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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047580 ID=TCONS_00047580|Name=TCONS_00047580|organism=Clytia hemisphaerica|type=transcript|length=2538bp TTAGGGTTAAGACTTGTTAAGGCttgtaaacattttttgttgtttttgta tgtTCAGTATATTTCATCATCGTTGGAGAAAATTCACATTAAAGTTATCT GAGCTCAAATTGTCGTGTTCCAATGTGGATGCAGGTTCAGAGTAATCTCA CCGGAGATGTTTTCGACCAGTGTTTCTAcgcttttatttttaatttttta taaattacttTATTTTAGTCAAGCTTAGACTACTTATTTACACTACAATC CAGTGTATTTTCCTCTAAGTAACCAAATCTGTCTGTCTGCCTGTCTGTCT GTCTTGTCTTTTTTCAAGTACTTActcaaaaattgatttgtttaaaacac ccctgtctcacagccccggtggaacttttttcttcagtgggaataaaaat caacaatgattgattttcaagtggggttgaaattccagggtattttcgca ccggggaccaaatttttgccaaatgtcccaatgggtctgtgacacagggg tgttttaaagtTGCAGCGTTCAAAAGAGTCTCTTAAGTATGTGCTCATCA GTTATCAGTAACTTGAGAACTTTTCGCTTTAAATTCCTTTTTATTGATAT CATTTTTTTGTTAACTAAGATAGAAACCCCAGGAGGGGGTGTCACTTAGG CAGAATTGGGTACGGCGACGTGCCgttggtcagggtcccttttttagact tttttagaTTAGAAGATAACGGACAGGatcccaaatttactaaatttcaa gatttgaATCCGACAGGGTTGACTTTCGGCTATTTTAGACGATTTTCAGA ATGGAAATTACAGTAAAGCatagatatttttcaaatatcggtgtttgaaa gaaaaagttattgttatcccagctggcacacaacgttgttttaacgttct tctaacgttatatggacgttgtgaacgttgtatggacgttgaaataacgt tgtgttcCGGCTGGGATATTAGTGATCGAAAGAAAAGGTATATTGGTATC TCAAAGCAACATAAGCCCACACACAATCATctataaacctttttttttca ggGAAGGTCTACCTGCTTCGGGACCCACTGTCCATAGAAGGGGTCGTACG ACATGTGGTGATAAAATATGGATTTTAGTAAATTTGTTGTTGGAGATGCA AGAAAAATGCGTCGACCTCTTAAACATACTTTCTATAAAGATAAGAAAAC ATTCtaaagaaacattttttcgcTAGAGAATGAGCAGAAGCCTCGTACTT CGGTGCTCTCAAGCCCATACataaattttgtcaaattttcctcGAAATCT GAGGAGGGGCTTAACTCGTATTTTATTAAGCCCTCATCACATTATATCAA GTACTATCAAGTATCATGATAATGTACATTCTTAAAAAGAGATTATTTAC TTTCAATTTGACAGCTTGAtgtcaaagatttgttcatATTTCCTTTCTCT ACTAAGCTAAGACCATATGAATCATTATTCTGGTTAGGTTTTGTTTCAAA GTACATCAAAAAGAGCTTATCGTAAAACGACTTCAATGTAGAATTTGAAA AACATAAGAACAGTACAAACGCaacttcaattttcaatttgttcGTATAT CGTATTTATTGGTTTACCATCAATGGATGTACTTAAATTAGTGGTGCTTT ACTTTACTTTAGCAAGAATTGCCGATTCCAATGAACAAAATAAGGATCCT TGTCCAGAAGAAACATTGAACCTGGTTCGATATCCACGACTACCCTATGA AGGAGATCAACTCGAAGGATTCTGCATCAAGAATGCTGTTAATCACGTCC CTGGTTCTAcactaaaaataatttgtggTACAAAAGGAAATTTCACTGTG CAAGGAGCATGTGTTTGCAAACCTGGATATTTTTTGAATGGTTACAAATG CCAAGCATGTCAAGATGGTTACATGAAATCGGAACCTGGGAATGGCAAAT