TCONS_00047641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047641
Unique NameTCONS_00047641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2821

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047641 ID=TCONS_00047641|Name=TCONS_00047641|organism=Clytia hemisphaerica|type=transcript|length=2821bp
TTAGGATAAAAAGATAAAGAGATTTAAAAATACCAAAGAAAAACAATTGT
GCTTTATCAAACATGGTTGTAGAAGTTGATCAAAAGAATGTCAAAGCTGC
ATTAAAAGATGATGTCAAGGAGGTTGCCAAAATTACCAAGGTTCGTTTAT
AAACTGCTTttgttttttactttattttttattatccaTCTACAATCCCC
ACcgtaatatttggcacaaaaggggaattcccccAAATTTGAAAACCGCA
AGTAattttttaagtgctttaaagtacggtttgaaagtagagttttaact
ctgaattttaacacgagacttaagagttaggaccttaggatctcaggatc
taaaagttcaaaaatgttccaataaggctgagaatatagcctggaagcca
cttaatccctcccaaatcgaaaaatccaatgaaacaaagtggaagtactg
aaactgcaattctcgctcgatctttaaattctgaaaacgttaaaataccc
aaaagtgtcaatatattttggcgCCGATTGTACTAGACAAATAGATAAAC
GCTAGCCCAATTCACCCAAAAGTTTTCCTTTCAAATAATTATCACAagat
aaaacaatgcaatgaaaGCACTGGAtaacatattatttaaaaatgatttt
tagcaATAGGATCATGAGAGTCTTATCCAATTATATACCATATTTCTAAT
ATAGAAGCAGCCGGATCCAAAAGATCTTTTACCCGTTTCATTGCTCTGTG
GCTTTCTGGGAGCGGGTAAAACAACCCTTCTTAAGCACATCTTGGAAACC
AAACACAATGAAGAGGGCTTTAGATGTGCTGTTATCGTCAATGATATGGC
AACTCTGAATATCGACAAAAGTTTGATCGATCAGTCAGCCCTTGTTCAAA
GTGACGAAGTCATTGCAATGCAAAATGGTTGTTTTTGCTGCACTCTTCAA
AATGACCTTGTGGATCAAATTGTCTCTTTGGCACAAAAGAATATATTTGA
TTACATGTTGATCGAGGCATCAGGAGTTTCGGAACCAGCCCAAATCGCTC
CACTTTTTGATCTTTGTGAAGATGAGCATGACCATGAAGAGGAACATCCA
GAAGGACCAGAGCTGGGTGAAGTTGCAAGGCTTGATACATGTGTTACTGT
TATTGATGCAGCTGAATTTTACAATAATCTTGAAAGCATGAAAATGTACG
AGGAAGGGGACATGGTTGGAACGATTTCAGAACTTTTGATGGAACAAGTG
GAGTATTCCAACGTTGTCATCCTCAATAAACAAGATCTCATAAATGATAA
GCAAAGAGCTGATATTCTAGACcgaattaaaattttaaatccaaGAGCGA
AGGTGCTTTCTTCACTTCAAAGTAAAGTAGATGTCAAGGAGATATTAAAT
ACAAATTTGTACAACAAAGTGGAGATGGATGAAGACTCAGTGATGTGCTC
TGCAACCAGaattaaaGCAGAATCGAATGAGGTTGAACCAGAATGTTGCG
TTAAATCTGTTGAATCGGGTAAAAAGAAATGTTGTAAAAGTAAAAAGGCT
GAGAACAAGCAAATTATTGATTCCGGAAAATCACAACTATTTCTTGGAGT
GGTGGACAAAATTGCTGGTCAGAAACAACTAACCAGGCACGAAGAACGCT
TTGGGATCACTTCCTTTGTTTATCGGTCAAGAAGGCCATTTCATTCAGGA
CGACTTTGTGGATTATTTTTCGAACCGTTCTTCATCATGAGatacgaaga
agaagaaaatgagttGGATGAGTTGCAAAAGAAAGCAGCAAATAAACAAA
AACGTAGAGTTAAAAAAATTGGTGAACTATTACGTGCCAAAGGCTTCATG
