TCONS_00047604 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047604
Unique NameTCONS_00047604
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length658

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047604 ID=TCONS_00047604|Name=TCONS_00047604|organism=Clytia hemisphaerica|type=transcript|length=658bp
GACTATACCAACTCGTGTGCTTAAAATTGCAGCAAACGTCTGTGCTCCAT
TCTTAACTTCATGTTTTAATAAGTGCCTGGAATCTGGGATATTTCCAGAC
AGGCTTAAGCTTGCTGATATCACTCCTGTTCTCAAAAAAGGCTCACTTAC
TGATAAGTTCAATTATAGACCAATAAGCTTACTCCCAGTTGTTTCTAAAA
TCTTTGAGCGTTTAATAGTAAATCAATTAAACGCCCATCTCGAaccacat
ttttcaaaactcttgTGTGGTTTTCGAAAAGGTCATAGCACTCAACATGC
CATTTTGAACATGTTGAGGAATTGGCAGAGTGCTAtagcaaatgaccaaa
aagtgggAGTAATCTTAATTGACTTATCTAAAGCCTTTGACTGTTTACCT
CACAACTTACTTTTGGCAAAACTCTCGGCATATGGGCTCAGTGAGAGTGC
CATCCAATTAATGCACAGCTATTTAAGCAATAGGAAGCACAGAGTTCGTA
TAGGTTCTCATTTAAGTTCATGGCTCGATATTTTATTAGGAGTACCCCAA
GGGTCCATCCTTGGGCCATTACTTTTTAATATATTCATAAACGATCTATT
TTATAtcatagatgaaattttaaattttgcagatgatAATACTTTATCTT
CTTCTGGA
Run BLAST on NCBI

protein sequence of TCONS_00047604-protein

>TCONS_00047604-protein ID=TCONS_00047604-protein|Name=TCONS_00047604-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
TIPTRVLKIAANVCAPFLTSCFNKCLESGIFPDRLKLADITPVLKKGSLT
DKFNYRPISLLPVVSKIFERLIVNQLNAHLEPHFSKLLCGFRKGHSTQHA
ILNMLRNWQSAIANDQKVGVILIDLSKAFDCLPHNLLLAKLSAYGLSESA
IQLMHSYLSNRKHRVRIGSHLSSWLDILLGVPQGSILGPLLFNIFINDLF
YIIDEILNFADDNTLSSSG
Run BLAST on NCBI

transcript from alignment at scaffold_132:30758..31415

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047604 ID=TCONS_00047604|Name=TCONS_00047604|organism=Clytia hemisphaerica|type=transcript|length=658bp|location=Sequence derived from alignment at scaffold_132:30758..31415 (Clytia hemisphaerica)
TCCAGAAGAAGATAAAGTATTatcatctgcaaaatttaaaatttcatcta
tgaTATAAAATAGATCGTTTATGAATATATTAAAAAGTAATGGCCCAAGG
ATGGACCCTTGGGGTACTCCTAATAAAATATCGAGCCATGAACTTAAATG
AGAACCTATACGAACTCTGTGCTTCCTATTGCTTAAATAGCTGTGCATTA
ATTGGATGGCACTCTCACTGAGCCCATATGCCGAGAGTTTTGCCAAAAGT
AAGTTGTGAGGTAAACAGTCAAAGGCTTTAGATAAGTCAATTAAGATTAC
TcccactttttggtcatttgctaTAGCACTCTGCCAATTCCTCAACATGT
TCAAAATGGCATGTTGAGTGCTATGACCTTTTCGAAAACCACAcaagagt
tttgaaaaatgtggtTCGAGATGGGCGTTTAATTGATTTACTATTAAACG
CTCAAAGATTTTAGAAACAACTGGGAGTAAGCTTATTGGTCTATAATTGA
ACTTATCAGTAAGTGAGCCTTTTTTGAGAACAGGAGTGATATCAGCAAGC
TTAAGCCTGTCTGGAAATATCCCAGATTCCAGGCACTTATTAAAACATGA
AGTTAAGAATGGAGCACAGACGTTTGCTGCAATTTTAAGCACACGAGTTG
GTATAGTC

Coding sequence (CDS) from alignment at scaffold_132:30758..31415

>TCONS_00047604 ID=TCONS_00047604|Name=TCONS_00047604|organism=Clytia hemisphaerica|type=CDS|length=657bp|location=Sequence derived from alignment at scaffold_132:30758..31415 (Clytia hemisphaerica)
TCCAGAAGAAGATAAAGTATTatcatctgcaaaatttaaaatttcatcta
tgaTATAAAATAGATCGTTTATGAATATATTAAAAAGTAATGGCCCAAGG
ATGGACCCTTGGGGTACTCCTAATAAAATATCGAGCCATGAACTTAAATG
AGAACCTATACGAACTCTGTGCTTCCTATTGCTTAAATAGCTGTGCATTA
ATTGGATGGCACTCTCACTGAGCCCATATGCCGAGAGTTTTGCCAAAAGT
AAGTTGTGAGGTAAACAGTCAAAGGCTTTAGATAAGTCAATTAAGATTAC
TcccactttttggtcatttgctaTAGCACTCTGCCAATTCCTCAACATGT
TCAAAATGGCATGTTGAGTGCTATGACCTTTTCGAAAACCACAcaagagt
tttgaaaaatgtggtTCGAGATGGGCGTTTAATTGATTTACTATTAAACG
CTCAAAGATTTTAGAAACAACTGGGAGTAAGCTTATTGGTCTATAATTGA
ACTTATCAGTAAGTGAGCCTTTTTTGAGAACAGGAGTGATATCAGCAAGC
TTAAGCCTGTCTGGAAATATCCCAGATTCCAGGCACTTATTAAAACATGA
AGTTAAGAATGGAGCACAGACGTTTGCTGCAATTTTAAGCACACGAGTTG
GTATAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030318XLOC_030318Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047604-exon-scaffold_132-1491911889:30758..31415TCONS_00047604-exon-scaffold_132-1491911889:30758..31415Clytia hemisphaericaexon
TCONS_00047604-exon-scaffold_132-1510915933:30758..31415TCONS_00047604-exon-scaffold_132-1510915933:30758..31415Clytia hemisphaericaexon
TCONS_00047604-exon-scaffold_132-1575043694:30758..31415TCONS_00047604-exon-scaffold_132-1575043694:30758..31415Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047604-proteinTCONS_00047604-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_132supercontigscaffold_132:30758..31415 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.154104	0.282435	0.216171	3.99144	2.52755	1.28796	1.90304	1.82934	2.49737	1.48127	2.38276	0.600685	0.775503	0.402467	0.428035	0.224759	0.121595	0.206676	0.0919716	0.609039	0.5469	0.0905971	0.0823659	0.282148	0.321626	1.23927	0.346887	0.175401	0.0985948
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047604 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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