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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047639 ID=TCONS_00047639|Name=TCONS_00047639|organism=Clytia hemisphaerica|type=transcript|length=2506bp
TAAGGAAGAAGCAGTATTTTATACTAGtgaaaaaaacatgtccttaaaTT
CTGCCTATTTTTCAATAATTGGTATATTTTATTTGCAGGGTTGAAGCAGA
ATCAGAACCTGAAGCTGTTCCAGAATGTTGCATCATTTCTGTAGAATCTG
GTAAAATAAAAtgctgtaaaaataaaaacgtcATTGACTCTGGAAAATCA
GAATTGCTTCTTGGAGTTATAGAAAAAGTTGCTGGTCAAAAGCAATTGAC
AAGACATGAAGAACGTTTTGGGATCACTTCTTTCATATATCGTTCAAGAA
GACCATTTCATCCAGGAAAATTAATGGATTTGTTTTTTGAACCCTTCTTC
ATTATGCGACATGAAGAAGAAGATAGTGAACTTGGTCAACTTCAAAAGCT
GGCTGCTGATAAACAAAGACTTCGTACAAAAACAATAGGAGAACTGCTAC
GTGCCAAAGGCTTCCTTTGGATTGCAACATCCCATGATTTGCTGGGTGGA
TTTCAACAAGCTGGAAATGTTATTAGAGTTGAAGCAGAAGGACCATGGAT
GTGTGACATTCGTGATTTATGGGAAGGAACGAAGGCTGAAGATCTTGTTA
TCAAAGACATGACCCAAGAAAATGGAGAAGAATATCAGTATGGTGATCAT
CGACAGGAACTGGTTTTCATTGGAATGAATCTAAATCACACTGTCATTCA
AAACCTTCTTGATATGTGCTTGCTGGATGACGAAGAAATGAAGTTAGGAC
CTGATGGATGGTTGAAGACTATGGAAAGTGATGATCGAATCAAATTGACT
TTAGATTTTGATGACGGCAATGATGAGGATTATGAAGATGAAGATTCTGT
TAATGGGAATgaagaaagataaaaagtgCTCCTTGAGATTTTGTCTTTCT
TATAATTATAGTTACAATGATTACTGGGTGCGCTTGGATTTTCTGCAATC
TCGTATATGATCTTTTGATACCTTATAgactattctcaacttcagttgag
ctacaatctgataatgtctgtgtgtgtgtgtgtgtctgtctgttactaaa
actttagggcaggctggagacttcaaaaatgatctgatttggctgaaatt
ttgcacctTGATCCTTTGGTGAATccctgggggtatttttttcattttta
gaaatttttcaattttaagggcgtggtcacaatatttcttcaaaacgagg
ctaaaacttaagggcaggctggagacttcaaaaatggtcagatttggctg
aaactttgcacacttgatccttgggtgaatccctgggggtgtatttttca
tttttagaaatttttcaattttaagggcGTAGTCACAATATttctccaaa
acgaggctaaaactttggggcagcctggagacttcaaaaattgtcggatt
tggctgaaattgtgcacacttgttccttgagtAAATACctgggggtgctt
ttttcattttttgaaaattttcaattttaagggGGTGGTCACAatatttc
gccaaaacgaggctaaaaccttggggcaggttggagacttcaaatatggt
cggatttggctgaaattttgctcaCTTGTTCCTTGAGTGAATACCTGggg
atgttttttattttttgaaatttttcaattttaagggcgtggtcacgata
cttcgccaaaacaaggctaaaactttggggcaggctggagacttcaaata
tggtcggatttggctgaaatttggcaccctTGTtcctttggaaaatattt
taggatgatttttttattcttcaaaaattatcatttttggggcctgggat
gagtttttagcctaaacgaggctaaaacctatTTAAGAAATGCTAATTTt
ccttaagccattaagtttacaattgggcctacgaatggaatgatttcaaa
gatactgaagttgagccagtgcggttagcacgttcgacagttgtTAAATA
TTGAATGAAACTGAAAAGGTTAATAATGAATTGAATAGACATTTGGTCAT
AACATATGACTTGGAAACTTTCATAATACTTACTAGAATTGATTTGAATG
