TCONS_00047633 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047633
Unique NameTCONS_00047633
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2910

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047633 ID=TCONS_00047633|Name=TCONS_00047633|organism=Clytia hemisphaerica|type=transcript|length=2910bp
GTAGCGTACAGAGGCATCTTTTATATTAAAAGTTTTCCACAAGATCCTAT
TTTTATTCATGTCCATTGATTAAAACGTTAACCCGATAAAAGGTTTTGAC
AAAAAACgggattttgttttttgttatcGATCATATCATCAGAAAACATC
ATATTTTGATCCAATCGTTATGCATAATCATCGTTCATTAtagatctgaa
aaaaaaatcacataaGTTTGTCATATCAGTACAATTCATATAGTTGGTTG
TTGGTTGTGTCAAACGTACacacacttttcttttgtcactttttttgcAC
CACACTCCGCACACCTGCTGCACAGTTGGGTGCACAAACTGTACATTCGT
ATTAACGCCAGCTCGCACCGCCACGTCACGCCCCGCGTCAAGACAAAATC
GTTGGATTTGGGATAAGAAGGAATAAACAAATCAATAGAGAGTAGTTGCA
GACTTTGTGTAATCGGGACGACATCCTTAAAGAAATATTGCACAAAGATT
GTGATTtcaaagaaaagagaaagagaaactTCGggttttgtgtaaaaaat
ctcCAGAAGTCAAAACACTGGTCAAGAACAAACAGAAAGTTCCTGCTGAC
ATTCAAAACCTCATACAAGGGAAACGATTTACAAACTATacataattatt
ttcaaaacacacaTGTTCACAACCATCAAAGATAAACTTGGACACgttac
aaatttcaaattttcaaatcagaTTCTCAGCAATATTAAAAATCATATCA
GGAAAAGGTTGAAGTGCTGTTATTTCATTAAACATTGTGGGTCAATCTGG
TGGAACTAAAATATTGTTAatacaaactttcaaaaaatataaaaatttct
ctatcgttaaaaaaaaactcttatCATTGCTTATAGCACATAAAAAGCAA
TTCCTCGTAACAGTACAACAATCCGCCATCTACACTTAGATTATTTGCAC
CTCGTCGTTTCACTTGTTGTTGCATTTGATTGGTCGAGTTCACTGAATTT
GCTTGTTGAATCTAATACTACATTTTGTTGGACCTGCTTTTTACTTTGTT
GGTTGATTTGAAGAGTATGACCTTAGATACTACCATGGATAATAATTCAA
TGTCTGGCGATTCTAGTCTTGGTGATGACGAGGTTCGAACTCTTTTCGTC
AGTGGACTTCCAATGGATACAAAACCAAGGGAAATTTATCTGATGTTCCG
CGGTTTCAAGGGCTACCAAAGCTCGCTACTCAAACTGACTGGAAAAGAAG
GCAAAAAAGCAACGCCGGTAGCATTCGTCACCTTCGAAACAAGGGAACAA
GCAGAAACTACTAAATCAGAATTACAGGGAGTTCGATTTGATCCAGAACT
AGCAACTACAATTCGTATCGAATTTGCAAAAGCTAATACAAAAGTATCGA
ATCCCGTATTGAAACCTGCAACTGCGACCAGTATGGTTTTACCTGGAATC
CCGTCACCGACTTTCCCAGCAAATGCTTTCGATTTGGCAGCAGCTGGCTT
ATTTGCACACGCAGATCCAACGAATTGGCCTACAAGCACAGCAAATTTTA
CCGATCTAAATGGCAATCACCTCACTGCACTTCCACAGCAACACCTGCAC
CCTGGCCTCACCACGCTTACAGCTCCAGTATCTATCGCCAACCAAGGCCA
TCACCTGATACATAACCCTATCTTAAACAACGTGGCCGCTTCAGACGCCG
CCAACGCTTGTACAACGCTCTTTGTCGCTAACTTAGGAAGTGGGACCACG
GAAGACGAATTAAAAGCAAGTTTTTGCAGATTTCCAACGTTTCGACGTAT
CAAGATGTTACGTAATAAGAATACGGCTCCCGTAGCATTCGTCGAATACG
GAGAAGTCCTTTACGCCTTGCACGCTAAAACATATTTCCAAGGtggACTT
TTACCTTCGTCAGAAAATGGAGGAATGAGGATCGAGTTTGCTAAAAATAA
AATGGGAGAGACTGGAAAACGAATGGATGGTCAACCAGAGATTATTGCTC
AATGAATGGATAAATGAATGGATTTAGCATTCTGGTAACCATAGCTTTCG
TATAAAAAAAATCCCcgataaattataaaaatatactcattattttttaa
tgaatttacAACAGAAAGTTGTGTAATAATTTTTATACAGCTTAAACACT
CCACGAATAAGGAGATAAAATTGTTTATTATGACCctccaaaaaaaaatg
tttagatttgaaatttagaagaatgaaaataaattttgttttttatattc
ataactttttaacaaaaaatcctccaaaaatattaacacggtttataaaa
atttttgttcaaaagatACAATTGTGTTGTGGAGCAAtacttttgaattt
gatttgattgaataGTACACGAATTCTTTAAGAATTGATAATGAGAATTC
TCTCGTTTCAAGATGCTAGTCCGACAATATGACTTAATCAGTGAGCGTAA
CTTTTTTAGTATTATTTAAATatataattatttatttttttccaaaaaaa
atgtttgaattttttttattatgacCCCTCTTATGATCAGAACCTTTAAG
AATCCAACCTTCAACAACTAGTTGCTTTGAGAATCTCGGAAGAAATGTCC
