TCONS_00047640 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047640
Unique NameTCONS_00047640
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2022

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047640 ID=TCONS_00047640|Name=TCONS_00047640|organism=Clytia hemisphaerica|type=transcript|length=2022bp
tattttcttcaacAATGTATTTTAAACTAGCATTCACAACTGTATTCACC
TGTTTGTTTACATATTTCTTAGGATAAAAAGATAAAGAGATTTAAAAATA
CCAAAGAAAAACAATTGTGCTTTATCAAACATGGTTGTAGAAGTTGATCA
AAAGAATGTCAAAGCTGCATTAAAAGATGATGTCAAGGAGGCTGACAAGA
TCACANGTTGATCAAAAGAATGTCAAAGCTGCATTAAAAGATGATGTCAA
GGAGGTTGCCAAAATTACCAAGATGAGCATGACCATGAAGAGGAACATCC
AGAAGGACCAGAGCTGGGTGAAGTTGCAAGGCTTGATACATGTGTTACTG
TTATTGATGCAGCTGAATTTTACAATAATCTTGAAAGCATGAAAATGTAC
GAGGAAGGGGACATGGTTGGAACGATTTCAGAACTTTTGATGGAACAAGT
GGAGTATTCCAACGTTGTCATCCTCAATAAACAAGATCTCATAAATGATA
AGCAAAGAGCTGATATTCTAGACcgaattaaaattttaaatccaaGAGCG
AAGGTGCTTTCTTCACTTCAAAGTAAAGTAGATGTCAAGGAGATATTAAA
TACAAATTTGTACAACAAAGTGGAGATGGATGAAGACTCAGTGATGTGCT
CTGCAACCAGaattaaaGCAGAATCGAATGAGGTTGAACCAGAATGTTGC
GTTAAATCTGTTGAATCGGGTAAAAAGAAATGTTGTAAAAGTAAAAAGGC
TGAGAACAAGCAAATTATTGATTCCGGAAAATCACAACTATTTCTTGGAG
TGGTGGACAAAATTGCTGGTCAGAAACAACTAACCAGGCACGAAGAACGC
TTTGGGATCACTTCCTTTGTTTATCGGTCAAGAAGGCCATTTCATTCAGG
ACGACTTTGTGGATTATTTTTCGAACCGTTCTTCATCATGAGatacgaag
aagaagaaaatgagttGGATGAGTTGCAAAAGAAAGCAGCAAATAAACAA
AAACGTAGAGTTAAAAAAATTGGTGAACTATTACGTGCCAAAGGCTTCAT
GTGGCTTGCAACTTCCCATGAAATCTTGGGTGGTTTTCAACAAGCTGGAA
ATGTTGTGAGGGTAGAAGCAGAAGGGAATTGGATGGTTGATTGTCGTGAC
CAGTGGGAAGgggaagaaggagaagaaagaGTTCTGAAAGATATGACGAA
CGAGAAAGGTGAAGAATACGAATACGGTGATCGCCGTCAAGAATTAGTTT
TCATCGGAATGACTTTGAAATATCAAACCATACAAAAAATATTAGATGAA
TGTCTTTTGACTGACGATGAAATGAAGCTAGGACCGGAGAAATGGTTGGA
ACAGTTTGGCGAAGATGCTCCGTTGAGATTGTTCTTAGTAGAGGATGAAG
AAGAGGACAGTGAAGAGGACGAAGAAGAAGATGGAGAGGGAACTGATGAT
GAGGAGACTGAAAACGAAGATGAAGAGAAAAGTGAAATGGACGAGAAGAG
CTCAGAAAAGACGACGGCTCCCGGTAAAAAGCGAAAGGTCAAGAAAGATG
CGGAGAAtaatgatgatgaagaaaagaaaaaagaaatcccAGCCAAGAGA
AAGAAGAGCAAAAAAGACCTCGATAATGAATAAAGAAGAAACTAAACCTG
ACAAAGAAATCCCAGTCAAGAGAAATAAGAGCAAGAAACATTGATTTCTG
GGGACCACTTGGATAAAGCTTTGATAAACATGCTTTGGGATTTGTAAAGA
TAATTTTCACACATTTTGTACATAGTTTGGATAACACCATTTTTTTTATC
GTGTCAGatttaattcttttttgatatttctttctACCAATGTCTCATTA
GAATAAAATCCTCTCTTGCTATTTACCTCGTCGGATACTAAATGTAatca
agaattaaaaaaaaaaccaaagaTGCATTTGAAAAAGACTACAANattta