AAGGATtcgtcaaaaaagttttatatttgACCAGCTTTATTTATAAGTCG
TCgaatcaaaataagaaagccttaagtccattttttcaaaaattgagtta
tgaccataccggtgctttacaccccattttttatcgaatttttgacttaa
atccatcaaaaaccaacctaaagtggcctaattttaagttttttgaaaaa
taagaatttttatttttgaaattctctcAAGTTAAGAAAGTCTTAAGTCC
ATTGTCATTTTAGTTGGACTTTAGGACCTTTTAGATTAAGGTTTTGGTTA
AAgagttcaaaaaagttaagaaagtttAAAGCAAGAAAGTCTTAAGTCCA
CTTTGGAGTTAAGACACTTTTTcactggaaatttttcaaattttcagttt
taatcaaggaaatttacatagaaaaaaaggtttaagTCCATTCTCGAAAA
ACATGC Run BLAST on NCBI protein sequence of TCONS_00047639-protein >TCONS_00047639-protein ID=TCONS_00047639-protein|Name=TCONS_00047639-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MDLFFEPFFIMRHEEEDSELGQLQKLAADKQRLRTKTIGELLRAKGFLWI
ATSHDLLGGFQQAGNVIRVEAEGPWMCDIRDLWEGTKAEDLVIKDMTQEN
GEEYQYGDHRQELVFIGMNLNHTVIQNLLDMCLLDDEEMKLGPDGWLKTM
ESDDRIKLTLDFDDGNDEDYEDEDSVNGNEER Run BLAST on NCBI transcript from alignment at scaffold_133:303886..306881+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047639 ID=TCONS_00047639|Name=TCONS_00047639|organism=Clytia hemisphaerica|type=transcript|length=2996bp|location=Sequence derived from alignment at scaffold_133:303886..306881+ (Clytia hemisphaerica)
TAAGGAAGAAGCAGTATTTTATACTAGtgaaaaaaacatgtccttaaaTT
CTGCCTATTTTTCAATAATTGGTATATTTTATTTGCAGGGTTGAAGCAGA
ATCAGAACCTGAAGCTGTTCCAGAATGTTGCATCATTTCTGTAGAATCTG
GTAAAATAAAAtgctgtaaaaataaaaacgtcATTGACTCTGGAAAATCA
GAATTGCTTCTTGGAGTTATAGAAAAAGTTGCTGGTCAAAAGCAATTGAC
AAGACATGAAGAACGTTTTGGGATCACTTCTTTCATATATCGTTCAAGAA
GACCATTTCATCCAGGAAAATTAATGGATTTGTTTTTTGAACCCTTCTTC
ATTATGCGACATGAAGAAGAAGATAGTGAACTTGGTCAACTTCAAAAGCT
GGCTGCTGATAAACAAAGACTTCGTACAAAAACAATAGGAGAACTGCTAC
GTGCCAAAGGCTTCCTTTGGATTGCAACATCCCATGATTTGCTGGGTGGA
TTTCAACAAGCTGGAAATGTTATTAGGCAAGTCTAGATAAATTCTTTTTG
AACTTAACAAGGTTAACTAAGgcaagaccaatttaatttgttgttctacg
ggcgctACCAACCCAGTATTTCCTGTGCCACAAATTTCCAATTATAAGTA
gtcattgaaaaaatttacacttaaaaaaaaagttgaaaaagaatCTAGTA
TCATGAATTCTATgcacaaaagattttattacaaactccatcaaagatga
atgatgaattttcgatcaagattatttgaaaatattacttaaagtcttcc
ttgattaatgaaaatcttatttttacttaaccgaccgaccgactcatatt
gtgctaacgatctgcccgtagaacaacaaatttaattggtctcgcctaat
atGCATGTtgtaaaaatgtcacatactgtTACATAATTAAGTTATTTGAA
ATTAtatgaaattcaaaatatattgtGGTGACTAAATTAGAATCATTATA
TTACATATTGATTTAGAGTTGAAGCAGAAGGACCATGGATGTGTGACATT
CGTGATTTATGGGAAGGAACGAAGGCTGAAGATCTTGTTATCAAAGACAT
