TCONS_00047609 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047609
Unique NameTCONS_00047609
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length146

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047609 ID=TCONS_00047609|Name=TCONS_00047609|organism=Clytia hemisphaerica|type=transcript|length=146bp
CAAATATCGCATTTGTACGGTTTATCACCAGTATGAGTACGAAGATGTTT
TTGCAAATTACTCGACTCACTAAATCTTTTTCCACAAATATCACATTTGT
ACGGTTTATCACCAGTATGAGTACGAAgatgtttttgtaaattttg
Run BLAST on NCBI

transcript from alignment at scaffold_132:206375..206520

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047609 ID=TCONS_00047609|Name=TCONS_00047609|organism=Clytia hemisphaerica|type=transcript|length=146bp|location=Sequence derived from alignment at scaffold_132:206375..206520 (Clytia hemisphaerica)
caaaatttacaaaaacatcTTCGTACTCATACTGGTGATAAACCGTACAA
ATGTGATATTTGTGGAAAAAGATTTAGTGAGTCGAGTAATTTGCAAAAAC
ATCTTCGTACTCATACTGGTGATAAACCGTACAAATGCGATATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030323XLOC_030323Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047609-exon-scaffold_132-1491911889:206375..206520TCONS_00047609-exon-scaffold_132-1491911889:206375..206520Clytia hemisphaericaexon
TCONS_00047609-exon-scaffold_132-1510915933:206375..206520TCONS_00047609-exon-scaffold_132-1510915933:206375..206520Clytia hemisphaericaexon
TCONS_00047609-exon-scaffold_132-1575043694:206375..206520TCONS_00047609-exon-scaffold_132-1575043694:206375..206520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_132supercontigscaffold_132:206375..206520 .
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00047609 vs. Swiss-Prot (Human)
Match: ZN112 (Zinc finger protein 112 OS=Homo sapiens GN=ZNF112 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.037e-17
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = -1 
Query:    6 NLQKHLRTHTGDKPYKCDICGKRFSESSNLQKHLRTHTGDKPYKCD 143
            +LQ H R HTG+KPYKC++CGK FS+ SNLQ H R HTG+KPYKCD
Sbjct:  819 SLQAHHRVHTGEKPYKCEVCGKGFSQRSNLQAHQRVHTGEKPYKCD 864
The following BLAST results are available for this feature:
BLAST of TCONS_00047609 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN1123.037e-1769.57Zinc finger protein 112 OS=Homo sapiens GN=ZNF112 ... [more]
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