TCONS_00047553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047553
Unique NameTCONS_00047553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length335

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047553 ID=TCONS_00047553|Name=TCONS_00047553|organism=Clytia hemisphaerica|type=transcript|length=335bp
tTTTACAGTGCCATCTCCTTCGgtgtggctgaaatttggtactatACCCT
CTAGTATCGACCAAATATAAATAATTCTGTATCTCTCTCNCTACAACAAT
GATCTCCATATCATAATGACCAATCCATATCATCCTGCTAACTAGCGCAC
TAGCACTAGCTAAAGCTGATCCATATTATTAGATATCCATATTATTATAT
CGATTGGTGGATGATATCAGATGTCCAGATAATTATATACCCACTGATTG
ATGATCCTTCTgtgatgaaatttgaaaaaaataaaacaaacaaacctttt
tcttgCTTATTAGAATCCATAACGAGATAACTAGC
Run BLAST on NCBI

transcript from alignment at scaffold_131:10675..11009

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047553 ID=TCONS_00047553|Name=TCONS_00047553|organism=Clytia hemisphaerica|type=transcript|length=335bp|location=Sequence derived from alignment at scaffold_131:10675..11009 (Clytia hemisphaerica)
GCTAGTTATCTCGTTATGGATTCTAATAAGcaagaaaaaggtttgtttgt
tttatttttttcaaatttcatcacAGAAGGATCATCAATCAGTGGGTATA
TAATTATCTGGACATCTGATATCATCCACCAATCGATATAATAATATGGA
TATCTAATAATATGGATCAGCTTTAGCTAGTGCTAGTGCGCTAGTTAGCA
GGATGATATGGATTGGTCATTATGATATGGAGATCATTGTTGTAGNGAGA
GAGATACAGAATTATTTATATTTGGTCGATACTAGAGGGTatagtaccaa
atttcagccacacCGAAGGAGATGGCACTGTAAAa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030286XLOC_030286Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047553-exon-scaffold_131-1491911889:10675..11009TCONS_00047553-exon-scaffold_131-1491911889:10675..11009Clytia hemisphaericaexon
TCONS_00047553-exon-scaffold_131-1510915933:10675..11009TCONS_00047553-exon-scaffold_131-1510915933:10675..11009Clytia hemisphaericaexon
TCONS_00047553-exon-scaffold_131-1575043694:10675..11009TCONS_00047553-exon-scaffold_131-1575043694:10675..11009Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_131supercontigscaffold_131:10675..11009 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.01941	0.430584	2.32392	2.05818	0	0.978576	1.6505	0.858138	1.20491	2.39832	1.38229	2.43358	0.700928	0.635562	0.425922	2.1654	1.17978	2.31956	0	1.02005	6.30881	7.72263	0.574206	2.30758	0	0.277658	3.14565	4.27241	2.37953	2.92996
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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