAAGGACGAAATTATCAAAAATCATGCTTCAAATTAT
TTCAGGATGGAGAATTTCTTAAGCATGCTGCAATCAAAGGACTTCAAAGA
TTTATCAGAAGATTTGAAAATAGAACTTGCTATAAAGTGCCTGTTCACTA
TTGCTTTTAAATCTTTGCCATTATCAGCAGAAAACAAAACCGAGTATATA
TCAGAGCTGACGGATATCATAGAGAGCTTGAAGACAAAGAAGAAACCAAC
CGAAAGAACTTATGATCTTCCTTTTCAAAATGTTTTCAAAAAGCCCACCG
AACATAGCGATATTGAAATTGTAGTCAGCAAAACTGTTTCTTTTCACCTG
CATAAACAAACTTTGAAGAGACTTTCTGGCAGATTTAAAGACTTAATTGA
AAACAATAAAGAAGCTAATACAACGAAATTGAACGTGGAATTGAAGGATG
GAGACCTAAACGCTTTTTTGCTTATGCTTCGATTTTTTTATCCTAAACAT
CAATTCCAACTTAAAGCCTACCATCAAATTGTGGAACTGTATGCTATGTG
TGAAAGATTCGATGTAGAATGGCTGAAAGTGTTGGTTAAAGAACAAGTTA
ATTCAATGCTGAAAATTGGTAATATATCAAGCATATTAAGGTGCCTTCAA
ATTGCCGAAGAAATTGATATGGTATCACTCAGATTTCAATTGTACTCCAA
AATAGTAAACATGTCAATGATTAAAGTGAAGGGATCGCACGAATATCAAT
ATCTTGGTTACGTGGTACGATACAAAATCATGAAGTACAAGTTTAGATCA
AGGTCTGATAAAATGGAAGCAATATTTGGCTTGTTGGATGATATATTTAT
TCAAAAAATCGAAAACTTAAAAATAGTCGAGGAAGATCCACACGATGCAC
ATGGACCTTATCCTCAGATAGAATGANNTCATGGCATCAAAGTTCTGTTC
TACGCAGACAAATATCAGATGACTGCCTTAAAGGACGAAATTATCAAAAA
TCATGCTTCAAATTATTTCAGGATGGAGAATTTCTTAAGCATGCTGCAAT
CAAAGGACTTCAAAGATTTATCAGAAGATTTGAAAATAGAACTTGCTATA
AAGTGCCTGTTCACTATTGCTTTTAAATCTTTGCCATTATCAGCAGAAAA
CAAAACCGAGTATATATCAGAGCTGACGGATATCATAGAGAGCTTGAAGA
CAAAGAAGAAACCAACCGAAAGAACTTATGATCTTCCTTTTCAAAATGTT
TTCAAAAAGCCCACCGAACATAGCGATATTGAAATTGTAGTCAGCAAAAC
TGTTTCTTTTCACCTGCATAAACAAACTTTGAAGAGACTTTCTGGCAGAT
TTAAAGACTTAATTGAAAACAATAAAGAAGCTAATACAACGAAATTGAAC
GTGGAATTGAAGGATGGAGACCTAAACGCTTTTTTGCTTATGCTTCGATT
TTTTTATCCTAAACATCAATTCCAACTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047536-exon-scaffold_131-1575043694:110198..110753 | TCONS_00047536-exon-scaffold_131-1575043694:110198..110753 | Clytia hemisphaerica | exon |
| TCONS_00047536-exon-scaffold_131-1575043694:108314..109409 | TCONS_00047536-exon-scaffold_131-1575043694:108314..109409 | Clytia hemisphaerica | exon |
| TCONS_00047536-exon-scaffold_131-1510915933:110198..110753 | TCONS_00047536-exon-scaffold_131-1510915933:110198..110753 | Clytia hemisphaerica | exon |
| TCONS_00047536-exon-scaffold_131-1510915933:108314..109409 | TCONS_00047536-exon-scaffold_131-1510915933:108314..109409 | Clytia hemisphaerica | exon |
| TCONS_00047536-exon-scaffold_131-1491911889:110198..110753 | TCONS_00047536-exon-scaffold_131-1491911889:110198..110753 | Clytia hemisphaerica | exon |
| TCONS_00047536-exon-scaffold_131-1491911889:108314..109409 | TCONS_00047536-exon-scaffold_131-1491911889:108314..109409 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_131 | supercontig | scaffold_131:108314..110753 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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