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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047628 ID=TCONS_00047628|Name=TCONS_00047628|organism=Clytia hemisphaerica|type=transcript|length=196bp
tttagaGATTTCCATTACCTCAACTTGAAGGTGACTTTCGGATCAAACTG
AAAAAAAGGAGACAAAGTATAGCATTCAAAAAAGGACCAAGCTGGCATAC
TAGACATCTCACAGTCTTACTGAATGAGTTGCtaatatctgaaaatgaat
atgcttTTCATACTGGATCTATGCTGCACATTGTTCAACTTGAAAA Run BLAST on NCBI transcript from alignment at scaffold_133:150065..153677+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047628 ID=TCONS_00047628|Name=TCONS_00047628|organism=Clytia hemisphaerica|type=transcript|length=3613bp|location=Sequence derived from alignment at scaffold_133:150065..153677+ (Clytia hemisphaerica)
tttagaGATTTCCATTACCTCAACTTGAAGGTGACTTTCGGATCAAACTG
AAAAAAAGGAGACAAAGTATAGCATTCAAAAAAGGACCAAGCTGGCATAC
TAGACATCTCACAGTTagtatctttatttttctaacaAAATGTTTATTAG
AGGTCTCTGTTTGAAATAAGAGGGTAGCCAACAAACTTACAAGTGTATCA
TTTTAAAACTCAATCAATGTTACttgttttgaacttgaaaataGAGTTGG
CAATAAACAATTTTTTAGGCTCTTTTGACTTATGTCTTAATTACGGTACA
AAATGGGTTTATATGGGTTTAGTTTGACTATCAGTCAGAAGActgtagca
tgaaggtagagcgtCCAGCTTCAGTGCACAAGGTTgagggttcgatcccc
agccgggtcaagATGATGATGATGCCTCTCtgtttgatgctcagcaacta
aagagacggattaagggtaagtggagaaatccccTACCTTTTGTACTTtc
aggtagacagctatacAAAAAGacagccttcgggtcgccctcgactgcgt
ctcaaacttacttacttacttttcagtcagaaaagaagaaaaaaacaaac
tagTTTTTGGAAGTGAAGATAATATTTTTTGGGACTCTCCTACCTGTGTT
TTTTTGGATGCGCATTAGTGAATCCCTCATAATTACTCATAGATCTTGTT
AGATATATTATTTATGActcatttgaattttttttactttgcctTAGGTC
TTACTGAATGAGTTGCtaatatctgaaaatgaatatgcttTTCATACTGG
ATCTATGCTGCACATTGTTCAACTTGAAAATGTAAGGTTATTTAGATTAA
CACAACTATTGTATAAACTAACTGTAAAAAATGTAGATTTCTCTGCTTAT
CACTATGTTTCTTTGTTTCAGTTACTCTGTAGTCATGGTATTGACAAATG
CAGATTAAGTCAAAAATACCCCTTTAGATAAAATTTGCAAATCTGTAGAT
CAATTTGTATTATTCTTGAAAAGAGCAGAACAAACATGTACCAAAAGGAG
CATTCATAGAGAGTTGTCAAATAAACTGCTTTTGTTACTTTTTGATACAG
ATAAACATATATGATGGAAGTAATTACAAAGAATGGACCATTCATATCCG
GTTAATTGAAGGTGTGAATTTCAATGGCTCCACAGAATTCTTTATTGCAT
TCCCAGTAAGATTTTCAGTATATTTGTATGTTATTATTTTAAACTATGAT
CTTTATTTTAACATATttcttcagccaaaattttatgactttcATCTGTT
TTGAGAAACGAGCATCCTTTTAAACATGATTTGCTCCAATAGCTCAAGCA
GTGCTGAACAATCCACTCTTGACAATTAGTGCACTAACTGAACAACCCAT
TAAATACAATTTGGAATCTTGATTTCAGGATTTTTATAACAAGAAAAGTG
CCTTTATTGAATAATTGATGCATTTTTACGTACTGATATTCATTTTATTG
AGCCTGATTCTATGACTTTGGTAAGTTAagatcaattttaaattttctac
tATCAACAATACTATTTTAAGGAATCACTCAGAATCACTTTCTATTTCTT
AAAATTAGAGTGAGAAGTTGTTCAAAGATTGGATGAAAAATCTTCAATAC
TCCAAAGATTACTGGTATAAGAAGGAGAATATGCCTGATTTGGTATGATT
TTGTTTCGATAATGCAGTGTTGATAGTTCTTTCATATTAGACAGATCTGT
TTCAGGATGGTTTTTATATAGAGGCTTTACTATCTTTTATACTTGgctaa
attttgataaaaattcaagaatttcaaaatctatttggtatagttttatt
aaaaaatcaaaaggctATGTCATCGTTAGTACAAACATAGAATTGTGCTT
TCATATAATAGTTTGTATTGACCACTGTTTCAAAGTGTTGTTGTGATCAC
TTTTTCTAAGACCACTGATTATTTGATTTTGGTTTCTTTTTCAGAGCAAA
AAGGTCGTCAGCAGGTGAACAATTTTGATTCATTGATTTTTATATTTGGT
ATCTTAAAGGGGCTAATCTtagtgggaactaattttcactgTTTGCCCGA
