|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047575 ID=TCONS_00047575|Name=TCONS_00047575|organism=Clytia hemisphaerica|type=transcript|length=1365bp
ggggacgtctatttgGGACCTTAGAGTATTAATTCATAACCCAATgtaat
ttcaagataaaaaaagGAGCTCtgaaattaaaactcgattaAATTGTATA
TAACACAATGAATGTAAGGATTAGTACATTGGAATCTCCATAGCTCGAAC
CTCCCCTCAAATGTCCTCGTAACTGGTCCCTAAGTTGacgagatgccttg
gagtttttacaagatacctcactaattggtcatttaaagtgatagagatg
atgcgttctttagaaaaagtaataagattcttttattacatcttaacgac
caaccaaatcaaataagagcttgtaaaaactctagCTTGTCCCAAGTTGA
CAATACCTTAAAActagtctctataactcgaatccTCAATGGGCTCTAGG
AGGATATATCGGATATTTTGTCCAGGGGctaccccctggaaaatctgcaa
aatttgccttgttttgggTACGAATTTGctctgtttaggggtaattttga
atgtctggAAGGGGGGGggactgatgcttgtccgggggtaagaTCTGTTG
TCTGGGGGTCAGAATTCAATGTGTCCGGggataaatttctaaaaaatgtt
atatcctccacccccccccatgttcaatttttttttctggaaaagggCAA
TAACTTAAAACAAATTCGCGCTCCCCCTtgcatgttcgagttatggatac
TCTACTGTATATATTTTATGCAAGGTAAATACTATCTAAATCTCCAAGCT
TTTAAAAACACAATGTAAATGATGGGAACCAAAAATATAATCGGTTTTCC
TGGCATCAGTATATTTTATAGAATTCGAgtgttttcagtacatgatttct
ttacgattttttcaaCGTCTTTCTTGAAGGGAAGTCTGCAAAAACTTGTA
AAATTTCCCCCCTGGAAATTTAATAGAAAATTTGCAGCATGTAACAAATG
GACAGAATCCTATGAAATAACCCTAATAGTCAAAACGGCCAAcgagtttt
ttgtttttgacctATAATAGATGCTTTTCGTTGAGCCGATGTATACCAGA
TCTTCAACCTCGttccgtgtattccaggctttatcaGATCTTTAACAGAT
CTTCCATATTGGGTTTATGTTTAAAACTAAATCTTAACGTCTGTGAAAGC
TAAATAATCCAAATAATGCGTATGATATGTGATGCATGTAATATGAATTC
CAAAAATGGGTACTTGAAAAGATTCTTCAAGATTGTTCCAATCAAAATTC
AAGCTATCAAACATACTAACCAACTGAACAATATTTTCGAGATCTCTGAA
GCGCATTATGAAATCGACGCGACGGAACTATCATATTTCTTCAAGGCTTG
gatcgaaaaataaaa Run BLAST on NCBI transcript from alignment at scaffold_132:83480..85515- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047575 ID=TCONS_00047575|Name=TCONS_00047575|organism=Clytia hemisphaerica|type=transcript|length=2036bp|location=Sequence derived from alignment at scaffold_132:83480..85515- (Clytia hemisphaerica)
GGGGACGTCTATTTGGGACCTTAGAGTATTAATTCATAACCCAATGTAAT
TTCAAGATAAAAAAAGGAGCTCTGAAATTAAAACTCGATTAAATTGTATA
TAACACAATGAATGTAAGGATTAGTACATTGGAATCTCCATAGCTCGAAC
CTCCCCTCAAATGTCCTCGTAACTGGTCCCTAAGTTGACGAGATGCCTTG
GAGTTTTTACAAGATACCTCACTAATTGGTCATTTAAAGTGATAGAGATG
ATGCGTTCTTTAGAAAAAGTAATAAGATTCTTTTATTACATCTTAACGAC
CAACCAAATCAAATAAGAGCTTGTAAAAACTCTAGCTTGTCCCAAGTTGA
CAATACCTTAAAACTAGTCTCTATAACTCGAATCCTCAATGGGCTCTAGG
AGGATATATCGGATATTTTGTCCAGGGGCTACCCCCTGGAAAATCTGCAA
AATTTGCCTTGTTTTGGGTACGAATTTGCTCTGTTTAGGGGTAATTTTGA
ATGTCTGGAAGGGGGGGGGACTGATGCTTGTCCGGGGGTAAGATCTGTTG
TCTGGGGGTCAGAATTCAATGTGTCCGGGGATAAATTTCTAAAAAATGTT
ATATCCTCCACCCCCCCCCATGTTCAATTTTTTTTTCTGGAAAAGGGCAA