TGGCTTGCAACTTCCCATGAAATCTTGGGTGGTTTTCAACAAGCTGGAAA
TGTTGTGAGGGTAGAAGCAGAAGGGAATTGGATGGTTGATTGTCGTGACC
AGTGGGAAGgggaagaaggagaagaaagaGTTCTGAAAGATATGACGAAC
GAGAAAGGTGAAGAATACGAATACGGTGATCGCCGTCAAGAATTAGTTTT
CATCGGAATGACTTTGAAATATCAAACCATACAAAAAATATTAGATGAAT
GTCTTTTGACTGACGATGAAATGAAGCTAGGACCGGAGAAATGGTTGGAA
CAGTTTGGCGAAGATGCTCCGTTGAGATTGTTCTTAGTAGAGGATGAAGA
AGAGGACAGTGAAGAGGACGAAGAAGAAGATGGAGAGGGAACTGATGATG
AGGAGACTGAAAACGAAGATGAAGAGAAAAGTGAAATGGACGAGAAGAGC
TCAGAAAAGACGACGGCTCCCGGTAAAAAGCGAAAGGTCAAGAAAGATGC
GGAGAAtaatgatgatgaagaaaagaaaaaagaaatcccAGCCAAGAGAA
AGAAGAGCAAAAAAGACCTCGATAATGAATAAAGAAGAAACTAAACCTGA
CAAAGAAATCCCAGTCAAGAGAAATAAGAGCAAGAAACATTGATTTCTGG
GGACCACTTGGATAAAGCTTTGATAAACATGCTTTGGGATTTGTAAAGAT
AATTTTCACACATTTTGTACATAGTTTGGATAACACCATTTTTTTTATCG
TGTCAGatttaattcttttttgatatttctttctACCAATGTCTCATTAG
AATAAAATCCTCTCTTGCTATTTACCTCGTCGGATACTAAATGTAatcaa
gaattaaaaaaaaaaccaaagaTGCATTTGAAAAAGACTACAANatttaa
ttcttttttgatatttctttctACCAATGTCTCATTAGAATAAAATCCTC
TCTTGCTATTTACCTCGTCGG
Run BLAST on NCBI

transcript from alignment at scaffold_133:307553..314425+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047641 ID=TCONS_00047641|Name=TCONS_00047641|organism=Clytia hemisphaerica|type=transcript|length=6873bp|location=Sequence derived from alignment at scaffold_133:307553..314425+ (Clytia hemisphaerica)
TTAGGATAAAAAGATAAAGAGATTTAAAAATACCAAAGAAAAACAATTGT
GCTTTATCAAACATGGTTGTAGAAGTTGATCAAAAGAATGTCAAAGCTGC
ATTAAAAGATGATGTCAAGGAGGCTGACAAGATCACANGTTGATCAAAAG
AATGTCAAAGCTGCATTAAAAGATGATGTCAAGGAGGTTGCCAAAATTAC
CAAGGTTCGTTTATAAACTGCTTttgttttttactttattttttattatc
caTCTACAATCCCCACcgtaatatttggcacaaaaggggaattcccccAA
ATTTGAAAACCGCAAGTAattttttaagtgctttaaagtacggtttgaaa
gtagagttttaactctgaattttaacacgagacttaagagttaggacctt
aggatctcaggatctaaaagttcaaaaatgttccaataaggctgagaata
tagcctggaagccacttaatccctcccaaatcgaaaaatccaatgaaaca
aagtggaagtactgaaactgcaattctcgctcgatctttaaattctgaaa
acgttaaaatacccaaaagtgtcaatatattttggcgCCGATTGTACTAG
ACAAATAGATAAACGCTAGCCCAATTCACCCAAAAGTTTTCCTTTCAAAT
AATTATCACAagataaaacaatgcaatgaaaGCACTGGAtaacatattat
ttaaaaatgatttttagcaATAGGATCATGAGAGTCTTATCCAATTATAT
ACCATATTTCTAATATAGAAGCAGCCGGATCCAAAAGATCTTTTACCCGT
TTCATTGCTCTGTGGCTTTCTGGGAGCGGGTAAAACAACCCTTCTTAAGC
ACATCTTGGAAACCAAACACAATGAAGAGGGCTTTAGATGTGCTGTTATC
