TCONS_00047643 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00047643
Unique Name	TCONS_00047643
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2249

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_133:307561..314425+

transcript sequence

>TCONS_00047643 ID=TCONS_00047643|Name=TCONS_00047643|organism=Clytia hemisphaerica|type=transcript|length=2249bp
AAAAGATAAAGAGATTTAAAAATACCAAAGAAAAACAATTGTGCTTTATC
AAACATGGTTGTAGAAGTTGATCAAAAGAATGTCAAAGCTGCATTAAAAG
ATGATGTCAAGGAGGTTGCCAAAATTACCAAGAAGCAGCCGGATCCAAAA
GATCTTTTACCCGTTTCATTGCTCTGTGGCTTTCTGGGAGCGGGTAAAAC
AACCCTTCTTAAGCACATCTTGGAAACCAAACACAATGAAGAGGGCTTTA
GATGTGCTGTTATCGTCAATGATATGGCAACTCTGAATATCGACAAAAGT
TTGATCGATCAGTCAGCCCTTGTTCAAAGTGACGAAGTCATTGCAATGCA
AAATGGTTGTTTTTGCTGCACTCTTCAAAATGACCTTGTGGATCAAATTG
TCTCTTTGGCACAAAAGAATATATTTGATTACATGTTGATCGAGGCATCA
GGAGTTTCGGAACCAGCCCAAATCGCTCCACTTTTTGATCTTTGTGAAGA
TGAGCATGACCATGAAGAGGAACATCCAGAAGGACCAGAGCTGGGTGAAG
TTGCAAGGCTTGATACATGTGTTACTGTTATTGATGCAGCTGAATTTTAC
AATAATCTTGAAAGCATGAAAATGTACGAGGAAGGGGACATGGTTGGAAC
GATTTCAGAACTTTTGATGGAACAAGTGGAGTATTCCAACGTTGTCATCC
TCAATAAACAAGATCTCATAAATGATAAGCAAAGAGCTGATATTCTAGAC
cgaattaaaattttaaatccaaGAGCGAAGGTGCTTTCTTCACTTCAAAG
TAAAGTAGATGTCAAGGAGATATTAAATACAAATTTGTACAACAAAGTGG
AGATGGATGAAGACTCAGTGATGTGCTCTGCAACCAGaattaaaGCAGAA
TCGAATGAGGTTGAACCAGAATGTTGCGTTAAATCTGTTGAATCGGGTAA
AAAGAAATGTTGTAAAAGTAAAAAGGCTGAGAACAAGCAAATTATTGATT
CCGGAAAATCACAACTATTTCTTGGAGTGGTGGACAAAATTGCTGGTCAG
AAACAACTAACCAGGCACGAAGAACGCTTTGGGATCACTTCCTTTGTTTA
TCGGTCAAGAAGGCCATTTCATTCAGGACGACTTTGTGGATTATTTTTCG
AACCGTTCTTCATCATGAGatacgaagaagaagaaaatgagttGGATGAG
TTGCAAAAGAAAGCAGCAAATAAACAAAAACGTAGAGTTAAAAAAATTGG
TGAACTATTACGTGCCAAAGGCTTCATGTGGCTTGCAACTTCCCATGAAA
TCTTGGGTGGTTTTCAACAAGCTGGAAATGTTGTGAGGGTAGAAGCAGAA
GGGAATTGGATGGTTGATTGTCGTGACCAGTGGGAAGgggaagaaggaga
agaaagaGTTCTGAAAGATATGACGAACGAGAAAGGTGAAGAATACGAAT
ACGGTGATCGCCGTCAAGAATTAGTTTTCATCGGAATGACTTTGAAATAT
CAAACCATACAAAAAATATTAGATGAATGTCTTTTGACTGACGATGAAAT
GAAGCTAGGACCGGAGAAATGGTTGGAACAGTTTGGCGAAGATGCTCCGT
TGAGATTGTTCTTAGTAGAGGATGAAGAAGAGGACAGTGAAGAGGACGAA
GAAGAAGATGGAGAGGGAACTGATGATGAGGAGACTGAAAACGAAGATGA
AGAGAAAAGTGAAATGGACGAGAAGAGCTCAGAAAAGACGACGGCTCCCG
GTAAAAAGCGAAAGGTCAAGAAAGATGCGGAGAAtaatgatgatgaagaa
aagaaaaaagaaatcccAGCCAAGAGAAAGAAGAGCAAAAAAGACCTCGA
TAATGAATAAAGAAGAAACTAAACCTGACAAAGAAATCCCAGTCAAGAGA
AATAAGAGCAAGAAACATTGATTTCTGGGGACCACTTGGATAAAGCTTTG
ATAAACATGCTTTGGGATTTGTAAAGATAATTTTCACACATTTTGTACAT
AGTTTGGATAACACCATTTTTTTTATCGTGTCAGatttaattcttttttg
atatttctttctACCAATGTCTCATTAGAATAAAATCCTCTCTTGCTATT
TACCTCGTCGGATACTAAATGTAatcaagaattaaaaaaaaaaccaaaga
TGCATTTGAAAAAGACTACAANatttaattcttttttgatatttctttct
ACCAATGTCTCATTAGAATAAAATCCTCTCTTGCTATTTACCTCGTCGG