GTCTTCATCCAGGGCGAAACACGATCCCGTGCACATCAACAACTCCAGTA TGTCCTTGTAAAGAGAAGTTCTTTCGAGTTCTGGAAGAGAAATCATCTCC CGGGACGCATTGTTATCAGGCAGGAAGAATCAATAAGCTACGGTACTCAA ACTTCACTGACGGTTCAGTACGGTTGACTTGGGATGTGCCTTATTACAGG ACCGGCTATCGACCTACATTTCTAATAACTATTGACGGAAAAGCGAGTAC ACAGAAGGTGACGCGTTTGAACTTTCCGAAATCCAACTACACAAGACACT ACAAAATACAGgtgGTAACTCAAGTCAAGGTTGGCGAGAAGATATACCAA GGAGATGGATACACCAAAACAATCACTGTTTATAAAGAGAGAGTCAGTGG TGCTTGGatttgaaaaatagaatttcatcCATCATGGGGCAGGGGTGTTT TATTCGTCATTTAAAGCTGGCAACCGTCTTTCCCTGAAGAATCTCATATC ATCTCTATAATAACACCCCTGAATCTTGatataaacatttttcaaattac ttGGAGCTGGACGGCACATTTAAAGCGAGCAAAACgag Run BLAST on NCBI transcript from alignment at scaffold_132:117063..123957- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047580 ID=TCONS_00047580|Name=TCONS_00047580|organism=Clytia hemisphaerica|type=transcript|length=6895bp|location=Sequence derived from alignment at scaffold_132:117063..123957- (Clytia hemisphaerica) TTAGGGTTAAGACTTGTTAAGGCTTGTAAACATTTTTTGTTGTTTTTGTA
TGTTCAGTATATTTCATCATCGTTGGAGAAAATTCACATTAAAGTTATCT
GAGCTCAAATTGTCGTGTTCCAATGTGGATGCAGGTTCAGAGTAATCTCA
CCGGAGATGTTTTCGACCAGTGTTTCTACGCTTTTATTTTTAATTTTTTA
TAAATTACTTTATTTTAGTCAAGCTTAGACTACTTATTTACACTACAATC
CAGTGTATTTTCCTCTAAGTAACCAAATCTGTCTGTCTGCCTGTCTGTCT
GTCTTGTCTTTTTTCAAGTACTTACTCAAAAATTGATTTGTTTAAAACAC
CCCTGTCTCACAGCCCCGGTGGAACTTTTTTCTTCAGTGGGAATAAAAAT
CAACAATGATTGATTTTCAAGTGGGGTTGAAATTCCAGGGTATTTTCGCA
CCGGGGACCAAATTTTTGCCAAATGTCCCAATGGGTCTGTGACACAGGGG
TGTTTTAAAGTTGCAGCGTTCAAAAGAGTCTCTTAAGTATGTGCTCATCA
GTTATCAGTAACTTGAGAACTTTTCGCTTTAAATTCCTTTTTATTGATAT
CATTTTTTTGTTAACTAAGATAGAAACCCCAGGAGGGGGTGTCACTTAGG
CAGAATTGGGTACGGCGACGTGCCGTTGGTCAGGGTCCCTTTTTTAGACT
TTTTTAGATTAGAAGATAACGGACAGGATCCCAAATTTACTAAATTTCAA
GATTTGAATCCGACAGGGTTGACTTTCGGCTATTTTAGACGATTTTCAGA
ATGGAAATTACAGTAAAGCATAGATATTTTTCAAATATCGGTGTTTGAAA
GAAAAAGTTATTGTTATCCCAGCTGGCACACAACGTTGTTTTAACGTTCT
TCTAACGTTATATGGACGTTGTGAACGTTGTATGGACGTTGAAATAACGT
TGTGTTCCGGCTGGGATATTAGTGATCGAAAGAAAAGGTATATTGGTATC
TCAAAGCAACATAAGCCCACACACAATCATCTATAAACCTTTTTTTTTCA
GGGAAGGTCTACCTGCTTCGGGACCCACTGTCCATAGAAGGGGTCGTACG
ACATGTGGTGATAAAATATGGATTTTAGTAAATTTGTTGTTGGAGATGCA
AGAAAAATGCGTCGACCTCTTAAACATACTTTCTATAAAGATAAGAAAAC