GTCAATGATATGGCAACTCTGAATATCGACAAAAGTTTGATCGATCAGTC
AGCCCTTGTTCAAAGTGACGAAGTCATTGCAATGCAAAATGGTTGTTTTT
GCTGCACTCTTCAAAATGACCTTGTGGATCAAATTGTCTCTTTGGCACAA
AAGAATATATTTGATTACATGTTGATCGAGGCATCAGGAGTTTCGGAACC
AGCCCAAATCGCTCCACTTTTTGATCTTTGTGAAGATGAGCATGACCATG
AAGAGGAACATCCAGAAGGACCAGAGCTGGGTGAAGTTGCAAGGCTTGAT
ACATGTGTTACTGTTATTGATGCAGCTGAATTTTACAATAATCTTGAAAG
CATGAAAATGTACGAGGAAGGGGACATGGTTGGTAGGTTTCACTGATTTA
TGCCACAGATATCTTATTAACGTATCTATACGAGTAGCATACTTGCAATG
GCAGTCAAGGTGGGGGGGGCGATGGTTGGTGTAATAATAAAGAGCTATGT
TTTttgcaaacttaatttttgaatttggaaTTATGTGTCAAAATATTTGG
CTATGTAGATAGAATAATATACCATCTTTCAATTTTAGGAACGATTTCAG
AACTTTTGATGGAACAAGTGGAGTATTCCAACGTTGTCATCCTCAATAAA
CAAGATCTCATAAATGATAAGCAAAGAGCTGATATTCTAGACcgaattaa
aattttaaatccaaGAGCGAAGGTGCTTTCTTCACTTCAAAGTAAAGTAG
ATGTCAAGGAGATATTAAATACAAATTTGTACAACAAAGTGGAGATGGAT
GAAGACTCAGTGATGTGCTCTGCAACCAGGTAACATATCTCTTATCTTTT
ATATCTTAGCATCAGGGAAGCATCTCTTATGAAGAAAGGAGGCAAGATCT
TATCATTTTGAACGAGAATTTCTCAAACTCGTAACACTACCATCTTACAG
TATTAATGTGTTGGGTAttgtaaaacttttttgaagaagaatattttact
tttagaaCTAAACCCAATTATTTTGAGAAGACGTATTGAAATTCCCAATC
TTAGAACTGTCCCTAATTTCCCAATAGGATCTGATTTCACTAGAAAATTT
TGCAGATCTTTCGAATGAGTATTGTGAAAACTTTTCCCTTTTGCTATTGA
GACTCGCTTTTATTTTGGAGAGGTCGTCAGGCTTTAGATTGGAGTTTTTT
GGacattttacatatttttttagaattaaaGCAGAATCGAATGAGGTTGA
ACCAGAATGTTGCGTTAAATCTGTTGAATCGGGTAAAAAGAAATGTTGTA
AAAGTAAAAAGGCTGAGAACAAGCAAATTATTGATTCCGGAAAATCACAA
CTATTTCTTGGAGTGGTGGACAAAATTGCTGGTCAGAAACAACTAACCAG
GCACGAAGAACGCTTTGGGATCACTTCCTTTGTTTATCGGTCAAGAAGGC
CATTTCATTCAGGACGACTTTGTGGATTATTTTTCGAACCGTTCTTCATC
ATGAGatacgaagaagaagaaaatgagttGGATGAGTTGCAAAAGAAAGC
AGCAAATAAACAAAAACGTAGAGTTAAAAAAATTGGTGAACTATTACGTG
CCAAAGGCTTCATGTGGCTTGCAACTTCCCATGAAATCTTGGGTGGTTTT
CAACAAGCTGGAAATGTTGTGAGGTAAGTTCATCAAttctcttaaatatt
ttcataaattattaaGAACAATGAATCTTTACTTTGAATCTTGGGGAGGG
GCGCTCGAGAGGGGCCTTTAAATCTCAAGATTGACTAGTGCTATGACCTT
GAAACTTTGACCAGTGGTAGATATAGATAATTGAAGAtggtttgcaaaat
tttggttcGGCCACCTTTCTAgttagtattttacagaccagaccaaactt
gaccaaaatcatgtattgactgattgacttGTTCGATTTGACGGAAATTT
GTTCATAAAGGCTGATTTGTCAAATAATAGAGACTATTAACAGGAAAAGT
TCGTTTCCATGAGTATTAGGGAATTtgcagactggtctgtaaaatacatg
cTGACCACTTGCGGGAACTCATGAACTGCAggagcttttgacttgaaatt
ttcaccagtgatagatattgaccatctaagacagtgtggtattttacaga
ccggtcggttttttacctaaaatgatCACTTTCGGCATAACCACTTGTCc