attagtattttttttgttaattttttttttttaaccaaCCGGAACTACCA
TTTTGTAAGCTTTGATGCctgaataatttcaaaattaatgcCCTCGAGCT
TTTTCCTCAGAAATTTTAAACGCCGAAAAAACTCCATATAATTTTTAATG
TTATCCAACCAATATTATATATAacttagtttgttttttgtttcgtTTCG
AACAATCGAATGAATGATGTACATAtattattatatttcaaaaaattgta
aCTTCATAAAATGAATGATAAGATatcgaaaaaaattgagaagaaaTTGA
CAAAGAAACG
Run BLAST on NCBI

transcript from alignment at scaffold_133:195497..210807+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047633 ID=TCONS_00047633|Name=TCONS_00047633|organism=Clytia hemisphaerica|type=transcript|length=15311bp|location=Sequence derived from alignment at scaffold_133:195497..210807+ (Clytia hemisphaerica)
GTAGCGTACAGAGGCATCTTTTATATTAAAAGTTTTCCACAAGATCCTAT
TTTTATTCATGTCCATTGATTAAAACGTTAACCCGATAAAAGGTTTTGAC
AAAAAACgggattttgttttttgttatcGATCATATCATCAGAAAACATC
ATATTTTGATCCAATCGTTATGCATAATCATCGTTCATTAtagatctgaa
aaaaaaatcacataaGTTTGTCATATCAGTACAATTCATATAGTTGGTTG
TTGGTTGTGTCAAACGTACacacacttttcttttgtcactttttttgcAC
CACACTCCGCACACCTGCTGCACAGTTGGGTGCACAAACTGTACATTCGT
ATTAACGCCAGCTCGCACCGCCACGTCACGCCCCGCGTCAAGACAAAATC
GTTGGATTTGGGATAAGAAGGAATAAACAAATCAATAGAGAGTAGTTGCA
GACTTTGTGTAATCGGGACGACATCCTTAAAGAAATATTGCACAAAGATT
GTGATTtcaaagaaaagagaaagagaaactTCGggttttgtgtaaaaaat
ctcCAGAAGTCAAAACACTGGTCAAGAACAAACAGAAAGTTCCTGCTGAC
ATTCAAAACCTCATACAAGGGAAACGATTTACAAACTATacataattatt
ttcaaaacacacaTGTTCACAACCATCAAAGATAAACTTGGACACgttac
aaatttcaaattttcaaatcagaTTCTCAGCAATATTAAAAATCATATCA
GGAAAAGGTTGAAGTGCTGTTATTTCATTAAACATTGTGGGTCAATCTGG
TGGAACTAAAATATTGTTAatacaaactttcaaaaaatataaaaatttct
ctatcgttaaaaaaaaactcttatCATTGCTTATAGCACATAAAAAGCNA
ATTTCTCTATCGTTAAACAAAAAAACTCTTATCATTGCTTATAGCACATA
AAAAGCAATTCCTCGTAACAGTACAACAATCCGCCATCTACACTTAGATT
ATTTGCACCTCGTCGTTTCACTTGTTGTTGCATTTGATTGGTCGAGTTCA
CTGAATTTGCTTGTTGAATCTAATACTACATTTTGTTGGACCTGCTTTTT
ACTTTGTTGGTTGATTTGAAGAGTATGACCTTAGATACTACCATGGATAA
TAATTCAATGTCTGGCGATTCTAGTCTTGGTGATGACGAGGTAAGATTCG
ATTATACTCAATATCCaaacaacgttcatctaacattcCCTAGGTAACGT
TATTTGATCGTTCAAAAAACGCTGTCTGAGCTCTTTTAGTTTTCTAGCGA
ATGCTGGAATATAATTTTCAACATTTATGTTCtgctttgaaaaatttcca
ggagtttctacaaaaaaaaacaataaaaattgcaCAAAACTGAGTTAGCA
AGCTATGTTTAAGCTCCTACTAAATTGGAGCCTTGTTTCACCTTTTCTTG
GATCTGACCAAACTTCTTTAACGGTTTTCGATACGGCGAACACGTTCAGG
ATGGTCGAGATTCTAAAGGCTTTTGCCTTAATAAAAAATGACACTTCTTA
AACAAATAGTTTGTATTTTTCAACTGTTGCTTTGCCATGCATGATGTTAA
CAAATCAATCACAAAAACTCGGCCTGAGGCACATTAAGACCGTTATGATT
GATGGCCTGTCATAAAGTAGTGTTTTTTGTAAAGATATTATATCTTTGTG
GTTTTCAACCCTACCAACATTAAAAtaacaaatgttttttaaaaccTACA
CTTCGAAAGCACACACAAAACAGACAAGAAAAGTTTGGAATATCATTTCC
TTAAAATATCGTTAAACTTAAGTTCATAGTTTacctatttttgctataat
CTATTGTTACACGATATGCCAAAATGGGGTAGGATCTGTTAGTGTTGTGG
ATTCATAGCGTTTTTATCTATTGCGTAATTGGTGCCCGATTCTAGGCTTC
CAATTTTTGGgtagttttcaaaatttttaaatacagGAAAGTGTGttata
atagcgagtttatttaTTTGCACCTTTGAGGGCGGTAGACCCACAAAATC
GAGGTCGGTAAAAGTACTGATtaaccgtcgtcctcagctggtcaggatct
agtcaaattagaaccatACCGTCTGTTTCGTAGAAAAAcatacatacata
aactcggtattagcatttttatttttacgtgGGGTGCGGGCATTTAATAG
ATGTAATGATGTCTACGCCTTAAAATCTGGTCACACCTTAATCGCCTTAA
ATGGATTGGGTTTAAATTAGCCAGGATTGATCGATTGATTTTCGTGCATT
