TCONS_00047623 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047623
Unique NameTCONS_00047623
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047623 ID=TCONS_00047623|Name=TCONS_00047623|organism=Clytia hemisphaerica|type=transcript|length=415bp
GTATTTTTAAACCagttttcttttaattatttcttttagaGATTTCCATT
ACCTCAACTTGAAGGTGACTTTCGGATCAAACTGAAAAAAAGGAGACAAA
GTATAGCATTCAAAAAAGGACCAAGCTGGCATACTAGACATCTCACAGTC
TTACTGAATGAGTTGCtaatatctgaaaatgaatatgcttTTCATACTGG
ATCTATGCTGCACATTGTTCAACTTGAAAATATAAACATATATGATGGAA
GTAATTACAAAGAATGGACCATTCATATCCGGTTAATTGAAGGTGTGAAT
TTCAATGGCTCCACAGAATTCTTTATTGCATTCCCAAGTGAGAAGTTGTT
CAAAGATTGGATGAAAAATCTTCAATACTCCAAAGATTACTGGTATAAGA
AGGAGAATATGCCTG
Run BLAST on NCBI

transcript from alignment at scaffold_133:150031..154261+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047623 ID=TCONS_00047623|Name=TCONS_00047623|organism=Clytia hemisphaerica|type=transcript|length=4231bp|location=Sequence derived from alignment at scaffold_133:150031..154261+ (Clytia hemisphaerica)
GTATTTTTAAACCagttttcttttaattatttcttttagaGATTTCCATT
ACCTCAACTTGAAGGTGACTTTCGGATCAAACTGAAAAAAAGGAGACAAA
GTATAGCATTCAAAAAAGGACCAAGCTGGCATACTAGACATCTCACAGTT
agtatctttatttttctaacaAAATGTTTATTAGAGGTCTCTGTTTGAAA
TAAGAGGGTAGCCAACAAACTTACAAGTGTATCATTTTAAAACTCAATCA
ATGTTACttgttttgaacttgaaaataGAGTTGGCAATAAACAATTTTTT
AGGCTCTTTTGACTTATGTCTTAATTACGGTACAAAATGGGTTTATATGG
GTTTAGTTTGACTATCAGTCAGAAGActgtagcatgaaggtagagcgtCC
AGCTTCAGTGCACAAGGTTgagggttcgatccccagccgggtcaagATGA
TGATGATGCCTCTCtgtttgatgctcagcaactaaagagacggattaagg
gtaagtggagaaatccccTACCTTTTGTACTTtcaggtagacagctatac
AAAAAGacagccttcgggtcgccctcgactgcgtctcaaacttacttact
tacttttcagtcagaaaagaagaaaaaaacaaactagTTTTTGGAAGTGA
AGATAATATTTTTTGGGACTCTCCTACCTGTGTTTTTTTGGATGCGCATT
AGTGAATCCCTCATAATTACTCATAGATCTTGTTAGATATATTATTTATG
ActcatttgaattttttttactttgcctTAGGTCTTACTGAATGAGTTGC
taatatctgaaaatgaatatgcttTTCATACTGGATCTATGCTGCACATT
GTTCAACTTGAAAATGTAAGGTTATTTAGATTAACACAACTATTGTATAA
ACTAACTGTAAAAAATGTAGATTTCTCTGCTTATCACTATGTTTCTTTGT
TTCAGTTACTCTGTAGTCATGGTATTGACAAATGCAGATTAAGTCAAAAA
TACCCCTTTAGATAAAATTTGCAAATCTGTAGATCAATTTGTATTATTCT
TGAAAAGAGCAGAACAAACATGTACCAAAAGGAGCATTCATAGAGAGTTG
TCAAATAAACTGCTTTTGTTACTTTTTGATACAGATAAACATATATGATG
GAAGTAATTACAAAGAATGGACCATTCATATCCGGTTAATTGAAGGTGTG
AATTTCAATGGCTCCACAGAATTCTTTATTGCATTCCCAGTAAGATTTTC
AGTATATTTGTATGTTATTATTTTAAACTATGATCTTTATTTTAACATAT
ttcttcagccaaaattttatgactttcATCTGTTTTGAGAAACGAGCATC