gattttgctaaaattttgggTGCAAGCTTGTATCATCAATACCTAACACT
TTNGATATTGACCATCTAAGACAGtgtggtattttacagaccggtcggtt
ttttacctaaaatgatCACTTTCGGCATAACCACTCACCCGATTTTGCTA
AAGTTTTGGGTGCAAGCTTGTATCATTAATACCTAAcacttgtcaaaatt
tcaatggCATTTTCCACTCACTAGATACAGTATCCTAGGGCTGTTTAGGC
AAAAAAGGGTAATTTTGGGCCACTCTGTAAAATACACCATACCAACAGGT
ggcaaaaaaagtttaaagtgagAAAAAGCTAGAGGGGGtcctatttttgc
tattttcaataaatgatgacgtcatcaggtggtggttacgaaattttcat
taaagatGCTAATTCATATTCATATTTGTTGCCCACTTGCAAGATCTCAA
GTcaattggataaatatttcaaaatttatcaataaatttcgTTAGGCCCC
TCCCAATTAGAAAAGTTCAAGTTAGCAAATATAGAACGAACAAATACACC
TATCAGAGGAATTatcagaatttttttgtttctgataAATTTACAAGGAA
ATTCTTTTCTATGAGTGTAACGACTTCAGACATTTTGACGTCTGTTCTTC
CTGGTCATCTCCAACAACCCAGTACGCTCAAAAGCTAGGTAGGTGTTTTC
GGttcaaacaaaagattttattctGTTTTTCATTCTATAATAGGGTAGAA
GCAGAAGGGAATTGGATGGTTGATTGTCGTGACCAGTGGGAAGgggaaga
aggagaagaaagaGTTCTGAAAGATATGACGAACGAGAAAGGTGAAGAAT
ACGAATACGGTGATCGCCGTCAAGAATTAGTTTTCATCGGAATGACTTTG
AAATATCAAACCATACAAAAAATATTAGATGAATGTCTTTTGACTGACGA
TGAAATGAAGCTAGGACCGGAGAAATGGTTGGAACAGTTTGGCGAAGATG
CTCCGTTGAGATTGTTCTTAGTAGAGGATGAAGAAGgtgacatttttgtt
tttaatttataaaaaatcattCTTCTAGCTGTTTCTTTGGTGACTTTGTT
GGCGGATCAACTGCTGTTTTTCCTTTTAATACCACTATCTTTGTAGTCAA
AAGGAACCCCCTCCTTCAATTATTTTTGTCCTAAAGTAAAAAGTCTAAGG
GAAACCGATGTAGCGGATTATTTTAACTCCTTGTAAATGTCGGCCTCCCC
AGTTAAGAATAAACTAGAAAATAATGACTCCCCTAGAGTAgaaatttcct
aggaaatatcGACTCCCTTAGTAAATATTGGCTCCCTATAAAGAGGCTGA
GAGAGTCGTGATGAAATAGTTTATAATGATCCCCGACCCCCAAGTAGACA
AGAACTGGAGTCATTGCAGTGCTGTTCGATTCGGTTTTTTACGGAACTGA
CTTTTGTCGTTGGGACTCATTTTGGCGAAATTCCTTCATTCTCCAAGGGA
CTTAAAAGAGTCTTCAGAATGTGTGGTATTTTTGCATAACAGAATTTCAC
GTAATTTTCGGTTGACACGAAGTAAACTTTTATTCCTCAAGAATGTTTAC
CAAAAATCTATAGTTAgctacaaccaatcagctgttaggTCTATGGTGTG
ATgtcgaagacattgcagtgggtGCATATAATGAATAGGAAtagtataaa
attgttctttcattttGTTCGTTTGCAGAGGACAGTGAAGAGGACGAAGA
AGAAGATGGAGAGGGAACTGATGATGAGGAGACTGAAAACGAAGATGAAG
AGAAAAGGTAtactttttgtaaaatttgccaTTTGTCTTTTGCGGACCTA
CCTGGAGTTCCTATCAACTCCTAGTTAGTGAGTGAGTGAGTTGCACAAag
acgtgtttttatagaaaaatgggccaaattcaacatttttttataagcac
acaatCACTACCAATTACTCagttattagcttttctcgagattggctcat
tcattCTTTATGGTTTTTATGCACAAAcgtgcataactataaaccctcga
atgtgacggagcatGTTTTTTATTCGGGATTTTATTTTATCTGGGATTTg
tattccattgttttcaaatcagaaaattcagtggggatggaaaaaatagc
acaatattttgcagtcaGATTTTGgttatttgataatttttttgtgagtA