GACCCAAGAAAATGGAGAAGAATATCAGTATGGTGATCATCGACAGGAAC
TGGTTTTCATTGGAATGAATCTAAATCACACTGTCATTCAAAACCTTCTT
GATATGTGCTTGCTGGATGACGAAGAAATGAAGTTAGGACCTGATGGATG
GTTGAAGACTATGGAAAGTGATGATCGAATCAAATTGACTTTAGATTTTG
ATGACGGCAATGATGAGGATTATGAAGATGAAGATTCTGTTAATGGGAAT
gaagaaagataaaaagtgCTCCTTGAGATTTTGTCTTTCTTATAATTATA
GTTACAATGATTACTGGGTGCGCTTGGATTTTCTGCAATCTCGTATATGA
TCTTTTGATACCTTATAgactattctcaacttcagttgagctacaatctg
ataatgtctgtgtgtgtgtgtgtgtctgtctgttactaaaactttagggc
aggctggagacttcaaaaatgatctgatttggctgaaattttgcacctTG
ATCCTTTGGTGAATccctgggggtatttttttcatttttagaaatttttc
aattttaagggcgtggtcacaatatttcttcaaaacgaggctaaaactta
agggcaggctggagacttcaaaaatggtcagatttggctgaaactttgca
cacttgatccttgggtgaatccctgggggtgtatttttcatttttagaaa
tttttcaattttaagggcGTAGTCACAATATttctccaaaacgaggctaa
aactttggggcagcctggagacttcaaaaattgtcggatttggctgaaat
tgtgcacacttgttccttgagtAAATACctgggggtgcttttttcatttt
ttgaaaattttcaattttaagggGGTGGTCACAatatttcgccaaaacga
ggctaaaaccttggggcaggttggagacttcaaatatggtcggatttggc
tgaaattttgctcaCTTGTTCCTTGAGTGAATACCTGgggatgtttttta
ttttttgaaatttttcaattttaagggcgtggtcacgatacttcgccaaa
acaaggctaaaactttggggcaggctggagacttcaaatatggtcggatt
tggctgaaatttggcaccctTGTtcctttggaaaatattttaggatgatt
tttttattcttcaaaaattatcatttttggggcctgggatgagtttttag
cctaaacgaggctaaaacctatTTAAGAAATGCTAATTTtccttaagcca
ttaagtttacaattgggcctacgaatggaatgatttcaaagatactgaag
ttgagccagtgcggttagcacgttcgacagttgtTAAATATTGAATGAAA
CTGAAAAGGTTAATAATGAATTGAATAGACATTTGGTCATAACATATGAC
TTGGAAACTTTCATAATACTTACTAGAATTGATTTGAATGAAGGATtcgt
caaaaaagttttatatttgACCAGCTTTATTTATAAGTCGTCgaatcaaa
ataagaaagccttaagtccattttttcaaaaattgagttatgaccatacc
ggtgctttacaccccattttttatcgaatttttgacttaaatccatcaaa
aaccaacctaaagtggcctaattttaagttttttgaaaaataagaatttt
tatttttgaaattctctcAAGTTAAGAAAGTCTTAAGTCCATTGTCATTT
TAGTTGGACTTTAGGACCTTTTAGATTAAGGTTTTGGTTAAAgagttcaa
aaaagttaagaaagtttAAAGCAAGAAAGTCTTAAGTCCACTTTGGAGTT
AAGACACTTTTTcactggaaatttttcaaattttcagttttaatcaagga
aatttacatagaaaaaaaggtttaagTCCATTCTCGAAAAACATGC Coding sequence (CDS) from alignment at scaffold_133:303886..306881+ >TCONS_00047639 ID=TCONS_00047639|Name=TCONS_00047639|organism=Clytia hemisphaerica|type=CDS|length=1098bp|location=Sequence derived from alignment at scaffold_133:303886..306881+ (Clytia hemisphaerica)
ATGGATTTGTTTTTTGAACCCTTCTTCATTATGCGACATGAAGAAGAAGA
