TCONS_00047563 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047563
Unique NameTCONS_00047563
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length710

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047563 ID=TCONS_00047563|Name=TCONS_00047563|organism=Clytia hemisphaerica|type=transcript|length=710bp
agaaaacggagacctgttgtatatttttggaaagctctcaaaaaattaag
attagagattattgtaagtataggtgatttctgtacctaactcgagatat
taacccttgaaaccgtgtttttcagccagaaacagctattttgtccagtt
tttgcgctttttgaagctcaatatctcgagtcattcaaaatcattcattt
ctattcaattttacttttatcTTGAGCAGCTTTCTTAATAatcttgtttc
aatttttaagatactgaaaaatgtcaaaaaataaaatcaacaattACACG
GGACCTAAAAGACTTTCTTACGAATTCAAATTGATGTCATCTTCTGAAGA
ATCCGAGGAGTTTGATTTTGAGGCCTTCAATTCTGGTCAACCTCCAAAGA
GAACAAAGAAACAAACTAAACCAAATTTGAAGCGTTCCAAGAGGGAAGGC
ATGTGCATGCTATCTGGAGATGAGAGCAAATCTGAATCTTCCCAAACAga
acaatttcaagaaaaactgaGAGTTGAAAGTCCTAAAAAAAGCAATATTA
AAAAGAAAGAGGAAAGCAAAAACTTGATCAGTATCAAAGATGATAAAATA
ATAGAcacatttatcaaaaatttcaaggCATGATATGATGAGAATTCTTT
GTCGAGTTTGTCTATATGCCTTTGCATTTGAGAAATTTGGGTTTGTATTG
TATTGATACC
Run BLAST on NCBI

protein sequence of TCONS_00047563-protein

>TCONS_00047563-protein ID=TCONS_00047563-protein|Name=TCONS_00047563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MSKNKINNYTGPKRLSYEFKLMSSSEESEEFDFEAFNSGQPPKRTKKQTK
PNLKRSKREGMCMLSGDESKSESSQTEQFQEKLRVESPKKSNIKKKEESK
NLISIKDDKIIDTFIKNFKA
Run BLAST on NCBI

transcript from alignment at scaffold_131:223029..223738

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047563 ID=TCONS_00047563|Name=TCONS_00047563|organism=Clytia hemisphaerica|type=transcript|length=710bp|location=Sequence derived from alignment at scaffold_131:223029..223738 (Clytia hemisphaerica)
GGTATCAATACAATACAAACCCAAATTTCTCAAATGCAAAGGCATATAGA
CAAACTCGACAAAGAATTCTCATCATATCATGccttgaaatttttgataa
atgtgTCTATTATTTTATCATCTTTGATACTGATCAAGTTTTTGCTTTCC
TCTTTCTTTTTAATATTGCTTTTTTTAGGACTTTCAACTCtcagtttttc
ttgaaattgttcTGTTTGGGAAGATTCAGATTTGCTCTCATCTCCAGATA
GCATGCACATGCCTTCCCTCTTGGAACGCTTCAAATTTGGTTTAGTTTGT
TTCTTTGTTCTCTTTGGAGGTTGACCAGAATTGAAGGCCTCAAAATCAAA
CTCCTCGGATTCTTCAGAAGATGACATCAATTTGAATTCGTAAGAAAGTC
TTTTAGGTCCCGTGTaattgttgattttattttttgacatttttcagtat
cttaaaaattgaaacaagatTATTAAGAAAGCTGCTCAAgataaaagtaa
aattgaatagaaatgaatgattttgaatgactcgagatattgagcttcaa
aaagcgcaaaaactggacaaaatagctgtttctggctgaaaaacacggtt
tcaagggttaatatctcgagttaggtacagaaatcacctatacttacaat
aatctctaatcttaattttttgagagctttccaaaaatatacaacaggtc
tccgttttct

Coding sequence (CDS) from alignment at scaffold_131:223029..223738

>TCONS_00047563 ID=TCONS_00047563|Name=TCONS_00047563|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_131:223029..223738 (Clytia hemisphaerica)
TCATGccttgaaatttttgataaatgtgTCTATTATTTTATCATCTTTGA
TACTGATCAAGTTTTTGCTTTCCTCTTTCTTTTTAATATTGCTTTTTTTA
GGACTTTCAACTCtcagtttttcttgaaattgttcTGTTTGGGAAGATTC
AGATTTGCTCTCATCTCCAGATAGCATGCACATGCCTTCCCTCTTGGAAC
GCTTCAAATTTGGTTTAGTTTGTTTCTTTGTTCTCTTTGGAGGTTGACCA
GAATTGAAGGCCTCAAAATCAAACTCCTCGGATTCTTCAGAAGATGACAT
CAATTTGAATTCGTAAGAAAGTCTTTTAGGTCCCGTGTaattgttgattt
tattttttgacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030296XLOC_030296Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047563-proteinTCONS_00047563-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047563-exon-scaffold_131-1491911889:223029..223738TCONS_00047563-exon-scaffold_131-1491911889:223029..223738Clytia hemisphaericaexon
TCONS_00047563-exon-scaffold_131-1510915933:223029..223738TCONS_00047563-exon-scaffold_131-1510915933:223029..223738Clytia hemisphaericaexon
TCONS_00047563-exon-scaffold_131-1575043694:223029..223738TCONS_00047563-exon-scaffold_131-1575043694:223029..223738Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_131supercontigscaffold_131:223029..223738 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.33804	1.41257	0.813375	1.01088	2.65106	2.00545	0.923822	1.82386	0.722049	1.1875	0.663762	1.01781	0.702703	0.932141	0.511281	0.183988	0.911921	0.555237	0.954186	0.608389	1.04098	1.24913	2.32334	1.41865	2.05715	2.0555	1.16482	0.88843	0.833393	0.368769
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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