attcttttttgatatttctttctACCAATGTCTCATTAGAATAAAATCCT
CTCTTGCTATTTACCTCGTCGG
Run BLAST on NCBI

transcript from alignment at scaffold_133:307485..314425+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047640 ID=TCONS_00047640|Name=TCONS_00047640|organism=Clytia hemisphaerica|type=transcript|length=6941bp|location=Sequence derived from alignment at scaffold_133:307485..314425+ (Clytia hemisphaerica)
tattttcttcaacAATGTATTTTAAACTAGCATTCACAACTGTATTCACC TGTTTGTTTACATATTTCTTAGGATAAAAAGATAAAGAGATTTAAAAATA CCAAAGAAAAACAATTGTGCTTTATCAAACATGGTTGTAGAAGTTGATCA AAAGAATGTCAAAGCTGCATTAAAAGATGATGTCAAGGAGGCTGACAAGA TCACANGTTGATCAAAAGAATGTCAAAGCTGCATTAAAAGATGATGTCAA GGAGGTTGCCAAAATTACCAAGGTTCGTTTATAAACTGCTTttgtttttt actttattttttattatccaTCTACAATCCCCACcgtaatatttggcaca aaaggggaattcccccAAATTTGAAAACCGCAAGTAattttttaagtgct ttaaagtacggtttgaaagtagagttttaactctgaattttaacacgaga cttaagagttaggaccttaggatctcaggatctaaaagttcaaaaatgtt ccaataaggctgagaatatagcctggaagccacttaatccctcccaaatc gaaaaatccaatgaaacaaagtggaagtactgaaactgcaattctcgctc gatctttaaattctgaaaacgttaaaatacccaaaagtgtcaatatattt tggcgCCGATTGTACTAGACAAATAGATAAACGCTAGCCCAATTCACCCA AAAGTTTTCCTTTCAAATAATTATCACAagataaaacaatgcaatgaaaG CACTGGAtaacatattatttaaaaatgatttttagcaATAGGATCATGAG AGTCTTATCCAATTATATACCATATTTCTAATATAGAAGCAGCCGGATCC AAAAGATCTTTTACCCGTTTCATTGCTCTGTGGCTTTCTGGGAGCGGGTA AAACAACCCTTCTTAAGCACATCTTGGAAACCAAACACAATGAAGAGGGC TTTAGATGTGCTGTTATCGTCAATGATATGGCAACTCTGAATATCGACAA AAGTTTGATCGATCAGTCAGCCCTTGTTCAAAGTGACGAAGTCATTGCAA TGCAAAATGGTTGTTTTTGCTGCACTCTTCAAAATGACCTTGTGGATCAA ATTGTCTCTTTGGCACAAAAGAATATATTTGATTACATGTTGATCGAGGC ATCAGGAGTTTCGGAACCAGCCCAAATCGCTCCACTTTTTGATCTTTGTG AAGATGAGCATGACCATGAAGAGGAACATCCAGAAGGACCAGAGCTGGGT GAAGTTGCAAGGCTTGATACATGTGTTACTGTTATTGATGCAGCTGAATT TTACAATAATCTTGAAAGCATGAAAATGTACGAGGAAGGGGACATGGTTG GTAGGTTTCACTGATTTATGCCACAGATATCTTATTAACGTATCTATACG AGTAGCATACTTGCAATGGCAGTCAAGGTGGGGGGGGCGATGGTTGGTGT AATAATAAAGAGCTATGTTTTttgcaaacttaatttttgaatttggaaTT ATGTGTCAAAATATTTGGCTATGTAGATAGAATAATATACCATCTTTCAA TTTTAGGAACGATTTCAGAACTTTTGATGGAACAAGTGGAGTATTCCAAC GTTGTCATCCTCAATAAACAAGATCTCATAAATGATAAGCAAAGAGCTGA TATTCTAGACcgaattaaaattttaaatccaaGAGCGAAGGTGCTTTCTT CACTTCAAAGTAAAGTAGATGTCAAGGAGATATTAAATACAAATTTGTAC AACAAAGTGGAGATGGATGAAGACTCAGTGATGTGCTCTGCAACCAGGTA ACATATCTCTTATCTTTTATATCTTAGCATCAGGGAAGCATCTCTTATGA