ATTCTAAAGAAACATTTTTTCGCTAGAGAATGAGCAGAAGCCTCGTACTT
CGGTGCTCTCAAGCCCATACATAAATTTTGTCAAATTTTCCTCGAAATCT
GAGGAGGGGCTTAACTCGTATTTTATTAAGCCCTCATCACATTATATCAA
GTACTATCAAGTATCATGATAATGTACATTCTTAAAAAGAGATTATTTAC
TTTCAATTTGACAGCTTGATGTCAAAGATTTGTTCATATTTCCTTTCTCT
ACTAAGCTAAGACCATATGAATCATTATTCTGGTTAGGTTTTGTTTCAAA
GTACATCAAAAAGAGCTTATCGTAAAACGACTTCAATGTAGAATTTGAAA
AACATAAGAACAGTACAAACGCAACTTCAATTTTCAATTTGTTCGTATAT
CGTATTTATTGGTTTACCATCAATGGATGTACTTAAATTAGTGGTGCTTT
ACTTTACTTTAGCAAGAATTGCCGATTCCAATGAACAAAATAAGGTGAGT
GTGAGCTTTGTAATATACCTAAAACCCAAATTCGAACTCAGCCCCTTCAC
TTTTTTATATTTTCTGATAGCGCATCAACAGCGTAGACAAGGGGGGCACA
AAATTTGCACAGGAGAGCAGATTTTAATAACACTGTAATTATCTATCCAT
AATATATAAAAAGATAATTACTGTGTGCATAAAAATTTGCTCTCCTACAC
AAATTTGTGCCCCTCTTGGCTACGCTACTGCGCTCACGAATGTACCAATG
TCAATCAATTAATCAAAAAGTGATGGAAGTTGCTCTGGGTACGACATTGC
TGATATATAAACTTAATCCAAGCAATGTGTCAAAGAAAAAGCTTCACTAA
GAAATTGACTTATTCGAAATATTAGCCCATGTTATTATTCTTTTCCGATG
AAAAAATTAAAAGTAATTTTTTTGTTGTTGGAAAGAAGCACTTTCCTTGA
TAATCAGAACTAAACATTTGAAGAGCTATAGCTAATATAATTCTAAATTC
CCAAACCGCAATTTTTAAAGTCTCTTTTTTTTAATCTGTACAAACCTAAG
AACGCCCAAAATTTTGAGCCTTCGGATGTTTTTGAGATTTAAGCCTTATC
AATTATGTTCTTAAAATGTTCTTACTTTCACCATATCGTGAGTATTTCTT
TGCAATGTTCCTAAGAAATATTGTGTTTTTAGAGTCTCTATGTTCTCAAC
ATTCTTGTCATTGAAGCCTTATGTTCATACATAGTTTCTTATCATATAAA
AATATCATTCAACTAAATTTCTTATTCAACAATAGCAGGATCAATGTCCG
GTGACCAGACGTTTCCCCGATGGACGTTTCCCCGAGGGACTTTTCCCCGA
CGGACTTTTCCCCGAAAGACATTTCTTTATCTTTACAAATCTAGCCGAAA
AAAACAGTCTAATGAACAAGGGATGCTCATAGGTAAACATACTATGTAGA
TTTCTCATTTTAACAATAGGATCCTTGTCCAGAAGAAACATTGAACCTGG
TTCGATATCCACGACTACCCTATGAAGGAGATCAACTCGAAGGATTCTGC
ATCAAGAATGCTGTTAATCACGTCCCTGGTTCTACACTAAAAATAATTTG
TGGTACAAAAGGAAATTTCACTGTGCAAGGAGCATGTGTTTGCAAACCTG
GATATTTTTTGAATGGTTACAAATGCCAAGGTGATTTTAAGTTATTTTGC
TAACTCGAGCCAAGTTCCTTTATTTTGCTTTTTTATTCTGATAGCGATTG
TATCACGTGCATTAGTAAAATTAAGTTCACTACAGTAAGTGGCTCCGGGT
TTGAATTTGGAATTTTGCTTTGAACTGGAGGACACTAGTACTAAGACCAT
AAAAGCATTTTTAGGCAAAATTGAGGGCTGGAAAACCCAAGCTATGACGT
CCTAACTCGGGTTTTTCATAACTCGGGTTTTCATTACTCGGTTTTTTTAA
CTCGGATTTTCCAGGTTAAATATATTGAGTTAAGAAATATCAAATATAAA
AAAGCATTTGCATAGGGAAATGACTAGATGGAAAAATCTAAGTTTTCACT
ATTCTAAATCTGGATTGAGGTCTGCTTTTAATGTTAAAACAACCCCCTGA
CAAACCATATCTTTGCTACCATTTTGCGCTATTAACGACTGTGACAAACG