Run BLAST on NCBI

transcript from alignment at scaffold_133:307561..314425+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00047643 ID=TCONS_00047643|Name=TCONS_00047643|organism=Clytia hemisphaerica|type=transcript|length=6865bp|location=Sequence derived from alignment at scaffold_133:307561..314425+ (Clytia hemisphaerica)
AAAAGATAAAGAGATTTAAAAATACCAAAGAAAAACAATTGTGCTTTATC
AAACATGGTTGTAGAAGTTGATCAAAAGAATGTCAAAGCTGCATTAAAAG
ATGATGTCAAGGAGGCTGACAAGATCACANGTTGATCAAAAGAATGTCAA
AGCTGCATTAAAAGATGATGTCAAGGAGGTTGCCAAAATTACCAAGGTTC
GTTTATAAACTGCTTttgttttttactttattttttattatccaTCTACA
ATCCCCACcgtaatatttggcacaaaaggggaattcccccAAATTTGAAA
ACCGCAAGTAattttttaagtgctttaaagtacggtttgaaagtagagtt
ttaactctgaattttaacacgagacttaagagttaggaccttaggatctc
aggatctaaaagttcaaaaatgttccaataaggctgagaatatagcctgg
aagccacttaatccctcccaaatcgaaaaatccaatgaaacaaagtggaa
gtactgaaactgcaattctcgctcgatctttaaattctgaaaacgttaaa
atacccaaaagtgtcaatatattttggcgCCGATTGTACTAGACAAATAG
ATAAACGCTAGCCCAATTCACCCAAAAGTTTTCCTTTCAAATAATTATCA
CAagataaaacaatgcaatgaaaGCACTGGAtaacatattatttaaaaat
gatttttagcaATAGGATCATGAGAGTCTTATCCAATTATATACCATATT
TCTAATATAGAAGCAGCCGGATCCAAAAGATCTTTTACCCGTTTCATTGC
TCTGTGGCTTTCTGGGAGCGGGTAAAACAACCCTTCTTAAGCACATCTTG
GAAACCAAACACAATGAAGAGGGCTTTAGATGTGCTGTTATCGTCAATGA
TATGGCAACTCTGAATATCGACAAAAGTTTGATCGATCAGTCAGCCCTTG
TTCAAAGTGACGAAGTCATTGCAATGCAAAATGGTTGTTTTTGCTGCACT
CTTCAAAATGACCTTGTGGATCAAATTGTCTCTTTGGCACAAAAGAATAT
ATTTGATTACATGTTGATCGAGGCATCAGGAGTTTCGGAACCAGCCCAAA
TCGCTCCACTTTTTGATCTTTGTGAAGATGAGCATGACCATGAAGAGGAA
CATCCAGAAGGACCAGAGCTGGGTGAAGTTGCAAGGCTTGATACATGTGT
TACTGTTATTGATGCAGCTGAATTTTACAATAATCTTGAAAGCATGAAAA
TGTACGAGGAAGGGGACATGGTTGGTAGGTTTCACTGATTTATGCCACAG
ATATCTTATTAACGTATCTATACGAGTAGCATACTTGCAATGGCAGTCAA
GGTGGGGGGGGCGATGGTTGGTGTAATAATAAAGAGCTATGTTTTttgca
aacttaatttttgaatttggaaTTATGTGTCAAAATATTTGGCTATGTAG
ATAGAATAATATACCATCTTTCAATTTTAGGAACGATTTCAGAACTTTTG
ATGGAACAAGTGGAGTATTCCAACGTTGTCATCCTCAATAAACAAGATCT
CATAAATGATAAGCAAAGAGCTGATATTCTAGACcgaattaaaattttaa
atccaaGAGCGAAGGTGCTTTCTTCACTTCAAAGTAAAGTAGATGTCAAG
GAGATATTAAATACAAATTTGTACAACAAAGTGGAGATGGATGAAGACTC
AGTGATGTGCTCTGCAACCAGGTAACATATCTCTTATCTTTTATATCTTA
GCATCAGGGAAGCATCTCTTATGAAGAAAGGAGGCAAGATCTTATCATTT
TGAACGAGAATTTCTCAAACTCGTAACACTACCATCTTACAGTATTAATG
TGTTGGGTAttgtaaaacttttttgaagaagaatattttacttttagaaC
TAAACCCAATTATTTTGAGAAGACGTATTGAAATTCCCAATCTTAGAACT
GTCCCTAATTTCCCAATAGGATCTGATTTCACTAGAAAATTTTGCAGATC
TTTCGAATGAGTATTGTGAAAACTTTTCCCTTTTGCTATTGAGACTCGCT
TTTATTTTGGAGAGGTCGTCAGGCTTTAGATTGGAGTTTTTTGGacattt
tacatatttttttagaattaaaGCAGAATCGAATGAGGTTGAACCAGAAT
GTTGCGTTAAATCTGTTGAATCGGGTAAAAAGAAATGTTGTAAAAGTAAA
AAGGCTGAGAACAAGCAAATTATTGATTCCGGAAAATCACAACTATTTCT