AGAAAGGAGGCAAGATCTTATCATTTTGAACGAGAATTTCTCAAACTCGT AACACTACCATCTTACAGTATTAATGTGTTGGGTAttgtaaaactttttt gaagaagaatattttacttttagaaCTAAACCCAATTATTTTGAGAAGAC GTATTGAAATTCCCAATCTTAGAACTGTCCCTAATTTCCCAATAGGATCT GATTTCACTAGAAAATTTTGCAGATCTTTCGAATGAGTATTGTGAAAACT TTTCCCTTTTGCTATTGAGACTCGCTTTTATTTTGGAGAGGTCGTCAGGC TTTAGATTGGAGTTTTTTGGacattttacatatttttttagaattaaaGC AGAATCGAATGAGGTTGAACCAGAATGTTGCGTTAAATCTGTTGAATCGG GTAAAAAGAAATGTTGTAAAAGTAAAAAGGCTGAGAACAAGCAAATTATT GATTCCGGAAAATCACAACTATTTCTTGGAGTGGTGGACAAAATTGCTGG TCAGAAACAACTAACCAGGCACGAAGAACGCTTTGGGATCACTTCCTTTG TTTATCGGTCAAGAAGGCCATTTCATTCAGGACGACTTTGTGGATTATTT TTCGAACCGTTCTTCATCATGAGatacgaagaagaagaaaatgagttGGA TGAGTTGCAAAAGAAAGCAGCAAATAAACAAAAACGTAGAGTTAAAAAAA TTGGTGAACTATTACGTGCCAAAGGCTTCATGTGGCTTGCAACTTCCCAT GAAATCTTGGGTGGTTTTCAACAAGCTGGAAATGTTGTGAGGTAAGTTCA TCAAttctcttaaatattttcataaattattaaGAACAATGAATCTTTAC TTTGAATCTTGGGGAGGGGCGCTCGAGAGGGGCCTTTAAATCTCAAGATT GACTAGTGCTATGACCTTGAAACTTTGACCAGTGGTAGATATAGATAATT GAAGAtggtttgcaaaattttggttcGGCCACCTTTCTAgttagtatttt acagaccagaccaaacttgaccaaaatcatgtattgactgattgacttGT TCGATTTGACGGAAATTTGTTCATAAAGGCTGATTTGTCAAATAATAGAG ACTATTAACAGGAAAAGTTCGTTTCCATGAGTATTAGGGAATTtgcagac tggtctgtaaaatacatgcTGACCACTTGCGGGAACTCATGAACTGCAgg agcttttgacttgaaattttcaccagtgatagatattgaccatctaagac agtgtggtattttacagaccggtcggttttttacctaaaatgatCACTTT CGGCATAACCACTTGTCcgattttgctaaaattttgggTGCAAGCTTGTA TCATCAATACCTAACACTTTNGATATTGACCATCTAAGACAGtgtggtat tttacagaccggtcggttttttacctaaaatgatCACTTTCGGCATAACC ACTCACCCGATTTTGCTAAAGTTTTGGGTGCAAGCTTGTATCATTAATAC CTAAcacttgtcaaaatttcaatggCATTTTCCACTCACTAGATACAGTA TCCTAGGGCTGTTTAGGCAAAAAAGGGTAATTTTGGGCCACTCTGTAAAA TACACCATACCAACAGGTggcaaaaaaagtttaaagtgagAAAAAGCTAG AGGGGGtcctatttttgctattttcaataaatgatgacgtcatcaggtgg tggttacgaaattttcattaaagatGCTAATTCATATTCATATTTGTTGC CCACTTGCAAGATCTCAAGTcaattggataaatatttcaaaatttatcaa taaatttcgTTAGGCCCCTCCCAATTAGAAAAGTTCAAGTTAGCAAATAT AGAACGAACAAATACACCTATCAGAGGAATTatcagaatttttttgtttc tgataAATTTACAAGGAAATTCTTTTCTATGAGTGTAACGACTTCAGACA TTTTGACGTCTGTTCTTCCTGGTCATCTCCAACAACCCAGTACGCTCAAA AGCTAGGTAGGTGTTTTCGGttcaaacaaaagattttattctGTTTTTCA TTCTATAATAGGGTAGAAGCAGAAGGGAATTGGATGGTTGATTGTCGTGA CCAGTGGGAAGgggaagaaggagaagaaagaGTTCTGAAAGATATGACGA ACGAGAAAGGTGAAGAATACGAATACGGTGATCGCCGTCAAGAATTAGTT