TCONS_00047621 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047621
Unique NameTCONS_00047621
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length562

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047621 ID=TCONS_00047621|Name=TCONS_00047621|organism=Clytia hemisphaerica|type=transcript|length=562bp
cAAGGGCGTCTTTTGAATGATTCAGACTGGGGTCAATGTAGCCTATCCAG
GGTCACTGtgtcaaaataaagattttttaatagaacttttattcgatttt
ttcaaaatataaattgactgAAATGTTTTTCgtgaaacatttaaaaaaag
tcaaaccTGATTTAATCATATTATATCTTcacaaaaaattatcaacttaa
gtgaaaaattacaaaaataggcAACCATGTATCAGTTATCATTTAAGCGG
AAAGATTTTCGAAATGGAAATTTCTGATTAAAGCATTGCTTGGAGTATAG
AAACGGTCTCCGAAGTAAACATTGACATGTTTGAAGACTTGGNTTGGAGT
ATAGAAACGATCTCCGAAGTAAACATTGACATGTTTGAAGACTTGGGGTT
TCTTGTTGACGATAGTGTACACTTCAACATTGTTGAAGAAAATGGAGTAT
CGATATTCACCACTTTCCAACAcctataaaaaaggaaaataagaaTAGTT
CATCTATTTTGATTGGTGGACACTCAACCTCGTCCCAGGCCTAATCTCTT
TGTATAATTTAC
Run BLAST on NCBI

transcript from alignment at scaffold_132:339191..339752

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047621 ID=TCONS_00047621|Name=TCONS_00047621|organism=Clytia hemisphaerica|type=transcript|length=562bp|location=Sequence derived from alignment at scaffold_132:339191..339752 (Clytia hemisphaerica)
GTAAATTATACAAAGAGATTAGGCCTGGGACGAGGTTGAGTGTCCACCAA
TCAAAATAGATGAACTAttcttattttccttttttataggTGTTGGAAAG
TGGTGAATATCGATACTCCATTTTCTTCAACAATGTTGAAGTGTACACTA
TCGTCAACAAGAAACCCCAAGTCTTCAAACATGTCAATGTTTACTTCGGA
GATCGTTTCTATACTCCAANCCAAGTCTTCAAACATGTCAATGTTTACTT
CGGAGACCGTTTCTATACTCCAAGCAATGCTTTAATCAGAAATTTCCATT
TCGAAAATCTTTCCGCTTAAATGATAACTGATACATGGTTgcctattttt
gtaatttttcacttaagttgataattttttgtgAAGATATAATATGATTA
AATCAggtttgactttttttaaatgtttcacGAAAAACATTTcagtcaat
ttatattttgaaaaaatcgaataaaagttctattaaaaaatctttatttt
gacaCAGTGACCCTGGATAGGCTACATTGACCCCAGTCTGAATCATTCAA
AAGACGCCCTTg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030335XLOC_030335Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047621-exon-scaffold_132-1491911889:339191..339752TCONS_00047621-exon-scaffold_132-1491911889:339191..339752Clytia hemisphaericaexon
TCONS_00047621-exon-scaffold_132-1510915933:339191..339752TCONS_00047621-exon-scaffold_132-1510915933:339191..339752Clytia hemisphaericaexon
TCONS_00047621-exon-scaffold_132-1575043694:339191..339752TCONS_00047621-exon-scaffold_132-1575043694:339191..339752Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_132supercontigscaffold_132:339191..339752 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	4.14584	1.93039	0.0570692	0	0.55474	2.03651	34.2384	46.3757	16.6309	21.2397	6.01177	11.0579	0.337543	1.20598	0.940961	1.10373	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047621 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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