TGGAGTGGTGGACAAAATTGCTGGTCAGAAACAACTAACCAGGCACGAAG
AACGCTTTGGGATCACTTCCTTTGTTTATCGGTCAAGAAGGCCATTTCAT
TCAGGACGACTTTGTGGATTATTTTTCGAACCGTTCTTCATCATGAGata
cgaagaagaagaaaatgagttGGATGAGTTGCAAAAGAAAGCAGCAAATA
AACAAAAACGTAGAGTTAAAAAAATTGGTGAACTATTACGTGCCAAAGGC
TTCATGTGGCTTGCAACTTCCCATGAAATCTTGGGTGGTTTTCAACAAGC
TGGAAATGTTGTGAGGTAAGTTCATCAAttctcttaaatattttcataaa
ttattaaGAACAATGAATCTTTACTTTGAATCTTGGGGAGGGGCGCTCGA
GAGGGGCCTTTAAATCTCAAGATTGACTAGTGCTATGACCTTGAAACTTT
GACCAGTGGTAGATATAGATAATTGAAGAtggtttgcaaaattttggttc
GGCCACCTTTCTAgttagtattttacagaccagaccaaacttgaccaaaa
tcatgtattgactgattgacttGTTCGATTTGACGGAAATTTGTTCATAA
AGGCTGATTTGTCAAATAATAGAGACTATTAACAGGAAAAGTTCGTTTCC
ATGAGTATTAGGGAATTtgcagactggtctgtaaaatacatgcTGACCAC
TTGCGGGAACTCATGAACTGCAggagcttttgacttgaaattttcaccag
tgatagatattgaccatctaagacagtgtggtattttacagaccggtcgg
ttttttacctaaaatgatCACTTTCGGCATAACCACTTGTCcgattttgc
taaaattttgggTGCAAGCTTGTATCATCAATACCTAACACTTTNGATAT
TGACCATCTAAGACAGtgtggtattttacagaccggtcggttttttacct
aaaatgatCACTTTCGGCATAACCACTCACCCGATTTTGCTAAAGTTTTG
GGTGCAAGCTTGTATCATTAATACCTAAcacttgtcaaaatttcaatggC
ATTTTCCACTCACTAGATACAGTATCCTAGGGCTGTTTAGGCAAAAAAGG
GTAATTTTGGGCCACTCTGTAAAATACACCATACCAACAGGTggcaaaaa
aagtttaaagtgagAAAAAGCTAGAGGGGGtcctatttttgctattttca
ataaatgatgacgtcatcaggtggtggttacgaaattttcattaaagatG
CTAATTCATATTCATATTTGTTGCCCACTTGCAAGATCTCAAGTcaattg
gataaatatttcaaaatttatcaataaatttcgTTAGGCCCCTCCCAATT
AGAAAAGTTCAAGTTAGCAAATATAGAACGAACAAATACACCTATCAGAG
GAATTatcagaatttttttgtttctgataAATTTACAAGGAAATTCTTTT
CTATGAGTGTAACGACTTCAGACATTTTGACGTCTGTTCTTCCTGGTCAT
CTCCAACAACCCAGTACGCTCAAAAGCTAGGTAGGTGTTTTCGGttcaaa
caaaagattttattctGTTTTTCATTCTATAATAGGGTAGAAGCAGAAGG
GAATTGGATGGTTGATTGTCGTGACCAGTGGGAAGgggaagaaggagaag
aaagaGTTCTGAAAGATATGACGAACGAGAAAGGTGAAGAATACGAATAC
GGTGATCGCCGTCAAGAATTAGTTTTCATCGGAATGACTTTGAAATATCA
AACCATACAAAAAATATTAGATGAATGTCTTTTGACTGACGATGAAATGA
AGCTAGGACCGGAGAAATGGTTGGAACAGTTTGGCGAAGATGCTCCGTTG
AGATTGTTCTTAGTAGAGGATGAAGAAGgtgacatttttgtttttaattt
ataaaaaatcattCTTCTAGCTGTTTCTTTGGTGACTTTGTTGGCGGATC
AACTGCTGTTTTTCCTTTTAATACCACTATCTTTGTAGTCAAAAGGAACC
CCCTCCTTCAATTATTTTTGTCCTAAAGTAAAAAGTCTAAGGGAAACCGA
TGTAGCGGATTATTTTAACTCCTTGTAAATGTCGGCCTCCCCAGTTAAGA
ATAAACTAGAAAATAATGACTCCCCTAGAGTAgaaatttcctaggaaata
tcGACTCCCTTAGTAAATATTGGCTCCCTATAAAGAGGCTGAGAGAGTCG
TGATGAAATAGTTTATAATGATCCCCGACCCCCAAGTAGACAAGAACTGG
AGTCATTGCAGTGCTGTTCGATTCGGTTTTTTACGGAACTGACTTTTGTC
GTTGGGACTCATTTTGGCGAAATTCCTTCATTCTCCAAGGGACTTAAAAG
AGTCTTCAGAATGTGTGGTATTTTTGCATAACAGAATTTCACGTAATTTT
CGGTTGACACGAAGTAAACTTTTATTCCTCAAGAATGTTTACCAAAAATC
TATAGTTAgctacaaccaatcagctgttaggTCTATGGTGTGATgtcgaa
gacattgcagtgggtGCATATAATGAATAGGAAtagtataaaattgttct