AATTGACAGGTGTTATTTGAGCACTTCTACAAATTTAGCCCTTCAACTAT
ATCCATGGATCCTTTGGAGACTTTTCTGTAAAGTTTTATAgaaatttcga
aagttttcaTGGGGCGGTAGGAACGTTTTGTAAGTGCTGTGagagaaaca
aaacaaaaaactaagTATGGAAAGTTCTCGTGTTTCTTATATAGAAGAAT
TGTTTGAATGACTTTTCGAATTTTCCcaatattttcattcatcagacatt
gagaaaaatattataatatttttgatgaaaaaattatttttacactTGGC
ACCTGTTTCATGTGgaagaaagaaaaacactttttaattttttaggggCT
TTCGGACCAGGGTTCCCCCTAATTCATTAAATATGTTTTTTCCTCTGTTC
CATTTTTCCCACCTATATCACATGTCGTATAACAAAATATATTGATTTTC
AATGACAATTATTTCATCTTCTTCTAGGTTTCACTTTCCTCTCATCTAAA
TAGTACTTGTTTTCCAAATTTCCCTTTTCAATTAACTTTAAAACACGATT
TGAAAGCTAAAGGGCAAAGGAAACTTCCCCTCAATTTGAACGAAATCTTC
TAAAGAATAATTCCTGAAAGGATTAGCCCAAATTTGTCCAAAGTAATGAT
GCTATTTGTGAAATCATTCATAAAATTCTGTAGAATACCAAAAACTCCAA
AACTTCTCAATACTGAAATTTAAAGATTCTAGATTTTAAGATTCAAAATA
ATGTCGTATGTAATCCCATCTCTTAATCTTAATGCTAAATAAACGAGATC
AATACCTCAGATTTTGCTTGACATTTAATTGCCATGTCCCATTCAAAGAC
AATAGGTTCAGGAAATGAGTTCTAATTTGCCTAATTACTTGTCTTTTCTC
GTACACATGTAAACGAAACCACAATTATCTGTGAAGAAATGCTGAGATTA
CCATTTCCAAAGACATTCAGTGTTTTATCCCCTGTATTTTATCTCAATTC
CCTAACATTACAAAGCGTCGAAACAACGTCTGAATAATGTCTATTTTCAC
ATTCACGTGAATCTTGAAATAATATTCATTCCCTCTGGGGTTTTTAGCGG
TTTTTTAAACAGTTTTAAACAGTTTTAAAGACTTAAGCTTTAAAAATCGG
GCCCAGGATTTTCAACGAAATTATGACCCCTGTCAGGTCAATTTCTTAGA
GTTTTTTAATTCTTAGACCCCGTTATTTCCCCGTTAAAAAGAAGACAGGC
ATAGTCCATCCTCTTGCAGAATATTTCATTATATCTTTGACCCTTTCTTC
TTTCAGGTTCGAACTCTTTTCGTCAGTGGACTTCCAATGGATACAAAACC
AAGGGAAATTTATCTGATGTTCCGCGGTTTCAAGGTATAAATAAGATTGG
ATTTTCATTAAACCGAGAGATTTTTTGTTGCTCGCAGACAGACTTTTGGC
TTATTTCTTTTGGGCATTTCGTCTCCTTTTGAGAGTTTTTGGAAGTCTTT
TGATCAATTTTGATAAGATGGGTATAAGTAATGAAAACACTAtcttttta
gtttaaaattttgagtgaaaaactagacaaatttatgaaatttcaaaaaa
agaaagatcattGCCCTTCTTGTGAAACTTTCTCAATATATTTATGAATT
ATTAACAAGTATTATTTTCACCTTctaaaatattgattttatGGTGGTCG
ATGGTCGTttgaaattaaaagatttttaaaccaCAATATTGGTacccttg
aaaatatttttagaaaactAACTTAAAATTAGTAATATCTCAAACCATTT
AAGACGAGCTTATCTTATTCGGGATTCAATTAAAggagtcaaaaatttga
aatttctgtttcacgttttttcttataagaacaaactatataagaacaag
ttaagaacattataaggcttcgcggactctaaaaaaaccgatttcttagg
aaaatagacaaaaatactcaaaaaacggtgaaaataagaacatgttaaga
atatttttaggcttaaaactcagaaaagttaagaacatccgaaggcttca
aaaattttggatgttcttataaaaaaacgtgtactactacgtgaattttg
aaattcttaatcacagtttgattttttaatttggattatattttacttaa
aaaaaaaaaaaaattgtttcgaATACCCATTTTCTCATCATATTTTCATG
ATCAAAAACCCGCCAAGCTTTTAAAATTACTTCTAACAAGTGCTCAATTC
TCCCTGCTCAGTTGACATCGATTTTCGTGCAAATTGTATATTATTTTCCC
ATTAAAAAGAATTCTTTGATTAATTCCTTCTTTTAAAAGCCGATGTAGAT
ATATCTTAActtggaaaaataaaagactCAGTAAGCTTGTAGCGTTTTGT
TTTTTACTTCTGACTCAAAATTGCCCGGTTGGACAAATGTATAAATTCTT
TTGATCCAGACTTTCAACCGACTGAGTTCTTTTCTAAACTGTTTTCTAAT
TGAATGTTTGTAATAACATATTGCATATAAcacattttacattttaaata
tTACCCTGCATGGTATCTCCCCCATTTTTATATTTACGCCTACTCACGAA
GAAAAGTTTCTGTAAAACCTGGCTTCTAATAAATTTCCAATAAAGCTAGC
TTAGAAATAACAATGTGCTCTTTTTTTTCCAGGGTGTGGCTCTCGCACCC
CTGTTTCCAGGGTTCACCTGACCTACTCACGTTATATATGATTCTGTCTT
TTATACTGCTTGCATAAATTTATAGGGAACGAAATGATTTTCCTTAACTC
GTGAACCTGTCAAGAAATTCGTTGGATTTATCCAGTTTGACATCCCCCCG
TCTGCAGCCCGGGTGctaattttaagcctaaaaatgttcttaacatgttc
atattttgaccattttgtgaatatttttgactattttcataagaaataga
