TCONS_00047646 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047646
Unique NameTCONS_00047646
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2881

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047646 ID=TCONS_00047646|Name=TCONS_00047646|organism=Clytia hemisphaerica|type=transcript|length=2881bp
AAAAGATAAAGAGATTTAAAAATACCAAAGAAAAACAATTGTGCTTTATC
AAACATGGTTGTAGAAGTTGATCAAAAGAATGTCAAAGCTGCATTAAAAG
ATGATGTCAAGGAGGTTGCCAAAATTACCAAGaagcaGCCGGATCCAAAA
GATCTTCTACCCGTTTCATTGCTCTGTGGCTTTCTGGGAGCGGGTAAAAC
AACCCTCCTTAAGCACATCTTGGAGACCAAACACAATGAAGAGGGCTTTA
GATGTGCTGTTATCGTCAATGATATGGCAACTCTGAATATTGACAAAAGT
TTGATCGATCAGTCAGCCCTTGTTCAAAGTGACGAAGTCATTGCAATGCA
AAATGGTTGTTTTTGCTGCACTCTTCAAAGTGATCTTGTGGATCAGATTG
TGTCTTTGGCATCAAAGAATATATTTGATTACATGTTGATCGAGGCATCA
GGAGTTTCGGAACCTGCACAAATTGCTCCACTTTTCGATCTTTGTGAAGA
TGAGCATGACCATGAAGAGGAACATCCAGAAGGACCAGAGCTGGGTGAAG
TTGCAAGGCTTGATACATGTGTTACTGTTATTGATGCAGCTGAATTTTAC
AATAATCTTGAAAGTATGAAAATGTACGAGGATGGGGACATGGTTGGAAC
AATATCAGAATTGCTGATGGAACAAGTGGAATATTCCAATGTTGTTATTC
TCAATAAACAAGACTTGGTCAACGAACATCAAAAAGCTGACATCATGGCT
AAGATAAAGTTATTGAATCCAAGAGCAAAGATTTTGACCACATTTCAAAG
CACGATTGATGTGAGAGAGATTttgaatactaatttgtatagCAAAGAGG
CCATGGACGAGGATGCAGTCATTTGTTCTGCAACAAGgCAGGGTGATTCA
GAAGATGACATCTACTTACCAGAATGTTGCGTTAAATCTGTTGAATCTGG
CAAAAAGAAATGttgtaaaagtaaaaacgcTGAGAACAAGCAAATCGTTG
ATTCTGGAAAATCACAACTATTTCTTGGAGTGGTGGACAAAATTTCTGGC
AAAAAGCAATTGACCAGGCATGAAAAACGCTTTGGAATATCTTCCTTTGT
TTATCGGTCAAGAAGGCCTTTTCATCCGGGGCGGTTTAATGAATTATTCT
TAGAACCTTTCTTTATAATGAGAttcgaagaagaaaataacGAACTTGAT
CAACTTCAGAAAAGAGCAGCTGAGAAACAAAAAATACGAACGAAAAGCAT
TGGTGAATTATTACGAGCAAAAGGATTTTTATGGATCGCTTCTTCACATG
AAGTTCTGGGTGGCTTTCAGCAAGCTGGCAATGTCGTCAGGGTTGAGGAA
GAAGGTCCATGGATGGTACATCCTGAATGTCGTGACAAATGGGAAGGAAC
AGATACGGAAGAGAGAGTTCTGAAAGATATGACAAACGAGAAGGGTGAAG
AATATGAATACGGCGATCGCCGTCAAGAATTAGTTTTCATCGGAATGACT
TTGAAATATGAAACCATACAAAAAATATTAGATGAATGTCTTTTGACTGA
CGATGAAATGAAGTTGGGACCGGAGAAATGGTTTGAGACTATGGAGAGTG
AGGATAAATTGAAACTAAGTTTGGATGTCTCTGATGATGAAGACGAAGAT
TACGAAGATGAAAATGGGGAACAAGACGATATCAACGAGGGGGGTGAAAG
CGATCCTGAAAACGATGATGAAAAGGAAGAACCGAAAGAGATGGGAAAAG
TGGTCAATAACAAACGAAAAGGTGATGATGTTAAAGAAGAACAAAGACCT
GAAAACAAAAAGactaaaaagaaataaaaacaaaattactATTGCACGTA
GATTTTGACTtccaattttatattttttgaatcaaATAATGGATCAACTC
ATACTACCTAATCTTTCTTGATATGATAAAGTCTGTTTGGCCTCATATCT
CATGACCTGGGCCTAGTCCTTTTTTGAACCTActccggtggaggtccttt
aaattaacctgtttccttccgtccgtccgtccatcTGATGcaagcttttc
tcaggattggctcattcgATCTTTCTGATTTTCTTGCACAAGGATGCAAA