ttcattttGTTCGTTTGCAGAGGACAGTGAAGAGGACGAAGAAGAAGATG
GAGAGGGAACTGATGATGAGGAGACTGAAAACGAAGATGAAGAGAAAAGG
TAtactttttgtaaaatttgccaTTTGTCTTTTGCGGACCTACCTGGAGT
TCCTATCAACTCCTAGTTAGTGAGTGAGTGAGTTGCACAAagacgtgttt
ttatagaaaaatgggccaaattcaacatttttttataagcacacaatCAC
TACCAATTACTCagttattagcttttctcgagattggctcattcattCTT
TATGGTTTTTATGCACAAAcgtgcataactataaaccctcgaatgtgacg
gagcatGTTTTTTATTCGGGATTTTATTTTATCTGGGATTTgtattccat
tgttttcaaatcagaaaattcagtggggatggaaaaaatagcacaatatt
ttgcagtcaGATTTTGgttatttgataatttttttgtgagtACAAAAGtt
agaggataattttccacgagacgatattttggctcCAAGGCTTTTAGTAT
TCCCGTTTCGACCTGCgcatagtttttttttgtttttatttcgtcAATGA
AAATTATGTCAAGGGACAGGCAGTTTTCTTGAGATTTGGTTTTTAGTAGT
CCCTATCTGGATTTTGCCGAATCGGtctattcagttttttttaaccTGTT
TTATCATTTAATATAGTGAAATGGACGAGAAGAGCTCAGAAAAGACGACG
GCTCCCGGTAAAAAGCGAAAGGTCAAGAAAGATGCGGAGAAtaatgatga
tgaagaaaagaaaaaagaaatcccAGCCAAGAGAAAGAAGAGCAAAAAAG
ACCTCGATAATGAATAAAGAAGAAACTAAACCTGACAAAGAAATCCCAGT
CAAGAGAAATAAGAGCAAGAAACATTGATTTCTGGGTAGGTTAACTAAAC
ATTCACAACTTGTGTATCAATGAGTTATTGATTGAGAAGTGTGGAGCTTG
GCGCTTGGCACTATCAGTCATCGTCTATAGGCTGCATACAAGGGTGGATT
AAGTTGTGTTCGATGAAATAGGGTTGAACGACACCAGGGGGGGTACaaag
gcagggtactaacccatagccgggtggtggtgtctatttttgcatttcaa
aaaagttagtacccgttACTACTTTAGGGGTGGGGGTGTGTATTTATCAC
TCTTCTAGCAAGTACAGGgtactatttgggtactttttcacagagTTTTN
tgtatttttcactcttctAGCAAGTACAGGgtactatttgggtacttttt
cacagagttttgctcctttttcaataaaaaaagtagtcttttgtaatatt
ttgatttttttcaaatatatttttttttaattgagaaactttttttttaa
ttgagaaacttttttttactctttttgatttttgtgaagacAAAACTTCC
GAAATGGTCAAAAAGTGTGTTATTAAAATCAAAAGACAAAAGCCTCTGAC
TTAATCAATGATAGTTTGTTTGAATTATCTGTCCAtttcagtcagaaaaa
ctaACATAGTACCCCCCCCCTGACGACACAAGTTTCTAGTTAAAAAAGGA
ATTGAAACtattttattcatgatattcattacgtaatATTTTCCATGGAA
CCATCccagtttttgccagtagtggttTCTTGGCTcgaatttctttgaat
tttcttGAGCACTTTGTAATTCAATTTATTTCATTGTATTTCAGGGACCA
CTTGGATAAAGCTTTGATAAACATGCTTTGGGATTTGTAAAGATAATTTT
CACACATTTTGTACATAGTTTGGATAACACCATTTTTTTTATCGTGTCAG
atttaattcttttttgatatttctttctACCAATGTCTCATTAGAATAAA
ATCCTCTCTTGCTATTTACCTCGTCGGATACTAAATGTAatcaagaatta
aaaaaaaaaccaaagaTGCATTTGAAAAAGACTACAANatttaattcttt
tttgatatttctttctACCAATGTCTCATTAGAATAAAATCCTCTCTTGC
TATTTACCTCGTCGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_030343	XLOC_030343	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_133	supercontig	scaffold_133:307561..314425 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.658462	2.51772	2.09885	0.0408497	2.77958	2.19578	7.72685	1.88719	4.25237	5.50188	11.3707	7.1094	12.2312	9.44618	2.20792	3.0251	0.996262	0.0233828	1.0213	4.96146e-08	0.012847	3.95434	5.21208	0.131988	1.82174	2.16022	0.0351194	0.00611338	2.54172	2.63371