gtgtttttgagtccaaaaagccttagcttttataaaaaaatgttcctaac
ttgttcttaacatattggccagcgaagccttatgttcttatatagtttgc
tcttataaaaaacacttagACAAAATACGTGGTTAGTGTGCAAGACTAAA
GGGTTCCCTTTTGAAACTCTCAAACTTTCCTCAAAGGGGTAAAATACAAC
ACAAAAAACAATTCAGCCTCTTAAAGTGTTTGAAAGTCTTAAAGTAACTA
CCTCAAAAACTCATAATTTCTTAAAGTTTCTTAAAGGGTcttaaaaacgt
caaaaatgtgACTAGATTTTCTAAATTCAGACCATCTAAGCGACGTTTTT
CGAACTCGGGCATAACTGGCAATGTCATAACTGTCAAACCAATTACCACC
TCCCCCTCTTTATGGGGCCTCAATCTCGAGGCTGAAGTAATTTACATTCA
ACCCTTATATTTTCTACTATTAAACATGAAGGATGTACTGAAATTAATTA
TATTTCAATGAAAACTAAAAGTTTACAATTTTGTTTTTAGGGCTACCAAA
GCTCGCTACTCAAACTGACTGGAAAAGAAGGCAAAAAAGCAACGGTTAGT
ATTTTCAAATTGATTATAATAATTTGTTTGTTGCGAtatattttctatat
ttctaATTATAcaagagatttattttagtCTATCTGCACCTTACCGGGAG
AAATATTTCTATGGGAAAATCtggtcaaaattttaagtcACCTTCCCTTC
CTCGCttatttgaataaattaaaatcaaaagtaGCTAAATTCTTCTACAA
TTAGAACAGAGGTTTGACCATTTCTCGTTTTTGAAGTATATTTTTTAGCT
GCTTCTCATGATAATGTGTTTCTCCTATCTTACAGCCGGTAGCATTCGTC
ACCTTCGAAACAAGGGAACAAGCAGAAACTACTAAATCAGAATTACAGGT
ATGGAACCTTTTCTTGgtatttgaaattgttttttttttttcaaaatggt
gacCTCGCTATGCACGTAGTCTTCTTAACTGGACtcgtcatcaaaaatca
tcaaaaacatagTTCAGGAAGAAGTAGACTCTATAGTCCATACTCATTCA
GAATTTTAGCTTTGCCGTGTTAATCTTACCTGCATcatcttttaaacttt
ttacacAGGGAGTTCGATTTGATCCAGAACTAGCAACTACAATTCGTATC
GAATTTGCAAAAGCTAATACAAAAGTATCGAATCCCGTATTGAAACCTGC
AACTGCGACCAGTATGGTTTTACCTGGAATCCCGTCACCGACTTTCCCAG
CAAATGCTTGTAAGTTTTTCTCACCAAACTCTAAAAATAGAGATTGTTAT
GATTGACTGTTACATACTCTCATGTTAAATCTCAAGAgtttaaaactcta
ctttccaaccctAAGTTAAGTTAATTAAAAACTACTTgcggttttttaaa
ttttgctgggAAATTTCCATTTTGTCAAATATTTTAGCCATAGTTGTAGC
TCAGTCGGGAGAGCCTTGCAATCCAAGGATTGTGTCAATCCACAAAGCTT
AGATTTGCTTAATTGGGATGGGATCTAGGCGGCAAGTAACTGGGAACTGA
GATTAGGTGTGGTGTTCCACCTTGCATTCGACTTCTCCATGTCTAGTGTA
AATAGAAGAGGGGATTAACCCCtattattttttgttccatGGACAGCAAC
CAGATTATTACACTTCTTAACCCAAATCTTCTTTGATTCTATCTTCCAGT
CGATTTGGCAGCAGCTGGCTTATTTGCACACGCAGATCCAACGAATTGGC
CTACAAGGTATTTTAGAAAATCATctctttcaatttctttatgaaCAGGT
CGTTTCACGGTCTAAGCCGtaatgattttaaattttgtgagaTTTTTCCT
GTTATGGCAAacgcggaattgtttttaccacgtttttcaatacacctttt
aaCAATTCAAATATTATGAGACTGGATTGGGTTGGGTTGGAGTTTACCGG
GAGATATTGAcgtcaattcatgatatgcaccattgcaatgtcttccacgg
acccaacagctgattggttaaatATGACGTATTGagtgattttacgtcac
ttaaaaccaatcagctattgggtccgtggtGTAATGATAAGAAAATCAAC
TACCTGGTAACCTCTAGTTCAGTCCCCTTACACTTCAAGGGTTGATAGAT
AGGTGTATATAATGTCTTATCACTTAAGACCTAATTACACTGACCGTTTT
TTAAATATACCTGATAGCACATTATCAACATGTAGCAAGGGCCTCTCAAA
CAAAAACCATGCACACATACACATACATATAATCTTATGTCGGTTTTCTC
GGTTCCGTAAAGTCAACATAAAAACCAGAAAGCACACAATGTTGTTTGAA
TGCGTTAATACAACATCAAGTATCCTAGATGGATGTTTTCATGACGTTAT
GTGCCGGACCTAGAAAACTGTCTACTGCATTTTTGGAATAGACGTTATAG
TTGGGGTCAATTTCTTCATATTTTCTAGCACAGCAAATTTTACCGATCTA
AATGGCAATCACCTCACTGCACTTCCACAGCAACACCTGCACCCTGGCCT
CACCACGGTAAGTTTCTTCCTCCGCCCGTATCTACGCCCATTCANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNATTGACACATGACACTGATATTTTACTAATAAACATTAATTTAC
AACTTATCCTGCATGCTATAATTGACTCATCTAAACTTCTtgtaaaaatg
agaaaattgacaaaattatttCTATACACACACATACACACAATTTCAGT
TCCTTTATGCAACTTTTAAGttccaaaacattttttacGTTCAAGGCACA
TATTTATGTCCATTTTAACATCTCAATGGCAGCACTATAATAAAGCTGGG