Attgtaatgcccaaaatgtgacggagcccgtttttcgaaaaatatattaa
tATACCGAAAAAACCGGGTTTTTTGGCTATATTTATCATTAGGTAGGTTC
AATATACATTGTGcttgttctttttattttaatcaaaCGCTAACCTAATG
GATTTGTGGTCTTATACTACCTTGTATACTAcatgcggttttgtagaggt
ctacAATTCAGACTAACGCTAGCCCAGCCTCTCGGACATATATGAATACT
AAAAGAgtttttgagagaatttttgGCATACCACCACCCCACCCCAGTTT
AAGTGGTGtcttagtacacatgtacttaAATTTTTGGGGACATTTTGACA
CATATACCGCCCAATTTTAGTCTTTTCTGGACAATTTTTGTCTTCTCGGG
ACCATTTTGCTCAAAAGTGATGATTTTGCAacataaaattcaatttttgc
tcaaatttatataattatagactaaatttaggctatttagagcaaaataa
gggaccttctcttaAGTTCATAAGGTCTGGCGGgttgaaaaattgtcaaa
aaatgaacaagcgggggggcgtttaattggaacctaagagtatatcTTTT
CGATCTTTTAATCTATTATACAATAACATAGTTCAATAGGAAAGGTATTG
TTATGTTTTTTGAAGTTGCTACCCATATATAGTATATACATATTAGGCAT
ACTGTATTACGCTTGTCATGCTTATTATGAACCAGACGCCTATATTAGGC
GTAAAATAGAAACTCTAAACGAATCATGTCA
Run BLAST on NCBI

transcript from alignment at scaffold_133:307561..322394+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047646 ID=TCONS_00047646|Name=TCONS_00047646|organism=Clytia hemisphaerica|type=transcript|length=14834bp|location=Sequence derived from alignment at scaffold_133:307561..322394+ (Clytia hemisphaerica)
AAAAGATAAAGAGATTTAAAAATACCAAAGAAAAACAATTGTGCTTTATC
AAACATGGTTGTAGAAGTTGATCAAAAGAATGTCAAAGCTGCATTAAAAG
ATGATGTCAAGGAGGCTGACAAGATCACANGTTGATCAAAAGAATGTCAA
AGCTGCATTAAAAGATGATGTCAAGGAGGTTGCCAAAATTACCAAGGTTC
GTTTATAAACTGCTTttgttttttactttattttttattatccaTCTACA
ATCCCCACcgtaatatttggcacaaaaggggaattcccccAAATTTGAAA
ACCGCAAGTAattttttaagtgctttaaagtacggtttgaaagtagagtt
ttaactctgaattttaacacgagacttaagagttaggaccttaggatctc
aggatctaaaagttcaaaaatgttccaataaggctgagaatatagcctgg
aagccacttaatccctcccaaatcgaaaaatccaatgaaacaaagtggaa
gtactgaaactgcaattctcgctcgatctttaaattctgaaaacgttaaa
atacccaaaagtgtcaatatattttggcgCCGATTGTACTAGACAAATAG
ATAAACGCTAGCCCAATTCACCCAAAAGTTTTCCTTTCAAATAATTATCA
CAagataaaacaatgcaatgaaaGCACTGGAtaacatattatttaaaaat
gatttttagcaATAGGATCATGAGAGTCTTATCCAATTATATACCATATT
TCTAATATAGAAGCAGCCGGATCCAAAAGATCTTTTACCCGTTTCATTGC
TCTGTGGCTTTCTGGGAGCGGGTAAAACAACCCTTCTTAAGCACATCTTG
GAAACCAAACACAATGAAGAGGGCTTTAGATGTGCTGTTATCGTCAATGA
TATGGCAACTCTGAATATCGACAAAAGTTTGATCGATCAGTCAGCCCTTG
TTCAAAGTGACGAAGTCATTGCAATGCAAAATGGTTGTTTTTGCTGCACT
CTTCAAAATGACCTTGTGGATCAAATTGTCTCTTTGGCACAAAAGAATAT
ATTTGATTACATGTTGATCGAGGCATCAGGAGTTTCGGAACCAGCCCAAA
TCGCTCCACTTTTTGATCTTTGTGAAGATGAGCATGACCATGAAGAGGAA
CATCCAGAAGGACCAGAGCTGGGTGAAGTTGCAAGGCTTGATACATGTGT
TACTGTTATTGATGCAGCTGAATTTTACAATAATCTTGAAAGCATGAAAA
TGTACGAGGAAGGGGACATGGTTGGTAGGTTTCACTGATTTATGCCACAG