AAAAATTGTAATTGATAACACTTAACGGCTAACCAGGCTACCAATAACTA
GTTTAAAGATCCATCGGTCTTACAACTAACTTCATTTGCTTTTAGCATGT
CAAGATGGTTACATGAAATCGGAACCTGGGAATGGCAAATGTCTTCATCC
AGGGCGAAACACGATCCCGTGCACATCAACAACTCCAGTATGTCCTTGTA
AAGAGAAGTTCTTTCGAGTTCTGGAAGAGAAATCATCTCCCGGGACGCAT
TGTTATCGTAAGTTGTTTATTTTAACCCTAGGGTTTAGTGTTTGAACTAA
GCGACCGTGGTACAGTGGTAGAGCATCCTGCTATTGTGCGCAAGGTTGTA
GGTTCATCCCCCAGCCAGGCTATACCAAAGATTCCCAAAATGGTACTTGA
TGCCTCTCTGCTTGATGCCCAGCAATCAAGAGAAGGGTAAGTGGAGCAAT
CCAGGGAAAAAGAGTGGCGCCCTCCCCTGACTTCGGGTAAATAGCTATCA
ACGATAAAAGGAGCCTTCTGGTCGTCTCCGCCCGCGGTCTTTGACTTCCT
CACTAATTACTAGGGCCTAGTTTCAATTTGACTGTCAGCTTGGATCCTAA
TGAATTCAACTTTTGAGGGGTGCTAGGGTTGCAAGTTGAAATGGGGCAAA
AAGTTGAATTTGTTCTATTTACCAACCCTTAGTGGGACTGAGACATTGAT
ATTCTCTTCCTCTATAAAAATATGACATAAGTCGTCTCGGTAAAAAAGCA
TTTCCTTCAGTTTCTATTTTCCGAACAAAAAAATGAAGAAACATACAACG
GAGTCTCCTTAACCAAATGTCTTTTTAATTCGAACAAGTTTTCTAGTCCC
TTCAGTTCAAAATGCCTTATGGATCTTACTCCATAACTCGAAATTTCCAT
AACTGGAACAAATTTGTGTTCTCCCTGGGTGTTCGAGACTTAACTACCTG
GTACCCCTTTAAAATTATCACAGTATACCGAAATAGTGTCTTCTGCTAGT
ATTATTTAAAAGTTTGTTTCTTATATACATAACTTTTATTTAGAGGCAGG
AAGAATCAATAAGCTACGGTACTCAAACTTCACTGACGGTTCAGTACGGT
TGACTTGGGATGTGCCTTATTACAGGACCGGCTATCGACCTACATTTCTA
ATAACTATTGACGGAAAAGCGAGTACACAGAAGGTGACGCGTTTGAACTT
TCCGAAATCCAACTACACAAGACACTACAAAATACAGGTAAGGTTATAGT
TTGAAAATTGCGAGATGTTTAGGTGGAAGGGGTGTATATACTGACTTTAT
GCATGTGTGCTTTTCTGTGACAGGGATGGTAATGTTCTAATTTGTCTAGA
TCCTGACTGACTGAGGAGGACGGTAACTCATTATTGGCGGTGTGACGGTA
TGAGTCCGTTCTTCTGTCCGTGTTTGAAGAAAAAACTAACGGTATGCAGT
GACAAAACACAGTAGCCCCTGTACCCCTGTACGCCCAAACTAGAATTTTT
TTTAAGAAAGCAGCTCTAAATGATTCCATAAAAGTGTCTGTCTGAAATTT
TAGGGAGACATTTCTAACAATGATTTTAGCCCATCAGCTACGACCCTAAA
ATTTAACATTTTGGCTCCGGAAAAGGGAGTAATTCGAAAAATGGTTTTTT
GGTATCCTTAGTTAAGGAATTAGTCAGTTGAACTGGTCAAATAGGTAGCT
TAATATGATTTTCAAGGCTTAATGTTGGGTTCGTTGGTCAAAAAAGTTGT
AAAATTTTAATGTTTTCTGGGGGTCGAGAAAACTTGTTCAGGCCAGTCAA
CCGGACAATTCCATAACTAGGATGCCTTAGGGTACCTAAAAATCACCTTA
GGCTTACTCCCTCTTCAGAGCCCAAAATTTGTCTAGCTGACCGATTATTT
CATTTTTCCAGGTGGTAACTCAAGTCAAGGTTGGCGAGAAGATATACCAA
GGAGATGGATACACCAAAACAATCACTGTTTATAAAGAGAGAGTCAGTGG
TGGTAAGTGTTTATCTAACCCTGNATACCAAGGAGATGGATACACCAAAA
CAATCACTGTTTATAAAGAGAGAGTCAGTGGTGGTAAGTGTTTATCTAAC
CCTGTGTTATATTTTAGAGAGTTTATGTATGTCACGTTTTTCTTTATTTA