ACCGAAAAAATGTTTGGAAGctcaaaaccgcaaaaattaattgtcacaaa
aaatttaagaaaatttcataactgaaattaattgtttgattttttgaata
aaatgtgtatttcattttattaacaattttattgtttaagaAGATGCTTG
AGTGAAACTTGAACAGGGCTTTTCTGATATCACTTATTAATTGAATAGTt
cccttaaccctttaagtgtcaATGTCGtgtatatcagacatgggctatgt
aggagggcaaAGCCCTCCTGTACTGCCTGCCCAATTTGAGTTAGaattcg
tcatttttggtctcgtaggaattggattgggctttatggtcaagcaaaaa
cagaatcaaaagtgagtctttccagcgagattataagccaaaaagtcaaa
aaatgcaaacatttgacaaaaatccacttttttaaNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGCACAAGGTTgagggttcgatccccagccgggtcaagATA
ATGATGATGCCTCTCtgtttgatgctcagcaactaaagagacggattaag
ggtaagtggagaaatccccTACTTtcaggtagacagctatacAAAAAGAC
TGCGTctcaaacttacttacttacttatcagtcagaaaagaaaaaaaaac
aaactagtttttcaggtttttggaAGTGAAGATAATATTTTTTGGGACTC
TCCTACCTGTGTTTTTTTGGATGCGCATTAGTGAATCCCTCATAATTACT
CATAGATCTTGTTAGATATATTATTTATGActcatttgaattttttttac
ttataCCTTAGGTCTTACTGAATGAGTTGCtaatatctgaaaatgaatat
gcttTTCATACTGGATCTATGCTGCACATTGTTCAACTTGAAAATGTAAG
GTTATTTAGATTAACACAACTATTGTATAAACTAACTGTAAAAAATGTAG
ATTTCTCTGCTTATCACTATGTTTCTTTGTTTCAGTTACTCTGTAGTCAT
GGTATTGACAAATGCAGATTAAGTCAAAAATACCCCTTTAGATAAAATTT
GCAAATCTGTAGATCAATTTGTATTATTCTTGAAAAGAGCAGAACAAACA
TGTACCAAAAGGAGCATTCATAGAGAGTTGTCAAATAAACTGCTTTTGTT
ACTTTTTGATACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047628-exon-scaffold_133-1491911889:150065..150177 | TCONS_00047628-exon-scaffold_133-1491911889:150065..150177 | Clytia hemisphaerica | exon |
| TCONS_00047628-exon-scaffold_133-1510915933:150065..150177 | TCONS_00047628-exon-scaffold_133-1510915933:150065..150177 | Clytia hemisphaerica | exon |
| TCONS_00047628-exon-scaffold_133-1575043694:150065..150177 | TCONS_00047628-exon-scaffold_133-1575043694:150065..150177 | Clytia hemisphaerica | exon |
| TCONS_00047628-exon-scaffold_133-1491911889:153326..153407 | TCONS_00047628-exon-scaffold_133-1491911889:153326..153407 | Clytia hemisphaerica | exon |
| TCONS_00047628-exon-scaffold_133-1510915933:153326..153407 | TCONS_00047628-exon-scaffold_133-1510915933:153326..153407 | Clytia hemisphaerica | exon |
| TCONS_00047628-exon-scaffold_133-1575043694:153326..153407 | TCONS_00047628-exon-scaffold_133-1575043694:153326..153407 | Clytia hemisphaerica | exon |
| TCONS_00047628-exon-scaffold_133-1491911889:153677..153677 | TCONS_00047628-exon-scaffold_133-1491911889:153677..153677 | Clytia hemisphaerica | exon |
| TCONS_00047628-exon-scaffold_133-1510915933:153677..153677 | TCONS_00047628-exon-scaffold_133-1510915933:153677..153677 | Clytia hemisphaerica | exon |
| TCONS_00047628-exon-scaffold_133-1575043694:153677..153677 | TCONS_00047628-exon-scaffold_133-1575043694:153677..153677 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_133 | supercontig | scaffold_133:150065..153677 + |
Blast
The following BLAST results are available for this feature:
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