CTTTTAAACATGATTTGCTCCAATAGCTCAAGCAGTGCTGAACAATCCAC
TCTTGACAATTAGTGCACTAACTGAACAACCCATTAAATACAATTTGGAA
TCTTGATTTCAGGATTTTTATAACAAGAAAAGTGCCTTTATTGAATAATT
GATGCATTTTTACGTACTGATATTCATTTTATTGAGCCTGATTCTATGAC
TTTGGTAAGTTAagatcaattttaaattttctactATCAACAATACTATT
TTAAGGAATCACTCAGAATCACTTTCTATTTCTTAAAATTAGAGTGAGAA
GTTGTTCAAAGATTGGATGAAAAATCTTCAATACTCCAAAGATTACTGGT
ATAAGAAGGAGAATATGCCTGATTTGGTATGATTTTGTTTCGATAATGCA
GTGTTGATAGTTCTTTCATATTAGACAGATCTGTTTCAGGATGGTTTTTA
TATAGAGGCTTTACTATCTTTTATACTTGgctaaattttgataaaaattc
aagaatttcaaaatctatttggtatagttttattaaaaaatcaaaaggct
ATGTCATCGTTAGTACAAACATAGAATTGTGCTTTCATATAATAGTTTGT
ATTGACCACTGTTTCAAAGTGTTGTTGTGATCACTTTTTCTAAGACCACT
GATTATTTGATTTTGGTTTCTTTTTCAGAGCAAAAAGGTCGTCAGCAGGT
GAACAATTTTGATTCATTGATTTTTATATTTGGTATCTTAAAGGGGCTAA
TCTtagtgggaactaattttcactgTTTGCCCGAACCGAAAAAATGTTTG
GAAGctcaaaaccgcaaaaattaattgtcacaaaaaatttaagaaaattt
cataactgaaattaattgtttgattttttgaataaaatgtgtatttcatt
ttattaacaattttattgtttaagaAGATGCTTGAGTGAAACTTGAACAG
GGCTTTTCTGATATCACTTATTAATTGAATAGTtcccttaaccctttaag
tgtcaATGTCGtgtatatcagacatgggctatgtaggagggcaaAGCCCT
CCTGTACTGCCTGCCCAATTTGAGTTAGaattcgtcatttttggtctcgt
aggaattggattgggctttatggtcaagcaaaaacagaatcaaaagtgag
tctttccagcgagattataagccaaaaagtcaaaaaatgcaaacatttga
caaaaatccacttttttaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACAA
GGTTgagggttcgatccccagccgggtcaagATAATGATGATGCCTCTCt
gtttgatgctcagcaactaaagagacggattaagggtaagtggagaaatc
cccTACTTtcaggtagacagctatacAAAAAGACTGCGTctcaaacttac
ttacttacttatcagtcagaaaagaaaaaaaaacaaactagtttttcagg
tttttggaAGTGAAGATAATATTTTTTGGGACTCTCCTACCTGTGTTTTT
TTGGATGCGCATTAGTGAATCCCTCATAATTACTCATAGATCTTGTTAGA
TATATTATTTATGActcatttgaattttttttacttataCCTTAGGTCTT
ACTGAATGAGTTGCtaatatctgaaaatgaatatgcttTTCATACTGGAT
CTATGCTGCACATTGTTCAACTTGAAAATGTAAGGTTATTTAGATTAACA
CAACTATTGTATAAACTAACTGTAAAAAATGTAGATTTCTCTGCTTATCA
CTATGTTTCTTTGTTTCAGTTACTCTGTAGTCATGGTATTGACAAATGCA
GATTAAGTCAAAAATACCCCTTTAGATAAAATTTGCAAATCTGTAGATCA
ATTTGTATTATTCTTGAAAAGAGCAGAACAAACATGTACCAAAAGGAGCA
TTCATAGAGAGTTGTCAAATAAACTGCTTTTGTTACTTTTTGATACAGAT
AAACATATATGATGGAAGTAATTACAAAGAATGGACCATTCATATCCGGT
TAATTGAAGGTGTGAATTTCAATGGCTCCACAGAATTCTTTATTGCATTC
CCAGTAAGATTTTCAGTATATTTGTATGTTATATAAACTATGATCTTTAT
TTTAACATATttcttcagccaaaattttatgactttcATCTGTTTTGAGA
AACGAGCATCCTTTTAAACATGATTTGCTCCAATAGCTCAAGCAGTGCTG
AACAATCCACTCTTGACAATTAGTGCACTAACTGAACAACCCATTAAATA
CAATTTGGAATCTTGATTTCAGGATTTTTATAACAAGAAAAGTGCCTTTA
