TCONS_00047593 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047593
Unique NameTCONS_00047593
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047593 ID=TCONS_00047593|Name=TCONS_00047593|organism=Clytia hemisphaerica|type=transcript|length=351bp
ACTGAAGGCCCGACTGAAGGCTATGATTTCGATCTACTCGAAAGTGATAT
TGGTCCTGGCTTGACTTGTCCCATATGTACGCTTTTGTTTCGAGATGCTG
TGGAGTTGAGATGTAAACATGCCTTTTGTAAAATCTGTTTGGTCAACTGG
GAAAAAACCTTTCATAATGAgGAATCGTCGTGCTCCATCTGCAAGGCTGT
GTACGTGAAAGGTTCTGCACATCCAGTTGGAGTTTTGGATAGACTGATCA
GAGACACGATCAAAGTTTATTGCCAGCAAAAAGAGGGTGGTTGTGACTGG
GTTGGCATGATCGATGACTACTGCAAGGGTCATGAAAAGGTCTGCCTGTA
T
Run BLAST on NCBI

protein sequence of TCONS_00047593-protein

>TCONS_00047593-protein ID=TCONS_00047593-protein|Name=TCONS_00047593-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
TEGPTEGYDFDLLESDIGPGLTCPICTLLFRDAVELRCKHAFCKICLVNW
EKTFHNEESSCSICKAVYVKGSAHPVGVLDRLIRDTIKVYCQQKEGGCDW
VGMIDDYCKGHEKVCLY
Run BLAST on NCBI

transcript from alignment at scaffold_132:158802..160241-

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047593 ID=TCONS_00047593|Name=TCONS_00047593|organism=Clytia hemisphaerica|type=transcript|length=1440bp|location=Sequence derived from alignment at scaffold_132:158802..160241- (Clytia hemisphaerica)
ACTGAAGGCCCGACTGAAGGCTATGATTTCGATCTACTCGAAAGTGATAT
TGGTCCTGGCTTGACTTGTCCCATATGTACGCTTTTGTTTCGAGATGCTG
TGGAGTTGAGATGTAAACATGCCTTTTGTAAAATCTGTTTGGTCAACTGG
GAAAAAACCTTTCATAATGAGTATGTTTTGCCTCAAAATCGTTTTTGCTA
TAAGATATGCGAATCAGATTCGAAGAAACACCTCCGCTTAGCAAATTTTT
GTGTAAGGTGACACAATGCAATAAATTTTGTCACCGAGCCCCCCCCCCAA
GATGCTTCCCCTAGTAAAACAATAAGATGAATGTTGGAAGGGTTAATATG
CTTAAAAGCCTTTTATTACTGTATTTACTGTATTTAGAATTAGTTAAAAA
CCTTCTTTTGTTTTCAGGGAATCGTCGTGCTCCATCTGCAAGGCTGTGTA
CGTGAAAGGTTCTGTAAGTAACTTAATAGTTTTCAGGGCAAATAATTAAA
ATCTTTCTCTATCCTCAAAGAATTAAAAAAACTCTCTGATTGATAACTAT
ATAATTGAATTTTAAATCTTGAGATTTGTAGAGGTTTCACAGGAAAATTT
TCCCGTTTGCTTTCACACCTCACAGACCCGGTAGGATTTCTTTCAGCCTG
CGGAGATAAAAAATAACGGACTGAAACTCGATGGGGGTTGATATTCCAAT
ATTTTTTATGGCCGGGGATTTCAATTCTTTTGTTTCCAAGTCAGAAAATT
CTGTGGAAATGAGAAAAATAGCACAATATTTTGCAGTGAAGATTGGCTTA
TTTGATTTTTTTCAGTGACAGTGAGAACAAAAATTGGGGTATAATTTACC
ACTGGGGACGATAATCTGGCCAATTTTTCCAGTGGAAAGGGGTCCCAATG
GGTCTGTGAGAAGGGGGTGTATTCTCGCTGTAAGAAGTCAAATATCGGTG
AAAGTTTAAATCTAAAAACCTATCTACTTTCACTTAGGCACATCCAGTTG
GAGTTTTGGATAGACTGATCAGAGACACGATCAAAGTTTATTGCCAGCAA
AAAGAGGGTGGTTGTGACTGGGTTGGCATGATCGATGACTACTGCAAGGT
TTTTGAACGGAAAAACTAATCTTGTTAATTTTTTTTGTGTGTTAATTTCA
AAGCCGTCAAATACTTGCATACTTATTCGAGCAAGTTACTTACGAAATCT
AACCTTTTAGTTTGCATATTTCAGAAAATATGTTTTGAATTCGGTCACAT
TTTAAGTAATAGATTCTTTCAAAGCTAAGTAATCTAACTACCCAGCTGGC
ACACAACGTTGTTTCAACATTCATCTAACGTTATATGGACGCTGTAAACG
TTAGATAAACGTTGAAACAATGTTGTGTGCCAGCAGGGTAAGGCTTCATC
AATTACCACCTTTTAGGGTCATGAAAAGGTCTGCCTGTAT