TAACTTAAAACAAATTCGCGCTCCCCCTTGCATGTTCGAGTTATGGATAC
TCTACTGTATATATTTTATGCAAGGTAAATACTATCTAAATCTCCAAGCT
TTTAAAAACACAATGTAAATGATGGGAACCAAAAATATAATCGGTTTTCC
TGGCATCAGTATATTTTATAGAATTCGAGTGTTTTCAGTACATGATTTCT
TTACGATTTTTTCAACGTCTTTCTTGAAGGGAAGTCTGCAAAAACTTGTA
AAATTTCCCCCCTGGAAATTTAATAGAAAATTTGCAGCATGTAACAAATG
GACAGAATCCTATGAAATAACCCTAATAGTCAAAACGGCCAACGAGTTTT
TTGTTTTTGACCTATAATAGATGCTTTTCGTTGAGCCGATGTATACCAGA
TCTTCAACCTCGTTCCGTGTATTCCAGGCTTTATCAGATCTTTAACAGAT
CTTCCATATTGGGTTTATGTTTAAAACTAAATCTTAACGTCTGTGAAAGC
TAAATAATCCAAATAATGCGTATGATATGTGATGCATGTAATATGAATTC
CAAAAATGGGTACTTGAAAAGATTCTTCAAGATTGTTCCAATCAAAATTC
AAGCTATCAAACATACTAACCAACTGAACAATATTTTTCAGATCTCTGAA
GCGTATTATAAAATCGACGCGACGGAACTATCATATTTCTTCAAGGCTTG
GATCGAAAAATGAAAAGAGTATATACAGGCCACGCGATTTTTTGAATATT
AGACGGCGATATTTAATTTCCACCAGATCTTCAATGATTGATTGTGACGG
TAATTCCTCCAGTTTACCTCTATTAAACAACTATTCATGATATGCACCAC
TGCAATGACTTAAGGAAATTATGCAATTTTTCTATTTTTGTTCCACCCAA
TACGTCACTTAAACAATAGAAAAAGTTTTAAAAGTTCTCAGAAGACTCTC
AAGTGGTGCATATCATGAATAGTTACAAATGTCGGGCTCATTGTCATAGA
TACGGCGGCTATTTCTCCAGTTTGCTTCCATTAAACAACTATATTGACAA
AAGTCGGGCTCACAGATACGACGTCGGTTTTCCATCTTNTGTATTCCAGG
CTTTATCAGATCTTTAACAGATCTTCCATATTGGGTTTATGTTTAAAACA
AAATCTTAACGTCTGTGAAAGCTAAATAATCCAAATAATGCGTATGATGT
GTGGTGCATGTAATATGAATCCAAAAATGGGTACTTGAAAAGATTCTTCA
AGATTCTTCCAATCAAAATTCAAGCCATCAAACATACTAACCAACTGAAC
AATATTTTCGAGATCTCTGAAGCGCATTATGAAATCGACGCGACGGAACT
ATCATATTTCTTCAAGGCTTGGATCGAAAAATAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047575-exon-scaffold_132-1575043694:84254..85515 | TCONS_00047575-exon-scaffold_132-1575043694:84254..85515 | Clytia hemisphaerica | exon |
| TCONS_00047575-exon-scaffold_132-1575043694:83480..83582 | TCONS_00047575-exon-scaffold_132-1575043694:83480..83582 | Clytia hemisphaerica | exon |
| TCONS_00047575-exon-scaffold_132-1510915933:84254..85515 | TCONS_00047575-exon-scaffold_132-1510915933:84254..85515 | Clytia hemisphaerica | exon |
| TCONS_00047575-exon-scaffold_132-1510915933:83480..83582 | TCONS_00047575-exon-scaffold_132-1510915933:83480..83582 | Clytia hemisphaerica | exon |
| TCONS_00047575-exon-scaffold_132-1491911889:84254..85515 | TCONS_00047575-exon-scaffold_132-1491911889:84254..85515 | Clytia hemisphaerica | exon |
| TCONS_00047575-exon-scaffold_132-1491911889:83480..83582 | TCONS_00047575-exon-scaffold_132-1491911889:83480..83582 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_132 | supercontig | scaffold_132:83480..85515 - |
Blast
The following BLAST results are available for this feature:
|