TTGAATAATTGATGCATTTTTACGTACTGATATTCATTTTATTGAGCCTG
ATTCTATGACTTTGGTAAGTTAagatcaattttaaattttctactATCAA
CAATACTATTTTAAGGAATCACTCAGAATCACTTTCTATTTCTTAAAATT
AGAGTGAGAAGTTGTTCAAAGATTGGATGAAAAATCTTCAATACTCCAAA
GATTACTGGTATAAGAAGGAGAATATGCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030337XLOC_030337Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047623-exon-scaffold_133-1491911889:150031..150177TCONS_00047623-exon-scaffold_133-1491911889:150031..150177Clytia hemisphaericaexon
TCONS_00047623-exon-scaffold_133-1510915933:150031..150177TCONS_00047623-exon-scaffold_133-1510915933:150031..150177Clytia hemisphaericaexon
TCONS_00047623-exon-scaffold_133-1575043694:150031..150177TCONS_00047623-exon-scaffold_133-1575043694:150031..150177Clytia hemisphaericaexon
TCONS_00047623-exon-scaffold_133-1491911889:150812..150895TCONS_00047623-exon-scaffold_133-1491911889:150812..150895Clytia hemisphaericaexon
TCONS_00047623-exon-scaffold_133-1510915933:150812..150895TCONS_00047623-exon-scaffold_133-1510915933:150812..150895Clytia hemisphaericaexon
TCONS_00047623-exon-scaffold_133-1575043694:150812..150895TCONS_00047623-exon-scaffold_133-1575043694:150812..150895Clytia hemisphaericaexon
TCONS_00047623-exon-scaffold_133-1491911889:151165..151269TCONS_00047623-exon-scaffold_133-1491911889:151165..151269Clytia hemisphaericaexon
TCONS_00047623-exon-scaffold_133-1510915933:151165..151269TCONS_00047623-exon-scaffold_133-1510915933:151165..151269Clytia hemisphaericaexon
TCONS_00047623-exon-scaffold_133-1575043694:151165..151269TCONS_00047623-exon-scaffold_133-1575043694:151165..151269Clytia hemisphaericaexon
TCONS_00047623-exon-scaffold_133-1491911889:154183..154261TCONS_00047623-exon-scaffold_133-1491911889:154183..154261Clytia hemisphaericaexon
TCONS_00047623-exon-scaffold_133-1510915933:154183..154261TCONS_00047623-exon-scaffold_133-1510915933:154183..154261Clytia hemisphaericaexon
TCONS_00047623-exon-scaffold_133-1575043694:154183..154261TCONS_00047623-exon-scaffold_133-1575043694:154183..154261Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:150031..154261 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.720939	0.33579	0	0.75914	0	0	0	3.04449	0.108104	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.59994	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047623 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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