TAAGACAATCCTAATTTTTTGAAGCCTTTGGATTTTCTTAATTCTATGAG
TTTTAAGCCTAAAAATGTTTTTATTTTCACCTTTATGTGAATATTTTTGT
CCATTTTCCTTAAAAATTGAGTGTTATGGAGTCTGCAAAGCCTTAAAATA
TTTATAACTTGTTCTTAATAATTTAGCTATCGAAGCCAAATTAATCCTTA
TTAACCGAGGACGACGGTTAATTAGCACTTTTATAGTCCTCGATTTTGCG
GGTCAAAACACTGCGTGTTATTAAAAATCGCTTCAGTCACCCATGGTCCT
CAAAAGTGTAAATACATAAACTCGCTATTCACTGGAACGTCGAGACCCCC
ATTCCTTATACAAAAAAATTGTCAAAAAAAGCTTTAAGGCTGAACTTTCT
AACGGGAAAAACTGTATGATTTTAAGAGTCCCCAATTATTGAGCTTAAAT
TAGAATATCCCACCTTAAACGACATTTAGCAGTTTAAACGACATTTAGCT
TTCATTGGATCCGTACCAAGACAGCTGTCTGGATCCAGATATTCAACTAA
AAATAAGATCTGTAGCAGTTTTGAAAGTGGAGGATTTTTCACGGTATTAA
ACTATACTTATTTATCTTTTAATTCTCTTTACAGCGATTCTATCGAAGCC
ACCGTTTTATCTGCTCTTGTTCGCAGTTGCATTTATATTCATTATGTGAA
CAAAGCAAGTATTGGTTTTCAGAAGAAGAAATAAAGCGATATAGCCACAA
ACGGAAGTAAAAAAGGACTTGGTATCGCAGTCAGGAATATTTCCAACAGA
GCTTCGATTAAGAATCTCGATAGAGGCTTTAGATAGAGGCTTTGTTAAAA
AACTTTTAATGAATTCCATTGGTTTTTGTGTTTGTGACCCATAATGATGA
AACAAACTGGAAAATAACAGATGTTAATCATTTTTCCAGAATCGCTGGTG
GGAGTGTGCTATACACCATTTAACTGTTAAATTAGTGAAGTCATTCAAAG
CGTACAACCACATCTTGGACTCTGCTGTTGGGTTTTGTTAGCTTACCGGC
GGGTTGCCACACTCTTCTGCAGTCAATTCATCAATTCAAACATTCAAAAG
ATTCCGAAAGTGAAAACTGTCTGATTTTTTCTTAAAATTTATTTTGAATT
CAATAAAAAGAGTTACACTAACAATTTTGTATACGTATCTTTCTACTGAT
TTTTTTTAGCTTGGATTTGAAAAATAGAATTTCATCCATCATGGGGCAGG
GGTGTTTTATTCGTCATTTAAAGCTGGCAACCGTCTTTCCCTGAAGAATC
TCATATCATCTCTATAATAACACCCCTGAATCTTGATATAAACATTTTTC
AAATTACTTGGAGCTGGACGGCACATTTAAAGCGAGCAAAACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00047580-exon-scaffold_132-1575043694:122264..123957 | TCONS_00047580-exon-scaffold_132-1575043694:122264..123957 | Clytia hemisphaerica | exon |
TCONS_00047580-exon-scaffold_132-1575043694:121078..121288 | TCONS_00047580-exon-scaffold_132-1575043694:121078..121288 | Clytia hemisphaerica | exon |
TCONS_00047580-exon-scaffold_132-1575043694:120351..120512 | TCONS_00047580-exon-scaffold_132-1575043694:120351..120512 | Clytia hemisphaerica | exon |
TCONS_00047580-exon-scaffold_132-1575043694:119371..119564 | TCONS_00047580-exon-scaffold_132-1575043694:119371..119564 | Clytia hemisphaerica | exon |
TCONS_00047580-exon-scaffold_132-1575043694:118606..118696 | TCONS_00047580-exon-scaffold_132-1575043694:118606..118696 | Clytia hemisphaerica | exon |