TAGTGAACTTGGTCAACTTCAAAAGCTGGCTGCTGATAAACAAAGACTTC
GTACAAAAACAATAGGAGAACTGCTACGTGCCAAAGGCTTCCTTTGGATT
GCAACATCCCATGATTTGCTGGGTGGATTTCAACAAGCTGGAAATGTTAT
TAGAGTTGAAGCAGAAGGACCATGGATGTGTGACATTCGTGATTTATGGG
AAGGAACGAAGGCTGAAGATCTTGTTATCAAAGACATGACCCAAGAAAAT
GGAGAAGAATATCAGTATGGTGATCATCGACAGGAACTGGTTTTCATTGG
AATGAATCTAAATCACACTGTCATTCAAAACCTTCTTGATATGTGCTTGC
TGGATGACGAAGAAATGAAGTTAGGACCTGATGGATGGTTGAAGACTATG
GAAAGTGATGATCGAATCAAATTGACTTTAGATTTTGATGACGGCAATGA
TGAGGATTATGAAGATGAAGATTCTGTTAATGGGAATgaagaaagataaA
TGGATTTGTTTTTTGAACCCTTCTTCATTATGCGACATGAAGAAGAAGAT
AGTGAACTTGGTCAACTTCAAAAGCTGGCTGCTGATAAACAAAGACTTCG
TACAAAAACAATAGGAGAACTGCTACGTGCCAAAGGCTTCCTTTGGATTG
CAACATCCCATGATTTGCTGGGTGGATTTCAACAAGCTGGAAATGTTATT
AGAGTTGAAGCAGAAGGACCATGGATGTGTGACATTCGTGATTTATGGGA
AGGAACGAAGGCTGAAGATCTTGTTATCAAAGACATGACCCAAGAAAATG
GAGAAGAATATCAGTATGGTGATCATCGACAGGAACTGGTTTTCATTGGA
ATGAATCTAAATCACACTGTCATTCAAAACCTTCTTGATATGTGCTTGCT
GGATGACGAAGAAATGAAGTTAGGACCTGATGGATGGTTGAAGACTATGG
AAAGTGATGATCGAATCAAATTGACTTTAGATTTTGATGACGGCAATGAT
GAGGATTATGAAGATGAAGATTCTGTTAATGGGAATgaagaaagataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047639-exon-scaffold_133-1491911889:303886..304411 | TCONS_00047639-exon-scaffold_133-1491911889:303886..304411 | Clytia hemisphaerica | exon |
| TCONS_00047639-exon-scaffold_133-1510915933:303886..304411 | TCONS_00047639-exon-scaffold_133-1510915933:303886..304411 | Clytia hemisphaerica | exon |
| TCONS_00047639-exon-scaffold_133-1575043694:303886..304411 | TCONS_00047639-exon-scaffold_133-1575043694:303886..304411 | Clytia hemisphaerica | exon |
| TCONS_00047639-exon-scaffold_133-1491911889:304902..306881 | TCONS_00047639-exon-scaffold_133-1491911889:304902..306881 | Clytia hemisphaerica | exon |
| TCONS_00047639-exon-scaffold_133-1510915933:304902..306881 | TCONS_00047639-exon-scaffold_133-1510915933:304902..306881 | Clytia hemisphaerica | exon |
| TCONS_00047639-exon-scaffold_133-1575043694:304902..306881 | TCONS_00047639-exon-scaffold_133-1575043694:304902..306881 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_133 | supercontig | scaffold_133:303886..306881 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR011629 | Cbl_biosynth_CobW-like_C |
Blast
The following BLAST results are available for this feature:
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