TCONS_00047560 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047560
Unique NameTCONS_00047560
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047560 ID=TCONS_00047560|Name=TCONS_00047560|organism=Clytia hemisphaerica|type=transcript|length=328bp
gttttaggTTGTATTAACTACAATACATTAattatatgtaaaaaaatgaa
gcGAATTAAACAATACTTAATGCTGAAACACCCATTCATAAAATCAGAGC
AAGAAGATTCTGACGTCAGGATTAATGTCAAAAATGTTACACTACACCTA
CATCGGTTTGTATTGGAACAAAATTCACCAACATTCAGTCGAATGTTCAA
GGATAATGATGTGGAGATTAGCCCAAGAGAAGAATTCTCAATCACAGATC
ACAACATAGATGATGTCATCCAGTATTTCATGTTTTTCTATCCTGAGCTT
AGACAACAAATCACCGGTATGTTTTGGA
Run BLAST on NCBI

protein sequence of TCONS_00047560-protein

>TCONS_00047560-protein ID=TCONS_00047560-protein|Name=TCONS_00047560-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
VLGCINYNTLIICKKMKRIKQYLMLKHPFIKSEQEDSDVRINVKNVTLHL
HRFVLEQNSPTFSRMFKDNDVEISPREEFSITDHNIDDVIQYFMFFYPEL
RQQITGMFW
Run BLAST on NCBI

transcript from alignment at scaffold_131:112606..112933

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047560 ID=TCONS_00047560|Name=TCONS_00047560|organism=Clytia hemisphaerica|type=transcript|length=328bp|location=Sequence derived from alignment at scaffold_131:112606..112933 (Clytia hemisphaerica)
TCCAAAACATACCGGTGATTTGTTGTCTAAGCTCAGGATAGAAAAACATG
AAATACTGGATGACATCATCTATGTTGTGATCTGTGATTGAGAATTCTTC
TCTTGGGCTAATCTCCACATCATTATCCTTGAACATTCGACTGAATGTTG
GTGAATTTTGTTCCAATACAAACCGATGTAGGTGTAGTGTAACATTTTTG
ACATTAATCCTGACGTCAGAATCTTCTTGCTCTGATTTTATGAATGGGTG
TTTCAGCATTAAGTATTGTTTAATTCgcttcatttttttacatataatTA
ATGTATTGTAGTTAATACAAcctaaaac

Coding sequence (CDS) from alignment at scaffold_131:112606..112933

>TCONS_00047560 ID=TCONS_00047560|Name=TCONS_00047560|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at scaffold_131:112606..112933 (Clytia hemisphaerica)
CCAAAACATACCGGTGATTTGTTGTCTAAGCTCAGGATAGAAAAACATGA
AATACTGGATGACATCATCTATGTTGTGATCTGTGATTGAGAATTCTTCT
CTTGGGCTAATCTCCACATCATTATCCTTGAACATTCGACTGAATGTTGG
TGAATTTTGTTCCAATACAAACCGATGTAGGTGTAGTGTAACATTTTTGA
CATTAATCCTGACGTCAGAATCTTCTTGCTCTGATTTTATGAATGGGTGT
TTCAGCATTAAGTATTGTTTAATTCgcttcatttttttacatataatTAA
TGTATTGTAGTTAATACAAcctaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030293XLOC_030293Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047560-exon-scaffold_131-1491911889:112606..112933TCONS_00047560-exon-scaffold_131-1491911889:112606..112933Clytia hemisphaericaexon
TCONS_00047560-exon-scaffold_131-1510915933:112606..112933TCONS_00047560-exon-scaffold_131-1510915933:112606..112933Clytia hemisphaericaexon
TCONS_00047560-exon-scaffold_131-1575043694:112606..112933TCONS_00047560-exon-scaffold_131-1575043694:112606..112933Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047560-proteinTCONS_00047560-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_131supercontigscaffold_131:112606..112933 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.29812	0	0	0.330237	0.804063	1.27076	0	0	0.25122	0.311177	0	0.794185	2.37924	0.823623	6.7713	9.26496	4.92355	2.75262	6.97198	3.31622	2.59415	3.37423	3.41819	3.72915	2.8807	3.71361	0.408782	0	4.30157	3.03412
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000210BTB/POZ_dom
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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