TCONS_00047573 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047573
Unique NameTCONS_00047573
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047573 ID=TCONS_00047573|Name=TCONS_00047573|organism=Clytia hemisphaerica|type=transcript|length=346bp
AAACAATTTCTATGCGATATTGATGTTACATTTAAGGAATTTCAATTCCT
ACGAGGACTGGTTCGCATCTAAACAAGACCACGATGAGAAGATTGTGCTT
CATTGAGCTCGGGaaaaaagaacaacaacaaGGTGGCGTAAGACAATGGG
CAGAGGACAAGCTGTTGTACCATACGTGTCGCTGCAAAATATGTATCAAA
TTGAAGGGTGAAGACGAAATCATCGACAGCAACAGCGACGGGGCGTGTAC
AATCTGTTTTACCAGAAAGGCGAATACCAGATTTGATGGGTGTGGGTGTC
TCGGTTGTTGTATCAAATGTGCTGAATCGTTGGAATTCAATAGATG
Run BLAST on NCBI

transcript from alignment at scaffold_132:320872..321490+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047573 ID=TCONS_00047573|Name=TCONS_00047573|organism=Clytia hemisphaerica|type=transcript|length=619bp|location=Sequence derived from alignment at scaffold_132:320872..321490+ (Clytia hemisphaerica)
AAACAATTTCTATGCGATATTGATGTTACATTTAAGGAATTTCAATTCCT
ACGAGGACTGGTTCGCATCTAAACAAGACCACGATGAGAAGATTGTGCTT
CATTGAGCTCGGGaaaaaagaacaacaacaaGGTGGCGTAAGACAATGGG
CAGAGGACAAGCTGTTGTACCATACGTGTCGCTGCAAAATATGTATCAAG
TAAGATTTCTTTTGAGGAGCTATCAGAAATTTTTCTTCCTATAAActaca
agaaaaaaaatattgtttgattgttttttaatcatcattgttattcaaaa
ttttattaaatgcAACTATTTTTTTTACTCGTTTAATTAATACTAGTCTG
GGAAAGGTAAAGTGTAATAGATCCAATCTGATGaaattttattcttttga
ttttcttttcaaaaatagatgatatacagcaaaaaaaaaaaacaatttaa
attcTTCTTGCTATATTTTCAGATTGAAGGGTGAAGACGAAATCATCGAC
AGCAACAGCGACGGGGCGTGTACAATCTGTTTTACCAGAAAGGCGAATAC
CAGATTTGATGGGTGTGGGTGTCTCGGTTGTTGTATCAAATGTGCTGAAT
CGTTGGAATTCAATAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030304XLOC_030304Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047573-exon-scaffold_132-1491911889:320872..321070TCONS_00047573-exon-scaffold_132-1491911889:320872..321070Clytia hemisphaericaexon
TCONS_00047573-exon-scaffold_132-1510915933:320872..321070TCONS_00047573-exon-scaffold_132-1510915933:320872..321070Clytia hemisphaericaexon
TCONS_00047573-exon-scaffold_132-1575043694:320872..321070TCONS_00047573-exon-scaffold_132-1575043694:320872..321070Clytia hemisphaericaexon
TCONS_00047573-exon-scaffold_132-1491911889:321344..321490TCONS_00047573-exon-scaffold_132-1491911889:321344..321490Clytia hemisphaericaexon
TCONS_00047573-exon-scaffold_132-1510915933:321344..321490TCONS_00047573-exon-scaffold_132-1510915933:321344..321490Clytia hemisphaericaexon
TCONS_00047573-exon-scaffold_132-1575043694:321344..321490TCONS_00047573-exon-scaffold_132-1575043694:321344..321490Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_132supercontigscaffold_132:320872..321490 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.332935	0.62338	0.436443	0.810907	0	0	0	0.178859	0	0	0.194401	0	0.550562	0	0	0	0	0.269943	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047573 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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