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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047634 ID=TCONS_00047634|Name=TCONS_00047634|organism=Clytia hemisphaerica|type=transcript|length=1196bp
ACGCTCTTTGTCGCTAACTTAGGAAGTGGGACCACGGAAGACGAATTAAA
AGCAAGTTTTTGCAGATTTCCAACGTTTCGACGTATCAAGATGTTACGTA
ATAAGAATACGGCTCCCGTAGCATTCGTCGAATACGGAGAAGTCCTTTAC
GCCTTGCACGCTAAAACATATTTCCAAGGtggACTTTTACCTTCGTCAGA
AAATGGAGGAATGAGGATCGAGTTTGCTAAAAATAAAATGGGAGAGACTG
GAAAACGAATGGATGGTCAACCAGAGATTATTGCTCAATGAATGGATAAA
TGAATGGATTTAGCATTCTGGTAACCATAGCTTTCGTATAAAAAAAATCC
CcgataaattataaaaatatactcattattttttaatgaatttacAACAG
AAAGTTGTGTAATAATTTTTATACAGCTTAAACACTCCACGAATAAGGAG
ATAAAATTGTTTATTATGACCctccaaaaaaaaatgtttagatttgaaat
ttagaagaatgaaaataaattttgttttttatattcataactttttaaca
aaaaatcctccaaaaatattaacacggtttataaaaatttttgttcaaaa
gatACAATTGTGTTGTGGAGCAAtacttttgaatttgatttgattgaata
GTACACGAATTCTTTAAGAATTGATAATGAGAATTCTCTCGTTTCAAGAT
GCTAGTCCGACAATATGACTTAATCAGTGAGCGTAACTTTTTTAGTATTA
TTTAAATatataattatttatttttttccaaaaaaaatgtttgaattttt
tttattatgacCCCTCTTATGATCAGAACCTTTAAGAATCCAACCTTCAA
CAACTAGTTGCTTTGAGAATCTCGGAAGAAATGTCCattagtattttttt
tgttaattttttttttttaaccaaCCGGAACTACCATTTTGTAAGCTTTG
ATGCctgaataatttcaaaattaatgcCCTCGAGCTTTTTCCTCAGAAAT
TTTAAACGCCGAAAAAACTCCATATAATTTTTAATGTTATCCAACCAATA
TTATATATAacttagtttgttttttgtttcgtTTCGAACAATCGAATGAA
TGATGTACATAtattattatatttcaaaaaattgtaaCTTCATAAAATGA
ATGATAAGATatcgaaaaaaattgagaagaaaTTGACAAAGAAACG Run BLAST on NCBI transcript from alignment at scaffold_133:207012..210807+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047634 ID=TCONS_00047634|Name=TCONS_00047634|organism=Clytia hemisphaerica|type=transcript|length=3796bp|location=Sequence derived from alignment at scaffold_133:207012..210807+ (Clytia hemisphaerica)
ACGCTCTTTGTCGCTAACTTAGGAAGTGGGACCACGGAAGACGAATTAAA
AGCAAGTTTTTGCAGGTAAGTGGACTAGATTCAAACCACGTAGTCACACA
TTACGGCtttattgttgttgttggaaAATTGACTGAAACGTACCGCCATC
TTCCGTCAAAAAGCCTACACATAGGCTGCGCACGTccccaaaattgattt
tgatcgTATAAAATTCCCatccgagagttaccccaaatttgggaAAAACT
GTTTCAATTTTACTATAAAGGTTCAGAATTCCAATACACatgttgcaaaa
ttaaagtctgaatacaaatcacgcttttattcggaatttttatgtgcttg
ttacatgacattcatttctgattggttcgaatttattgccACTAATAAAG
TTATAAGCTGTAAGTTGttaagcaagtaacatggggataaaatcacgtga
aatttttcgagtaatcacatgttttgactgtaTTGATATGaatttgcaac
ccgtgtattcaagttaaatgaaatttaaagatctctcatataaaacttta
ctaatcaagtttctaaaactttaaaacacaaacacaGGCTAGCTCTCGga
tgggaattttatacacgatacgccctagtctgaatcgcagacctctacaa
aaccccaggtagtatagtatgctctataaggagcacgaatccgttagtgg
atggcAGTGGAAGCCTAGATACGCCCCCcttcccctatatcaaaacatat
cagaggggatgtgtgcaacCAGGATACACACAAATTTTAACTAATCGTCA