TTCATCGGAATGACTTTGAAATATCAAACCATACAAAAAATATTAGATGA ATGTCTTTTGACTGACGATGAAATGAAGCTAGGACCGGAGAAATGGTTGG AACAGTTTGGCGAAGATGCTCCGTTGAGATTGTTCTTAGTAGAGGATGAA GAAGgtgacatttttgtttttaatttataaaaaatcattCTTCTAGCTGT TTCTTTGGTGACTTTGTTGGCGGATCAACTGCTGTTTTTCCTTTTAATAC CACTATCTTTGTAGTCAAAAGGAACCCCCTCCTTCAATTATTTTTGTCCT AAAGTAAAAAGTCTAAGGGAAACCGATGTAGCGGATTATTTTAACTCCTT GTAAATGTCGGCCTCCCCAGTTAAGAATAAACTAGAAAATAATGACTCCC CTAGAGTAgaaatttcctaggaaatatcGACTCCCTTAGTAAATATTGGC TCCCTATAAAGAGGCTGAGAGAGTCGTGATGAAATAGTTTATAATGATCC CCGACCCCCAAGTAGACAAGAACTGGAGTCATTGCAGTGCTGTTCGATTC GGTTTTTTACGGAACTGACTTTTGTCGTTGGGACTCATTTTGGCGAAATT CCTTCATTCTCCAAGGGACTTAAAAGAGTCTTCAGAATGTGTGGTATTTT TGCATAACAGAATTTCACGTAATTTTCGGTTGACACGAAGTAAACTTTTA TTCCTCAAGAATGTTTACCAAAAATCTATAGTTAgctacaaccaatcagc tgttaggTCTATGGTGTGATgtcgaagacattgcagtgggtGCATATAAT GAATAGGAAtagtataaaattgttctttcattttGTTCGTTTGCAGAGGA CAGTGAAGAGGACGAAGAAGAAGATGGAGAGGGAACTGATGATGAGGAGA CTGAAAACGAAGATGAAGAGAAAAGGTAtactttttgtaaaatttgccaT TTGTCTTTTGCGGACCTACCTGGAGTTCCTATCAACTCCTAGTTAGTGAG TGAGTGAGTTGCACAAagacgtgtttttatagaaaaatgggccaaattca acatttttttataagcacacaatCACTACCAATTACTCagttattagctt ttctcgagattggctcattcattCTTTATGGTTTTTATGCACAAAcgtgc ataactataaaccctcgaatgtgacggagcatGTTTTTTATTCGGGATTT TATTTTATCTGGGATTTgtattccattgttttcaaatcagaaaattcagt ggggatggaaaaaatagcacaatattttgcagtcaGATTTTGgttatttg ataatttttttgtgagtACAAAAGttagaggataattttccacgagacga tattttggctcCAAGGCTTTTAGTATTCCCGTTTCGACCTGCgcatagtt tttttttgtttttatttcgtcAATGAAAATTATGTCAAGGGACAGGCAGT TTTCTTGAGATTTGGTTTTTAGTAGTCCCTATCTGGATTTTGCCGAATCG GtctattcagttttttttaaccTGTTTTATCATTTAATATAGTGAAATGG ACGAGAAGAGCTCAGAAAAGACGACGGCTCCCGGTAAAAAGCGAAAGGTC AAGAAAGATGCGGAGAAtaatgatgatgaagaaaagaaaaaagaaatccc AGCCAAGAGAAAGAAGAGCAAAAAAGACCTCGATAATGAATAAAGAAGAA ACTAAACCTGACAAAGAAATCCCAGTCAAGAGAAATAAGAGCAAGAAACA TTGATTTCTGGGTAGGTTAACTAAACATTCACAACTTGTGTATCAATGAG TTATTGATTGAGAAGTGTGGAGCTTGGCGCTTGGCACTATCAGTCATCGT CTATAGGCTGCATACAAGGGTGGATTAAGTTGTGTTCGATGAAATAGGGT TGAACGACACCAGGGGGGGTACaaaggcagggtactaacccatagccggg tggtggtgtctatttttgcatttcaaaaaagttagtacccgttACTACTT TAGGGGTGGGGGTGTGTATTTATCACTCTTCTAGCAAGTACAGGgtacta tttgggtactttttcacagagTTTTNtgtatttttcactcttctAGCAAG TACAGGgtactatttgggtactttttcacagagttttgctcctttttcaa taaaaaaagtagtcttttgtaatattttgatttttttcaaatatattttt ttttaattgagaaactttttttttaattgagaaacttttttttactcttt