Coding sequence (CDS) from alignment at scaffold_132:158802..160241-

>TCONS_00047593 ID=TCONS_00047593|Name=TCONS_00047593|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_132:158802..160241- (Clytia hemisphaerica)
GGTCATGAAAAGGTCTGCCTGTATGCACATCCAGTTGGAGTTTTGGATAG
ACTGATCAGAGACACGATCAAAGTTTATTGCCAGCAAAAAGAGGGTGGTT
GTGACTGGGTTGGCATGATCGATGACTACTGCAAGGGAATCGTCGTGCTC
CATCTGCAAGGCTGTGTACGTGAAAGGTTCTACTGAAGGCCCGACTGAAG
GCTATGATTTCGATCTACTCGAAAGTGATATTGGTCCTGGCTTGACTTGT
CCCATATGTACGCTTTTGTTTCGAGATGCTGTGGAGTTGAGATGTAAACA
TGCCTTTTGTAAAATCTGTTTGGTCAACTGGGAAAAAACCTTTCATAATG
AGGTCATGAAAAGGTCTGCCTGTATGCACATCCAGTTGGAGTTTTGGATA
GACTGATCAGAGACACGATCAAAGTTTATTGCCAGCAAAAAGAGGGTGGT
TGTGACTGGGTTGGCATGATCGATGACTACTGCAAGGGAATCGTCGTGCT
CCATCTGCAAGGCTGTGTACGTGAAAGGTTCTACTGAAGGCCCGACTGAA
GGCTATGATTTCGATCTACTCGAAAGTGATATTGGTCCTGGCTTGACTTG
TCCCATATGTACGCTTTTGTTTCGAGATGCTGTGGAGTTGAGATGTAAAC
ATGCCTTTTGTAAAATCTGTTTGGTCAACTGGGAAAAAACCTTTCATAAT
GAGGTCATGAAAAGGTCTGCCTGTATGCACATCCAGTTGGAGTTTTGGAT
AGACTGATCAGAGACACGATCAAAGTTTATTGCCAGCAAAAAGAGGGTGG
TTGTGACTGGGTTGGCATGATCGATGACTACTGCAAGGGAATCGTCGTGC
TCCATCTGCAAGGCTGTGTACGTGAAAGGTTCTACTGAAGGCCCGACTGA
AGGCTATGATTTCGATCTACTCGAAAGTGATATTGGTCCTGGCTTGACTT
GTCCCATATGTACGCTTTTGTTTCGAGATGCTGTGGAGTTGAGATGTAAA
CATGCCTTTTGTAAAATCTGTTTGGTCAACTGGGAAAAAACCTTTCATAA
TGAGGTCATGAAAAGGTCTGCCTGTATGCACATCCAGTTGGAGTTTTGGA
TAGACTGATCAGAGACACGATCAAAGTTTATTGCCAGCAAAAAGAGGGTG
GTTGTGACTGGGTTGGCATGATCGATGACTACTGCAAGGGAATCGTCGTG
CTCCATCTGCAAGGCTGTGTACGTGAAAGGTTCTACTGAAGGCCCGACTG
AAGGCTATGATTTCGATCTACTCGAAAGTGATATTGGTCCTGGCTTGACT
TGTCCCATATGTACGCTTTTGTTTCGAGATGCTGTGGAGTTGAGATGTAA
ACATGCCTTTTGTAAAATCTGTTTGGTCAACTGGGAAAAAACCTTTCATA
ATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030311XLOC_030311Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047593-proteinTCONS_00047593-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047593-exon-scaffold_132-1575043694:160072..160241TCONS_00047593-exon-scaffold_132-1575043694:160072..160241Clytia hemisphaericaexon
TCONS_00047593-exon-scaffold_132-1575043694:159779..159824TCONS_00047593-exon-scaffold_132-1575043694:159779..159824Clytia hemisphaericaexon
TCONS_00047593-exon-scaffold_132-1575043694:159144..159254TCONS_00047593-exon-scaffold_132-1575043694:159144..159254Clytia hemisphaericaexon
TCONS_00047593-exon-scaffold_132-1575043694:158802..158825TCONS_00047593-exon-scaffold_132-1575043694:158802..158825Clytia hemisphaericaexon
TCONS_00047593-exon-scaffold_132-1510915933:160072..160241TCONS_00047593-exon-scaffold_132-1510915933:160072..160241Clytia hemisphaericaexon
TCONS_00047593-exon-scaffold_132-1510915933:159779..159824TCONS_00047593-exon-scaffold_132-1510915933:159779..159824Clytia hemisphaericaexon
TCONS_00047593-exon-scaffold_132-1510915933:159144..159254TCONS_00047593-exon-scaffold_132-1510915933:159144..159254Clytia hemisphaericaexon
TCONS_00047593-exon-scaffold_132-1510915933:158802..158825TCONS_00047593-exon-scaffold_132-1510915933:158802..158825Clytia hemisphaericaexon
TCONS_00047593-exon-scaffold_132-1491911889:160072..160241TCONS_00047593-exon-scaffold_132-1491911889:160072..160241Clytia hemisphaericaexon
TCONS_00047593-exon-scaffold_132-1491911889:159779..159824TCONS_00047593-exon-scaffold_132-1491911889:159779..159824Clytia hemisphaericaexon
TCONS_00047593-exon-scaffold_132-1491911889:159144..159254TCONS_00047593-exon-scaffold_132-1491911889:159144..159254Clytia hemisphaericaexon
TCONS_00047593-exon-scaffold_132-1491911889:158802..158825TCONS_00047593-exon-scaffold_132-1491911889:158802..158825Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_132supercontigscaffold_132:158802..160241 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.532489	0.321213	0	0	0	0	0	5.64953	5.52197	0.709345	0.456742	0.375112	0.192239	5.04618	11.6726	0	0	0	0.520877	0.268245	1.91522	0	0.73123	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047593 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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