CAAAAGttagaggataattttccacgagacgatattttggctcCAAGGCT
TTTAGTATTCCCGTTTCGACCTGCgcatagtttttttttgtttttatttc
gtcAATGAAAATTATGTCAAGGGACAGGCAGTTTTCTTGAGATTTGGTTT
TTAGTAGTCCCTATCTGGATTTTGCCGAATCGGtctattcagtttttttt
aaccTGTTTTATCATTTAATATAGTGAAATGGACGAGAAGAGCTCAGAAA
AGACGACGGCTCCCGGTAAAAAGCGAAAGGTCAAGAAAGATGCGGAGAAt
aatgatgatgaagaaaagaaaaaagaaatcccAGCCAAGAGAAAGAAGAG
CAAAAAAGACCTCGATAATGAATAAAGAAGAAACTAAACCTGACAAAGAA
ATCCCAGTCAAGAGAAATAAGAGCAAGAAACATTGATTTCTGGGTAGGTT
AACTAAACATTCACAACTTGTGTATCAATGAGTTATTGATTGAGAAGTGT
GGAGCTTGGCGCTTGGCACTATCAGTCATCGTCTATAGGCTGCATACAAG
GGTGGATTAAGTTGTGTTCGATGAAATAGGGTTGAACGACACCAGGGGGG
GTACaaaggcagggtactaacccatagccgggtggtggtgtctatttttg
catttcaaaaaagttagtacccgttACTACTTTAGGGGTGGGGGTGTGTA
TTTATCACTCTTCTAGCAAGTACAGGgtactatttgggtactttttcaca
gagTTTTNtgtatttttcactcttctAGCAAGTACAGGgtactatttggg
tactttttcacagagttttgctcctttttcaataaaaaaagtagtctttt
gtaatattttgatttttttcaaatatatttttttttaattgagaaacttt
ttttttaattgagaaacttttttttactctttttgatttttgtgaagacA
AAACTTCCGAAATGGTCAAAAAGTGTGTTATTAAAATCAAAAGACAAAAG
CCTCTGACTTAATCAATGATAGTTTGTTTGAATTATCTGTCCAtttcagt
cagaaaaactaACATAGTACCCCCCCCCTGACGACACAAGTTTCTAGTTA
AAAAAGGAATTGAAACtattttattcatgatattcattacgtaatATTTT
CCATGGAACCATCccagtttttgccagtagtggttTCTTGGCTcgaattt
ctttgaattttcttGAGCACTTTGTAATTCAATTTATTTCATTGTATTTC
AGGGACCACTTGGATAAAGCTTTGATAAACATGCTTTGGGATTTGTAAAG
ATAATTTTCACACATTTTGTACATAGTTTGGATAACACCATTTTTTTTAT
CGTGTCAGatttaattcttttttgatatttctttctACCAATGTCTCATT
AGAATAAAATCCTCTCTTGCTATTTACCTCGTCGGATACTAAATGTAatc
aagaattaaaaaaaaaaccaaagaTGCATTTGAAAAAGACTACAANattt
aattcttttttgatatttctttctACCAATGTCTCATTAGAATAAAATCC
TCTCTTGCTATTTACCTCGTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030343XLOC_030343Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047641-exon-scaffold_133-1491911889:307553..307674TCONS_00047641-exon-scaffold_133-1491911889:307553..307674Clytia hemisphaericaexon
TCONS_00047641-exon-scaffold_133-1510915933:307553..307674TCONS_00047641-exon-scaffold_133-1510915933:307553..307674Clytia hemisphaericaexon
TCONS_00047641-exon-scaffold_133-1575043694:307553..307674TCONS_00047641-exon-scaffold_133-1575043694:307553..307674Clytia hemisphaericaexon
