TCONS_00047607 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047607
Unique NameTCONS_00047607
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047607 ID=TCONS_00047607|Name=TCONS_00047607|organism=Clytia hemisphaerica|type=transcript|length=338bp
cgcaaaaaaaacaaaaacaaaaaacgcgGCACGTGTTAAAAAATGGATGT
GATCGAAAAAAGAGGATTCTAATATGTTTTTAGACGAAGTTAATTTTGAC
AATATCAATTTTCTTCGTTTAAGACATACTAATTAATCTTTAATTGGGAT
GATAATTCAAGATGTTGGTGGAAAAGGGAAGGGGTGGAAAGGGGAAGGGC
GAGTTTATCGAAATTAAAATCGGAAGAACCattacaaaaaaattgattaa
aatccTACCGTAACGTAATATATTTTATAGATCTTAAAATTTGATTGTtt
tactctaaggtcccgaatagtagggggggtctgaataa
Run BLAST on NCBI

transcript from alignment at scaffold_132:86317..86654

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047607 ID=TCONS_00047607|Name=TCONS_00047607|organism=Clytia hemisphaerica|type=transcript|length=338bp|location=Sequence derived from alignment at scaffold_132:86317..86654 (Clytia hemisphaerica)
ttattcagaccccccctactattcgggaccttagagtaaaACAATCAAAT
TTTAAGATCTATAAAATATATTACGTTACGGTAggattttaatcaatttt
tttgtaatGGTTCTTCCGATTTTAATTTCGATAAACTCGCCCTTCCCCTT
TCCACCCCTTCCCTTTTCCACCAACATCTTGAATTATCATCCCAATTAAA
GATTAATTAGTATGTCTTAAACGAAGAAAATTGATATTGTCAAAATTAAC
TTCGTCTAAAAACATATTAGAATCCTCTTTTTTCGATCACATCCATTTTT
TAACACGTGCcgcgttttttgtttttgttttttttgcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030321XLOC_030321Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047607-exon-scaffold_132-1491911889:86317..86654TCONS_00047607-exon-scaffold_132-1491911889:86317..86654Clytia hemisphaericaexon
TCONS_00047607-exon-scaffold_132-1510915933:86317..86654TCONS_00047607-exon-scaffold_132-1510915933:86317..86654Clytia hemisphaericaexon
TCONS_00047607-exon-scaffold_132-1575043694:86317..86654TCONS_00047607-exon-scaffold_132-1575043694:86317..86654Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_132supercontigscaffold_132:86317..86654 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.550037	0.268186	0.31139	0.609293	1.11263	1.75844	1.7679	0.993051	0.695259	0.574127	0	0.183161	0.914531	0.3799	1.09315	0	0	0.42322	0	0.305924	0.265904	2.33457	0.315331	0.573363	0	0.527052	0.75421	0.804913	3.35774	4.04301
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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