TTAATATTTTATATGCCCAAGTGTATctaggatttaaaagctcaactTGG
ATTTTGTTATCTTTGTTTTAAGGCTGTCCCACACTCGGCCTTTGACCGTC
TGGCCACCCTCTCCTGCAGCCTTCCTGTAAGTCTAAAAAAAAGCTggaaa
aaatatgaatttcgCACCCAATCACCAAAAATACACCaaaaacactttcg
atttcgcacactcaaacacaaaaaatacacaacaccttaatatacgctaa
aattattGCTAGCACAAACCAccaaacacaaaaaaaacacaAGATACACT
ACACTAGCTTTATAATGCAAAATGTCCCATTCTATAGAAGTCACTTTTAA
AACATGCAAAAGTTgatgtaaaaaaattgaaattgtgaTGTCTGTgtatg
aaaatgaaataaacgcACTTTTGTCAAATATTTAGAGTTTTAAACATTAC
TTAATTCTGCAGAGTATCTGGCTAGTGTCTGTTTTCATTATTAAACGGGT
TTTCCCAGTATAAGAAATGAAACAATCTTGAtgtatacagtgtgtcccga
aaaaagcggacACGTTTTTTTACGAATCAATAAAATAGTATCAAAATTCT
Ccgttcaatcaatagatatttaattcccaagatgattgaatatgtttttg
agaTTGAGTCATAATAAAATTTCGcataaattatgaggattttactttat
gtAAAAATTTATTCGCTTTTTCACTTTATATAGAAACAATTCTGTAcaca
tgttttttaataagaacgtcaaaaatccCTGAAaccttcaaaactttttg
agtttaaaatctaaaaaatgctCTTATCTTCACCATTTAAAGAGATCGGC
TGTTTTAGATTCTGTAAAATCTTAAAGGACCTTATAatgttctttctttc
ttttttttttgtaatcgaAGCCTCGTATAAAAACTTATATACAGTTTTTT
ATTACGAAAAACCTGTAGTTGAGTGAAGCTCTTCAAAGTTCTATTGATAA
CTTTTGCAAATTTCATGAATTGCTGTACACACCGAGATGAAGTAAATTTC
GAAACtaaattttccataaaaaatccATAACCTATCGTAAATCTGAGTTC
Tgcatagtctgaatcgcagaccagtatagatatacttcctatataagaag
aaataagaaacttttttcgctagaggatgagcagaagcctagttTCCGCA
AAGGGTGCCATTTTTTTACAGAAATACTACCAGAAAATCCCTTTTGCTAT
TATGGACTAAAACACGCTTTTAATAGGAACAAACTTTAAAgtacataagg
cttcgatgaccaaaatattaagaacaggttaagaacattttaaggctttg
tggaatacccgatttcttaggaaaatggacaaaaatactcaataaACGGT
GCAAAAGAGAACACCTttggacttaaaactcaaaggtgtatcaaaacatt
caaaatcacaCAACCAGATACTCTACAGTTTAAGTAACCATCTACACACA
AACAATCCACCAAAACTTTTAATcctttcttctttctcgtaGCTTACAGC
TCCAGTATCTATCGCCAACCAAGGCCATCACCTGATACATAACCCTATCT
TAAACAACGTGGCCGCTTCAGACGCCGCCAACGCTTGTACAACGCTCTTT
GTCGCTAACTTAGGAAGTGGGACCACGGAAGACGAATTAAAAGCAAGTTT
TTGCAGGTAAGTGGACTAGATTCAAACCACGTAGTCACACATTACGGCtt
tattgttgttgttggaaAATTGACTGAAACGTACCGCCATCTTCCGTCAA
CAAGCCTACACATANACGCTCTTTGTCGCTAACTTAGGAAGTGGGACCAC
GGAAGACGAATTAAAAGCAAGTTTTTGCAGGTAAGTGGACTAGATTCAAA
CCACGTAGTCACACATTACGGCtttattgttgttgttggaaAATTGACTG
AAACGTACCGCCATCTTCCGTCAAAAAGCCTACACATAGGCTGCGCACGT
ccccaaaattgattttgatcgTATAAAATTCCCatccgagagttacccca
aatttgggaAAAACTGTTTCAATTTTACTATAAAGGTTCAGAATTCCAAT
ACACatgttgcaaaattaaagtctgaatacaaatcacgcttttattcgga
atttttatgtgcttgttacatgacattcatttctgattggttcgaattta
ttgccACTAATAAAGTTATAAGCTGTAAGTTGttaagcaagtaacatggg
gataaaatcacgtgaaatttttcgagtaatcacatgttttgactgtaTTG
ATATGaatttgcaacccgtgtattcaagttaaatgaaatttaaagatctc
tcatataaaactttactaatcaagtttctaaaactttaaaacacaaacac
aGGCTAGCTCTCGgatgggaattttatacacgatacgccctagtctgaat
cgcagacctctacaaaaccccaggtagtatagtatgctctataaggagca
cgaatccgttagtggatggcAGTGGAAGCCTAGATACGCCCCCcttcccc
tatatcaaaacatatcagaggggatgtgtgcaacCAGGATACACACAAAT
TTTAACTAATCGTCACAACCGTAGAAAACACAATATCCCCACAATATAAA
CTTGCTATTAGCTCAGTTTTGACGTTGGTCGTTTTCAATGTTGGTGAAAA
TAATCAATCTTGagtatttcaaactttttctttatctGAGCTGGTACACA
ATATCAGATTATTTCACCAGTGCTAAACAAGAAAGAACTCGGGGATTTGG
ACTAATCTTAAATAACTTTCTTCCGCTTTCAGATTTCCAACGTTTCGACG
TATCAAGATGTTACGTAATAAGAATACGGCTCCCGTAGCATTCGTCGAAT