ttgatttttgtgaagacAAAACTTCCGAAATGGTCAAAAAGTGTGTTATT AAAATCAAAAGACAAAAGCCTCTGACTTAATCAATGATAGTTTGTTTGAA TTATCTGTCCAtttcagtcagaaaaactaACATAGTACCCCCCCCCTGAC GACACAAGTTTCTAGTTAAAAAAGGAATTGAAACtattttattcatgata ttcattacgtaatATTTTCCATGGAACCATCccagtttttgccagtagtg gttTCTTGGCTcgaatttctttgaattttcttGAGCACTTTGTAATTCAA TTTATTTCATTGTATTTCAGGGACCACTTGGATAAAGCTTTGATAAACAT GCTTTGGGATTTGTAAAGATAATTTTCACACATTTTGTACATAGTTTGGA TAACACCATTTTTTTTATCGTGTCAGatttaattcttttttgatatttct ttctACCAATGTCTCATTAGAATAAAATCCTCTCTTGCTATTTACCTCGT CGGATACTAAATGTAatcaagaattaaaaaaaaaaccaaagaTGCATTTG AAAAAGACTACAANatttaattcttttttgatatttctttctACCAATGT CTCATTAGAATAAAATCCTCTCTTGCTATTTACCTCGTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030343XLOC_030343Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047640-exon-scaffold_133-1491911889:307485..307756TCONS_00047640-exon-scaffold_133-1491911889:307485..307756Clytia hemisphaericaexon
TCONS_00047640-exon-scaffold_133-1510915933:307485..307756TCONS_00047640-exon-scaffold_133-1510915933:307485..307756Clytia hemisphaericaexon
TCONS_00047640-exon-scaffold_133-1575043694:307485..307756TCONS_00047640-exon-scaffold_133-1575043694:307485..307756Clytia hemisphaericaexon
TCONS_00047640-exon-scaffold_133-1491911889:308688..308834TCONS_00047640-exon-scaffold_133-1491911889:308688..308834Clytia hemisphaericaexon
TCONS_00047640-exon-scaffold_133-1510915933:308688..308834TCONS_00047640-exon-scaffold_133-1510915933:308688..308834Clytia hemisphaericaexon
TCONS_00047640-exon-scaffold_133-1575043694:308688..308834TCONS_00047640-exon-scaffold_133-1575043694:308688..308834Clytia hemisphaericaexon
TCONS_00047640-exon-scaffold_133-1491911889:309041..309281TCONS_00047640-exon-scaffold_133-1491911889:309041..309281Clytia hemisphaericaexon
TCONS_00047640-exon-scaffold_133-1510915933:309041..309281TCONS_00047640-exon-scaffold_133-1510915933:309041..309281Clytia hemisphaericaexon
TCONS_00047640-exon-scaffold_133-1575043694:309041..309281TCONS_00047640-exon-scaffold_133-1575043694:309041..309281Clytia hemisphaericaexon
TCONS_00047640-exon-scaffold_133-1491911889:309676..310125TCONS_00047640-exon-scaffold_133-1491911889:309676..310125Clytia hemisphaericaexon
TCONS_00047640-exon-scaffold_133-1510915933:309676..310125TCONS_00047640-exon-scaffold_133-1510915933:309676..310125Clytia hemisphaericaexon