CAACCGTAGAAAACACAATATCCCCACAATATAAACTTGCTATTAGCTCA
GTTTTGACGTTGGTCGTTTTCAATGTTGGTGAAAATAATCAATCTTGagt
atttcaaactttttctttatctGAGCTGGTACACAATATCAGATTATTTC
ACCAGTGCTAAACAAGAAAGAACTCGGGGATTTGGACTAATCTTAAATAA
CTTTCTTCCGCTTTCAGATTTCCAACGTTTCGACGTATCAAGATGTTACG
TAATAAGAATACGGCTCCCGTAGCATTCGTCGAATACGGAGAAGTCCTTT
ACGCCTTGCACGCTAAAACATATTTCCAAGGGTAAGTACTATACattaaa
atttgccaaattcaaAATTCTCTGAAAAAGTACTCTACTCCTAAGGACAT
TTCCTAGGTCAAGAAATACACCGAAAAGTACATTTTTCTTAGCAAATTGG
AACTCCTACTGGAAAAAAAGTATACTCCCCTTTTAGGTGCTATGCTGGAA
AATCAATTCATTTAAGTATGCCTTCAGACTTAAATGCTTAAACCCTTATC
ATTCTTCAGGATACTATTCTTCGGGATAAGATAAGTTGGGTAGAAATCCT
GtccgaaaaaaagttatttaccGGCCGCTGACTAACTTTAAAAATCAAGT
ATAATAAGAACTAAGGAGATTTTTGACTCCAGTCTCCATTTAAAAATTCG
TTGATCTAATCTTTCAAATGCGAAATTGACCTTAAGCATTTCTATCAAAT
TTCCTTATGAAATACGAGTGTAAAAGGGAAGTAGCACAACCCTTTCTCAA
ACACCCGGTGGTACCCCctcccattggaaaaattggccaaaatatcgttc
ccagTGGAAAATCATACTCCAATTTTTGCCATCGTCACTGACgggtgaaa
aataaaatttctgacTCGGCCGCAGAttttcgttagtagttgatacatta
gtcttcagggcttacttcatactgtttgtacataaaaattatctttaaag
ttatatttcaattatcttaagttatcaaaaatagccaAATCATAGCCGGC
CGCATGAGTgctttttccttcacccgcattccggaaacactacatttttt
tactttcgcCTTACCTGGAACATTTTACACCGGTGACATATATTACTTTT
ACTACTTCTCTTTTAATTAAAAACCTATGCATAatttaaaagttcttttt
tcGACTATGATTTTAGGCATATTTAATCAATATCCAATTTGACCTATTGA
CTTGTGAATATTTCAGTCATTACCTAGGCATATACTCAGCTAAAATATTT
ACCCAgcctgaatttaaaaaacatttatctCCGCAAATTATGACAATTGT
CATATATCTCTTTCCGTCAATTACGAATAAAGCTCAAAAATAtgtttact
tatttttcttatttttcttttagtggACTTTTACCTTCGTCAGAAAATGG
AGGAATGAGGATCGAGTTTGCTAAAAATAAAATGGGAGAGGTAGGAAACC
ttttttaatatgttttattttctttctaaaattACAGTTGTTTTGAGCCT
TGTGGGTACAATCGTTGCCAAAACCCCTGTCTATACACCTTTTTCAACCT
CTAAAACCCCCCAAATTCAAtgttgtttttaagatttttagcCTAGTCCC
AACAACTTCCTCATCAACACTGATATTGGGCGGAGGGGGTGGACAATTAG
TTTTATCCAGAATTCAACCAGGACAGATTTGTCCAGGAAGTTATCGAAAG
AATGATTATATCATTAAGAACACGAGACGAGACGGTAGTTTTGCCGGAAC
CTGAAAACAAACAGACAAcgcattttttggaaaatctaagaagtttaaaa
attatcaaaaattgatttcgaCAAGTTACGAAAAAATATCTGAGGCACGG
AATGATGCCTGACTTTAACAAATCGTACCTCGCGGTTCTTTTCCTGATCT
CACAAACAACTGAGCTTCCAAGATTCAAATATTTCAACAAAACCAACTAC
AAAACCAACGAAATAATTCACTCAAtatttgttatgttttttttagACTG
GAAAACGAATGGATGGTCAACCAGAGATTATTGCTCAATGAATGGATAAA
TGAATGGATTTAGCATTCTGGTAACCATAGCTTTCGTATAAAAAAAATCC
CcgataaattataaaaatatactcattattttttaatgaatttacAACAG
AAAGTTGTGTAATAATTTTTATACAGCTTAAACACTCCACGAATAAGGAG
ATAAAATTGTTTATTATGACCctccaaaaaaaaatgtttagatttgaaat
ttagaagaatgaaaataaattttgttttttatattcataactttttaaca
aaaaatcctccaaaaatattaacacggtttataaaaatttttgttcaaaa
gatACAATTGTGTTGTGGAGCAAtacttttgaatttgatttgattgaata
GTACACGAATTCTTTAAGAATTGATAATGAGAATTCTCTCGTTTCAAGAT