TCONS_00047641-exon-scaffold_133-1491911889:307739..308834TCONS_00047641-exon-scaffold_133-1491911889:307739..308834Clytia hemisphaericaexon
TCONS_00047641-exon-scaffold_133-1510915933:307739..308834TCONS_00047641-exon-scaffold_133-1510915933:307739..308834Clytia hemisphaericaexon
TCONS_00047641-exon-scaffold_133-1575043694:307739..308834TCONS_00047641-exon-scaffold_133-1575043694:307739..308834Clytia hemisphaericaexon
TCONS_00047641-exon-scaffold_133-1491911889:309041..309281TCONS_00047641-exon-scaffold_133-1491911889:309041..309281Clytia hemisphaericaexon
TCONS_00047641-exon-scaffold_133-1510915933:309041..309281TCONS_00047641-exon-scaffold_133-1510915933:309041..309281Clytia hemisphaericaexon
TCONS_00047641-exon-scaffold_133-1575043694:309041..309281TCONS_00047641-exon-scaffold_133-1575043694:309041..309281Clytia hemisphaericaexon
TCONS_00047641-exon-scaffold_133-1491911889:309676..310125TCONS_00047641-exon-scaffold_133-1491911889:309676..310125Clytia hemisphaericaexon
TCONS_00047641-exon-scaffold_133-1510915933:309676..310125TCONS_00047641-exon-scaffold_133-1510915933:309676..310125Clytia hemisphaericaexon
TCONS_00047641-exon-scaffold_133-1575043694:309676..310125TCONS_00047641-exon-scaffold_133-1575043694:309676..310125Clytia hemisphaericaexon
TCONS_00047641-exon-scaffold_133-1491911889:311396..311688TCONS_00047641-exon-scaffold_133-1491911889:311396..311688Clytia hemisphaericaexon
TCONS_00047641-exon-scaffold_133-1510915933:311396..311688TCONS_00047641-exon-scaffold_133-1510915933:311396..311688Clytia hemisphaericaexon
TCONS_00047641-exon-scaffold_133-1575043694:311396..311688TCONS_00047641-exon-scaffold_133-1575043694:311396..311688Clytia hemisphaericaexon
TCONS_00047641-exon-scaffold_133-1491911889:312381..312459TCONS_00047641-exon-scaffold_133-1491911889:312381..312459Clytia hemisphaericaexon
TCONS_00047641-exon-scaffold_133-1510915933:312381..312459TCONS_00047641-exon-scaffold_133-1510915933:312381..312459Clytia hemisphaericaexon
TCONS_00047641-exon-scaffold_133-1575043694:312381..312459TCONS_00047641-exon-scaffold_133-1575043694:312381..312459Clytia hemisphaericaexon
TCONS_00047641-exon-scaffold_133-1491911889:313077..313295TCONS_00047641-exon-scaffold_133-1491911889:313077..313295Clytia hemisphaericaexon