TCONS_00047640-exon-scaffold_133-1575043694:309676..310125TCONS_00047640-exon-scaffold_133-1575043694:309676..310125Clytia hemisphaericaexon
TCONS_00047640-exon-scaffold_133-1491911889:311396..311688TCONS_00047640-exon-scaffold_133-1491911889:311396..311688Clytia hemisphaericaexon
TCONS_00047640-exon-scaffold_133-1510915933:311396..311688TCONS_00047640-exon-scaffold_133-1510915933:311396..311688Clytia hemisphaericaexon
TCONS_00047640-exon-scaffold_133-1575043694:311396..311688TCONS_00047640-exon-scaffold_133-1575043694:311396..311688Clytia hemisphaericaexon
TCONS_00047640-exon-scaffold_133-1491911889:312381..312459TCONS_00047640-exon-scaffold_133-1491911889:312381..312459Clytia hemisphaericaexon
TCONS_00047640-exon-scaffold_133-1510915933:312381..312459TCONS_00047640-exon-scaffold_133-1510915933:312381..312459Clytia hemisphaericaexon
TCONS_00047640-exon-scaffold_133-1575043694:312381..312459TCONS_00047640-exon-scaffold_133-1575043694:312381..312459Clytia hemisphaericaexon
TCONS_00047640-exon-scaffold_133-1491911889:313077..313295TCONS_00047640-exon-scaffold_133-1491911889:313077..313295Clytia hemisphaericaexon
TCONS_00047640-exon-scaffold_133-1510915933:313077..313295TCONS_00047640-exon-scaffold_133-1510915933:313077..313295Clytia hemisphaericaexon
TCONS_00047640-exon-scaffold_133-1575043694:313077..313295TCONS_00047640-exon-scaffold_133-1575043694:313077..313295Clytia hemisphaericaexon
TCONS_00047640-exon-scaffold_133-1491911889:314105..314425TCONS_00047640-exon-scaffold_133-1491911889:314105..314425Clytia hemisphaericaexon
TCONS_00047640-exon-scaffold_133-1510915933:314105..314425TCONS_00047640-exon-scaffold_133-1510915933:314105..314425Clytia hemisphaericaexon
TCONS_00047640-exon-scaffold_133-1575043694:314105..314425TCONS_00047640-exon-scaffold_133-1575043694:314105..314425Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:307485..314425 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.07249 4.878 5.8202 4.11831 11.6024 9.92498 11.7219 12.1058 3.97492 2.03919 4.40179 3.6175 3.44881 3.94005 4.02927 4.41045 1.75232 4.42203 2.0844 0.878316 3.61552 1.70484 5.68439 1.44328 6.40312 8.62429 0.752646 2.30835 2.87579 1.14506
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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