GCTAGTCCGACAATATGACTTAATCAGTGAGCGTAACTTTTTTAGTATTA
TTTAAATatataattatttatttttttccaaaaaaaatgtttgaattttt
tttattatgacCCCTCTTATGATCAGAACCTTTAAGAATCCAACCTTCAA
CAACTAGTTGCTTTGAGAATCTCGGAAGAAATGTCCattagtattttttt
tgttaattttttttttttaaccaaCCGGAACTACCATTTTGTAAGCTTTG
ATGCctgaataatttcaaaattaatgcCCTCGAGCTTTTTCCTCAGAAAT
TTTAAACGCCGAAAAAACTCCATATAATTTTTAATGTTATCCAACCAATA
TTATATATAacttagtttgttttttgtttcgtTTCGAACAATCGAATGAA
TGATGTACATAtattattatatttcaaaaaattgtaaCTTCATAAAATGA
ATGATAAGATatcgaaaaaaattgagaagaaaTTGACAAAGAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047634-exon-scaffold_133-1491911889:207012..207076 | TCONS_00047634-exon-scaffold_133-1491911889:207012..207076 | Clytia hemisphaerica | exon |
| TCONS_00047634-exon-scaffold_133-1510915933:207012..207076 | TCONS_00047634-exon-scaffold_133-1510915933:207012..207076 | Clytia hemisphaerica | exon |
| TCONS_00047634-exon-scaffold_133-1575043694:207012..207076 | TCONS_00047634-exon-scaffold_133-1575043694:207012..207076 | Clytia hemisphaerica | exon |
| TCONS_00047634-exon-scaffold_133-1491911889:208029..208142 | TCONS_00047634-exon-scaffold_133-1491911889:208029..208142 | Clytia hemisphaerica | exon |
| TCONS_00047634-exon-scaffold_133-1510915933:208029..208142 | TCONS_00047634-exon-scaffold_133-1510915933:208029..208142 | Clytia hemisphaerica | exon |
| TCONS_00047634-exon-scaffold_133-1575043694:208029..208142 | TCONS_00047634-exon-scaffold_133-1575043694:208029..208142 | Clytia hemisphaerica | exon |
| TCONS_00047634-exon-scaffold_133-1491911889:209235..209301 | TCONS_00047634-exon-scaffold_133-1491911889:209235..209301 | Clytia hemisphaerica | exon |
| TCONS_00047634-exon-scaffold_133-1510915933:209235..209301 | TCONS_00047634-exon-scaffold_133-1510915933:209235..209301 | Clytia hemisphaerica | exon |
| TCONS_00047634-exon-scaffold_133-1575043694:209235..209301 | TCONS_00047634-exon-scaffold_133-1575043694:209235..209301 | Clytia hemisphaerica | exon |
| TCONS_00047634-exon-scaffold_133-1491911889:209858..210807 | TCONS_00047634-exon-scaffold_133-1491911889:209858..210807 | Clytia hemisphaerica | exon |
| TCONS_00047634-exon-scaffold_133-1510915933:209858..210807 | TCONS_00047634-exon-scaffold_133-1510915933:209858..210807 | Clytia hemisphaerica | exon |
| TCONS_00047634-exon-scaffold_133-1575043694:209858..210807 | TCONS_00047634-exon-scaffold_133-1575043694:209858..210807 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_133 | supercontig | scaffold_133:207012..210807 + |
Blast
The following BLAST results are available for this feature:
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