Blast

[Close]

BLAST of TCONS_00047643 vs. Swiss-Prot (Human)
Match: CBWD2 (COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.330e-21
Identity = 67/233 (28.76%), Postives = 129/233 (55.36%), Query Frame = 1

Query:  157 LPVSLLCGFLGAGKTTLLKHILETKHNEEGFRCAVIVNDMATLN-IDKSLIDQSALVQSDEVIAMQNGCFCCTLQNDLVDQIVSLAQ-KNIFDYMLIEASGVSEPAQIAPLFDLCXXXXXXXXXXXXXXXXXXVARLDTCVTVIDAAEFYNNLESMKMYEEGDMVGTISELLMEQVEYSNVVILNKQDLINDKQRADILDRIKILNPRAKVLSSLQSKVDVKEILNTNLYNKV 849
            +PV+++ G+LGAGKTTLL +IL  +H++   R AVI+N+    + ++KSL         +E + ++NGC CC+++++ +  I +L Q K  FDY+L+E +G+++P  +A +F                 ELG    LD  +T++D+         +K   E    G I+E    QV  ++ +++NK DL+ ++    +   I+ +N   ++L + +S+VD+  +L+ + ++ +
Sbjct:   42 IPVTIITGYLGAGKTTLLNYILTEQHSK---RVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDYILLETTGLADPGAVASMF-------------WVDAELGSDIYLDGIITIVDSK------YGLKHLAEEKPDGLINE-ATRQVALADAILINKTDLVPEEDVKKLRATIRSINGLGQILETQRSRVDLSNVLDLHAFDSL 251

The following BLAST results are available for this feature:

BLAST of TCONS_00047643 vs. Swiss-Prot (Human)

BLAST of TCONS_00047643 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CBWD2	1.330e-21	28.76	COBW domain-containing protein 2 OS=Homo sapiens G...	[more]

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TCONS_00047643 (transcript) - C. hemisphaerica