TCONS_00047641-exon-scaffold_133-1510915933:313077..313295TCONS_00047641-exon-scaffold_133-1510915933:313077..313295Clytia hemisphaericaexon
TCONS_00047641-exon-scaffold_133-1575043694:313077..313295TCONS_00047641-exon-scaffold_133-1575043694:313077..313295Clytia hemisphaericaexon
TCONS_00047641-exon-scaffold_133-1491911889:314105..314425TCONS_00047641-exon-scaffold_133-1491911889:314105..314425Clytia hemisphaericaexon
TCONS_00047641-exon-scaffold_133-1510915933:314105..314425TCONS_00047641-exon-scaffold_133-1510915933:314105..314425Clytia hemisphaericaexon
TCONS_00047641-exon-scaffold_133-1575043694:314105..314425TCONS_00047641-exon-scaffold_133-1575043694:314105..314425Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:307553..314425 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.59124	3.87703	2.09938	2.49935	0.865217	0.476192	1.47776	1.22006	1.92293	1.20059	1.66635	1.87791	3.81385	4.72963	4.75191	4.7252	4.65914	5.38292	5.02631	4.16107	5.53637	7.16458	1.97259	2.25925	0.0824366	0.625379	4.59838	5.29656	2.15484	2.09716
Blast
[Close]
BLAST of TCONS_00047641 vs. Swiss-Prot (Human)
Match: CBWD2 (COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.118e-21
Identity = 67/233 (28.76%), Postives = 129/233 (55.36%), Query Frame = 3 
Query:  729 LPVSLLCGFLGAGKTTLLKHILETKHNEEGFRCAVIVNDMATLN-IDKSLIDQSALVQSDEVIAMQNGCFCCTLQNDLVDQIVSLAQ-KNIFDYMLIEASGVSEPAQIAPLFDLCXXXXXXXXXXXXXXXXXXVARLDTCVTVIDAAEFYNNLESMKMYEEGDMVGTISELLMEQVEYSNVVILNKQDLINDKQRADILDRIKILNPRAKVLSSLQSKVDVKEILNTNLYNKV 1421
            +PV+++ G+LGAGKTTLL +IL  +H++   R AVI+N+    + ++KSL         +E + ++NGC CC+++++ +  I +L Q K  FDY+L+E +G+++P  +A +F                 ELG    LD  +T++D+         +K   E    G I+E    QV  ++ +++NK DL+ ++    +   I+ +N   ++L + +S+VD+  +L+ + ++ +
Sbjct:   42 IPVTIITGYLGAGKTTLLNYILTEQHSK---RVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDYILLETTGLADPGAVASMF-------------WVDAELGSDIYLDGIITIVDSK------YGLKHLAEEKPDGLINE-ATRQVALADAILINKTDLVPEEDVKKLRATIRSINGLGQILETQRSRVDLSNVLDLHAFDSL 251
The following BLAST results are available for this feature:
BLAST of TCONS_00047641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CBWD22.118e-2128.76COBW domain-containing protein 2 OS=Homo sapiens G... [more]
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