ACGGAGAAGTCCTTTACGCCTTGCACGCTAAAACATATTTCCAAGGGTAA
GTACTATACattaaaatttgccaaattcaaAATTCTCTGAAAAAGTACTC
TACTCCTAAGGACATTTCCTAGGTCAAGAAATACACCGAAAAGTACATTT
TTCTTAGCAAATTGGAACTCCTACTGGAAAAAAAGTATACTCCCCTTTTA
GGTGCTATGCTGGAAAATCAATTCATTTAAGTATGCCTTCAGACTTAAAT
GCTTAAACCCTTATCATTCTTCAGGATACTATTCTTCGGGATAAGATAAG
TTGGGTAGAAATCCTGtccgaaaaaaagttatttaccGGCCGCTGACTAA
CTTTAAAAATCAAGTATAATAAGAACTAAGGAGATTTTTGACTCCAGTCT
CCATTTAAAAATTCGTTGATCTAATCTTTCAAATGCGAAATTGACCTTAA
GCATTTCTATCAAATTTCCTTATGAAATACGAGTGTAAAAGGGAAGTAGC
ACAACCCTTTCTCAAACACCCGGTGGTACCCCctcccattggaaaaattg
gccaaaatatcgttcccagTGGAAAATCATACTCCAATTTTTGCCATCGT
CACTGACgggtgaaaaataaaatttctgacTCGGCCGCAGAttttcgtta
gtagttgatacattagtcttcagggcttacttcatactgtttgtacataa
aaattatctttaaagttatatttcaattatcttaagttatcaaaaatagc
caAATCATAGCCGGCCGCATGAGTgctttttccttcacccgcattccgga
aacactacatttttttactttcgcCTTACCTGGAACATTTTACACCGGTG
ACATATATTACTTTTACTACTTCTCTTTTAATTAAAAACCTATGCATAat
ttaaaagttcttttttcGACTATGATTTTAGGCATATTTAATCAATATCC
AATTTGACCTATTGACTTGTGAATATTTCAGTCATTACCTAGGCATATAC
TCAGCTAAAATATTTACCCAgcctgaatttaaaaaacatttatctCCGCA
AATTATGACAATTGTCATATATCTCTTTCCGTCAATTACGAATAAAGCTC
AAAAATAtgtttacttatttttcttatttttcttttagtggACTTTTACC
TTCGTCAGAAAATGGAGGAATGAGGATCGAGTTTGCTAAAAATAAAATGG
GAGAGGTAGGAAACCttttttaatatgttttattttctttctaaaattAC
AGTTGTTTTGAGCCTTGTGGGTACAATCGTTGCCAAAACCCCTGTCTATA
CACCTTTTTCAACCTCTAAAACCCCCCAAATTCAAtgttgtttttaagat
ttttagcCTAGTCCCAACAACTTCCTCATCAACACTGATATTGGGCGGAG
GGGGTGGACAATTAGTTTTATCCAGAATTCAACCAGGACAGATTTGTCCA
GGAAGTTATCGAAAGAATGATTATATCATTAAGAACACGAGACGAGACGG
TAGTTTTGCCGGAACCTGAAAACAAACAGACAAcgcattttttggaaaat
ctaagaagtttaaaaattatcaaaaattgatttcgaCAAGTTACGAAAAA
ATATCTGAGGCACGGAATGATGCCTGACTTTAACAAATCGTACCTCGCGG
TTCTTTTCCTGATCTCACAAACAACTGAGCTTCCAAGATTCAAATATTTC
AACAAAACCAACTACAAAACCAACGAAATAATTCACTCAAtatttgttat
gttttttttagACTGGAAAACGAATGGATGGTCAACCAGAGATTATTGCT
CAATGAATGGATAAATGAATGGATTTAGCATTCTGGTAACCATAGCTTTC
GTATAAAAAAAATCCCcgataaattataaaaatatactcattatttttta
atgaatttacAACAGAAAGTTGTGTAATAATTTTTATACAGCTTAAACAC
TCCACGAATAAGGAGATAAAATTGTTTATTATGACCctccaaaaaaaaat
gtttagatttgaaatttagaagaatgaaaataaattttgttttttatatt
cataactttttaacaaaaaatcctccaaaaatattaacacggtttataaa
aatttttgttcaaaagatACAATTGTGTTGTGGAGCAAtacttttgaatt
tgatttgattgaataGTACACGAATTCTTTAAGAATTGATAATGAGAATT
CTCTCGTTTCAAGATGCTAGTCCGACAATATGACTTAATCAGTGAGCGTA
ACTTTTTTAGTATTATTTAAATatataattatttatttttttccaaaaaa
aatgtttgaattttttttattatgacCCCTCTTATGATCAGAACCTTTAA
GAATCCAACCTTCAACAACTAGTTGCTTTGAGAATCTCGGAAGAAATGTC
CattagtattttttttgttaattttttttttttaaccaaCCGGAACTACC
ATTTTGTAAGCTTTGATGCctgaataatttcaaaattaatgcCCTCGAGC
TTTTTCCTCAGAAATTTTAAACGCCGAAAAAACTCCATATAATTTTTAAT
GTTATCCAACCAATATTATATATAacttagtttgttttttgtttcgtTTC
GAACAATCGAATGAATGATGTACATAtattattatatttcaaaaaattgt
aaCTTCATAAAATGAATGATAAGATatcgaaaaaaattgagaagaaaTTG
ACAAAGAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030338XLOC_030338Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047633-exon-scaffold_133-1491911889:195497..196385TCONS_00047633-exon-scaffold_133-1491911889:195497..196385Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1510915933:195497..196385TCONS_00047633-exon-scaffold_133-1510915933:195497..196385Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1575043694:195497..196385TCONS_00047633-exon-scaffold_133-1575043694:195497..196385Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1491911889:196444..196686TCONS_00047633-exon-scaffold_133-1491911889:196444..196686Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1510915933:196444..196686TCONS_00047633-exon-scaffold_133-1510915933:196444..196686Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1575043694:196444..196686TCONS_00047633-exon-scaffold_133-1575043694:196444..196686Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1491911889:199103..199180TCONS_00047633-exon-scaffold_133-1491911889:199103..199180Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1510915933:199103..199180TCONS_00047633-exon-scaffold_133-1510915933:199103..199180Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1575043694:199103..199180TCONS_00047633-exon-scaffold_133-1575043694:199103..199180Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1491911889:201287..201340TCONS_00047633-exon-scaffold_133-1491911889:201287..201340Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1510915933:201287..201340TCONS_00047633-exon-scaffold_133-1510915933:201287..201340Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1575043694:201287..201340TCONS_00047633-exon-scaffold_133-1575043694:201287..201340Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1491911889:201632..201694TCONS_00047633-exon-scaffold_133-1491911889:201632..201694Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1510915933:201632..201694TCONS_00047633-exon-scaffold_133-1510915933:201632..201694Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1575043694:201632..201694TCONS_00047633-exon-scaffold_133-1575043694:201632..201694Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1491911889:201905..202055TCONS_00047633-exon-scaffold_133-1491911889:201905..202055Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1510915933:201905..202055TCONS_00047633-exon-scaffold_133-1510915933:201905..202055Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1575043694:201905..202055TCONS_00047633-exon-scaffold_133-1575043694:201905..202055Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1491911889:202496..202553TCONS_00047633-exon-scaffold_133-1491911889:202496..202553Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1510915933:202496..202553TCONS_00047633-exon-scaffold_133-1510915933:202496..202553Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1575043694:202496..202553TCONS_00047633-exon-scaffold_133-1575043694:202496..202553Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1491911889:203275..203353TCONS_00047633-exon-scaffold_133-1491911889:203275..203353Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1510915933:203275..203353TCONS_00047633-exon-scaffold_133-1510915933:203275..203353Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1575043694:203275..203353TCONS_00047633-exon-scaffold_133-1575043694:203275..203353Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1491911889:206739..206902TCONS_00047633-exon-scaffold_133-1491911889:206739..206902Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1510915933:206739..206902TCONS_00047633-exon-scaffold_133-1510915933:206739..206902Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1575043694:206739..206902TCONS_00047633-exon-scaffold_133-1575043694:206739..206902Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1491911889:208029..208142TCONS_00047633-exon-scaffold_133-1491911889:208029..208142Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1510915933:208029..208142TCONS_00047633-exon-scaffold_133-1510915933:208029..208142Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1575043694:208029..208142TCONS_00047633-exon-scaffold_133-1575043694:208029..208142Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1491911889:209235..209301TCONS_00047633-exon-scaffold_133-1491911889:209235..209301Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1510915933:209235..209301TCONS_00047633-exon-scaffold_133-1510915933:209235..209301Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1575043694:209235..209301TCONS_00047633-exon-scaffold_133-1575043694:209235..209301Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1491911889:209858..210807TCONS_00047633-exon-scaffold_133-1491911889:209858..210807Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1510915933:209858..210807TCONS_00047633-exon-scaffold_133-1510915933:209858..210807Clytia hemisphaericaexon
TCONS_00047633-exon-scaffold_133-1575043694:209858..210807TCONS_00047633-exon-scaffold_133-1575043694:209858..210807Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:195497..210807 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.111121	0.0430081	0.0420769	0	0	17.7006	21.9659	3.97579	5.80517	5.65702	4.27949	30.1996	28.8967	1.10002	0.555524	19.3858	24.8004	34.1035	27.1812	25.8922	23.358	8.54948	6.1595	0.286949	5.45027	3.93436	3.28312	0.0361677	0.0429545
Blast
[Close]
BLAST of TCONS_00047633 vs. Swiss-Prot (Human)
Match: RBPMS (RNA-binding protein with multiple splicing OS=Homo sapiens GN=RBPMS PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 8.032e-33
Identity = 57/105 (54.29%), Postives = 81/105 (77.14%), Query Frame = 2 
Query: 1088 DNNSMSGDSSLGDDEVRTLFVSGLPMDTKPREIYLMFRGFKGYQSSLLKLTGKEGKKATPVAFVTFETREQAETTKSELQGVRFDPELATTIRIEFAKANTKVSN 1402
            +  +   +++L ++EVRTLFVSGLP+D KPRE+YL+FR FKGY+ SL+KLT K+     PV FV+F++R +AE  K+ L G+RFDPE+  T+R+EFAKANTK++ 
Sbjct:    8 EKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAK 107
The following BLAST results are available for this feature:
BLAST of TCONS_00047633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBPMS8.032e-3354.29RNA-binding protein with multiple splicing OS=Homo... [more]
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