TCONS_00047580-exon-scaffold_132-1575043694:117063..117248 | TCONS_00047580-exon-scaffold_132-1575043694:117063..117248 | Clytia hemisphaerica | exon |
TCONS_00047580-exon-scaffold_132-1510915933:122264..123957 | TCONS_00047580-exon-scaffold_132-1510915933:122264..123957 | Clytia hemisphaerica | exon |
TCONS_00047580-exon-scaffold_132-1510915933:121078..121288 | TCONS_00047580-exon-scaffold_132-1510915933:121078..121288 | Clytia hemisphaerica | exon |
TCONS_00047580-exon-scaffold_132-1510915933:120351..120512 | TCONS_00047580-exon-scaffold_132-1510915933:120351..120512 | Clytia hemisphaerica | exon |
TCONS_00047580-exon-scaffold_132-1510915933:119371..119564 | TCONS_00047580-exon-scaffold_132-1510915933:119371..119564 | Clytia hemisphaerica | exon |
TCONS_00047580-exon-scaffold_132-1510915933:118606..118696 | TCONS_00047580-exon-scaffold_132-1510915933:118606..118696 | Clytia hemisphaerica | exon |
TCONS_00047580-exon-scaffold_132-1510915933:117063..117248 | TCONS_00047580-exon-scaffold_132-1510915933:117063..117248 | Clytia hemisphaerica | exon |
TCONS_00047580-exon-scaffold_132-1491911889:122264..123957 | TCONS_00047580-exon-scaffold_132-1491911889:122264..123957 | Clytia hemisphaerica | exon |
TCONS_00047580-exon-scaffold_132-1491911889:121078..121288 | TCONS_00047580-exon-scaffold_132-1491911889:121078..121288 | Clytia hemisphaerica | exon |
TCONS_00047580-exon-scaffold_132-1491911889:120351..120512 | TCONS_00047580-exon-scaffold_132-1491911889:120351..120512 | Clytia hemisphaerica | exon |
TCONS_00047580-exon-scaffold_132-1491911889:119371..119564 | TCONS_00047580-exon-scaffold_132-1491911889:119371..119564 | Clytia hemisphaerica | exon |
TCONS_00047580-exon-scaffold_132-1491911889:118606..118696 | TCONS_00047580-exon-scaffold_132-1491911889:118606..118696 | Clytia hemisphaerica | exon |
TCONS_00047580-exon-scaffold_132-1491911889:117063..117248 | TCONS_00047580-exon-scaffold_132-1491911889:117063..117248 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_132 | supercontig | scaffold_132:117063..123957 - |
Blast
The following BLAST results are available for this feature:
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