TCONS_00047608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047608
Unique NameTCONS_00047608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length178

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047608 ID=TCONS_00047608|Name=TCONS_00047608|organism=Clytia hemisphaerica|type=transcript|length=178bp
CAGCAACGATACCAAGATCTCTTGCATATTCATCACCATACCAAACCAAA
AGCTCATCACCAATTTTCATCTCTTTGTACGCTCTGTAATAAATTTGACC
ATGGTATTGAAAAGCAACAAGATTTTGTTCTGATTCAGTTCTTGAACAGT
TGATGTATCTTAACCAGTTTCCGTATTT
Run BLAST on NCBI

transcript from alignment at scaffold_132:204856..205033

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047608 ID=TCONS_00047608|Name=TCONS_00047608|organism=Clytia hemisphaerica|type=transcript|length=178bp|location=Sequence derived from alignment at scaffold_132:204856..205033 (Clytia hemisphaerica)
AAATACGGAAACTGGTTAAGATACATCAACTGTTCAAGAACTGAATCAGA
ACAAAATCTTGTTGCTTTTCAATACCATGGTCAAATTTATTACAGAGCGT
ACAAAGAGATGAAAATTGGTGATGAGCTTTTGGTTTGGTATGGTGATGAA
TATGCAAGAGATCTTGGTATCGTTGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030322XLOC_030322Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047608-exon-scaffold_132-1491911889:204856..205033TCONS_00047608-exon-scaffold_132-1491911889:204856..205033Clytia hemisphaericaexon
TCONS_00047608-exon-scaffold_132-1510915933:204856..205033TCONS_00047608-exon-scaffold_132-1510915933:204856..205033Clytia hemisphaericaexon
TCONS_00047608-exon-scaffold_132-1575043694:204856..205033TCONS_00047608-exon-scaffold_132-1575043694:204856..205033Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_132supercontigscaffold_132:204856..205033 .
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00047608 vs. Swiss-Prot (Human)
Match: PRDM9 (Histone-lysine N-methyltransferase PRDM9 OS=Homo sapiens GN=PRDM9 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.267e-21
Identity = 35/56 (62.50%), Postives = 46/56 (82.14%), Query Frame = -1 
Query:    8 YGNWLRYINCSRTESEQNLVAFQYHGQIYYRAYKEMKIGDELLVWYGDEYARDLGI 175
            + NW+RY+NC+R + EQNLVAFQYH QI+YR  + ++ G ELLVWYGDEY ++LGI
Sbjct:  312 WANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELLVWYGDEYGQELGI 367
The following BLAST results are available for this feature:
BLAST of TCONS_00047608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRDM94.267e-2162.50Histone-lysine N-methyltransferase PRDM9 OS=Homo s... [more]
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