ATATCTTATTAACGTATCTATACGAGTAGCATACTTGCAATGGCAGTCAA
GGTGGGGGGGGCGATGGTTGGTGTAATAATAAAGAGCTATGTTTTttgca
aacttaatttttgaatttggaaTTATGTGTCAAAATATTTGGCTATGTAG
ATAGAATAATATACCATCTTTCAATTTTAGGAACGATTTCAGAACTTTTG
ATGGAACAAGTGGAGTATTCCAACGTTGTCATCCTCAATAAACAAGATCT
CATAAATGATAAGCAAAGAGCTGATATTCTAGACcgaattaaaattttaa
atccaaGAGCGAAGGTGCTTTCTTCACTTCAAAGTAAAGTAGATGTCAAG
GAGATATTAAATACAAATTTGTACAACAAAGTGGAGATGGATGAAGACTC
AGTGATGTGCTCTGCAACCAGGTAACATATCTCTTATCTTTTATATCTTA
GCATCAGGGAAGCATCTCTTATGAAGAAAGGAGGCAAGATCTTATCATTT
TGAACGAGAATTTCTCAAACTCGTAACACTACCATCTTACAGTATTAATG
TGTTGGGTAttgtaaaacttttttgaagaagaatattttacttttagaaC
TAAACCCAATTATTTTGAGAAGACGTATTGAAATTCCCAATCTTAGAACT
GTCCCTAATTTCCCAATAGGATCTGATTTCACTAGAAAATTTTGCAGATC
TTTCGAATGAGTATTGTGAAAACTTTTCCCTTTTGCTATTGAGACTCGCT
TTTATTTTGGAGAGGTCGTCAGGCTTTAGATTGGAGTTTTTTGGacattt
tacatatttttttagaattaaaGCAGAATCGAATGAGGTTGAACCAGAAT
GTTGCGTTAAATCTGTTGAATCGGGTAAAAAGAAATGTTGTAAAAGTAAA
AAGGCTGAGAACAAGCAAATTATTGATTCCGGAAAATCACAACTATTTCT
TGGAGTGGTGGACAAAATTGCTGGTCAGAAACAACTAACCAGGCACGAAG
AACGCTTTGGGATCACTTCCTTTGTTTATCGGTCAAGAAGGCCATTTCAT
TCAGGACGACTTTGTGGATTATTTTTCGAACCGTTCTTCATCATGAGata
cgaagaagaagaaaatgagttGGATGAGTTGCAAAAGAAAGCAGCAAATA
AACAAAAACGTAGAGTTAAAAAAATTGGTGAACTATTACGTGCCAAAGGC
TTCATGTGGCTTGCAACTTCCCATGAAATCTTGGGTGGTTTTCAACAAGC
TGGAAATGTTGTGAGGTAAGTTCATCAAttctcttaaatattttcataaa
ttattaaGAACAATGAATCTTTACTTTGAATCTTGGGGAGGGGCGCTCGA
GAGGGGCCTTTAAATCTCAAGATTGACTAGTGCTATGACCTTGAAACTTT
GACCAGTGGTAGATATAGATAATTGAAGAtggtttgcaaaattttggttc
GGCCACCTTTCTAgttagtattttacagaccagaccaaacttgaccaaaa
tcatgtattgactgattgacttGTTCGATTTGACGGAAATTTGTTCATAA
AGGCTGATTTGTCAAATAATAGAGACTATTAACAGGAAAAGTTCGTTTCC
ATGAGTATTAGGGAATTtgcagactggtctgtaaaatacatgcTGACCAC
TTGCGGGAACTCATGAACTGCAggagcttttgacttgaaattttcaccag
tgatagatattgaccatctaagacagtgtggtattttacagaccggtcgg
ttttttacctaaaatgatCACTTTCGGCATAACCACTTGTCcgattttgc
taaaattttgggTGCAAGCTTGTATCATCAATACCTAACACTTTNGATAT
TGACCATCTAAGACAGtgtggtattttacagaccggtcggttttttacct
aaaatgatCACTTTCGGCATAACCACTCACCCGATTTTGCTAAAGTTTTG
GGTGCAAGCTTGTATCATTAATACCTAAcacttgtcaaaatttcaatggC
ATTTTCCACTCACTAGATACAGTATCCTAGGGCTGTTTAGGCAAAAAAGG
GTAATTTTGGGCCACTCTGTAAAATACACCATACCAACAGGTggcaaaaa
aagtttaaagtgagAAAAAGCTAGAGGGGGtcctatttttgctattttca
ataaatgatgacgtcatcaggtggtggttacgaaattttcattaaagatG
CTAATTCATATTCATATTTGTTGCCCACTTGCAAGATCTCAAGTcaattg
gataaatatttcaaaatttatcaataaatttcgTTAGGCCCCTCCCAATT
AGAAAAGTTCAAGTTAGCAAATATAGAACGAACAAATACACCTATCAGAG
GAATTatcagaatttttttgtttctgataAATTTACAAGGAAATTCTTTT
CTATGAGTGTAACGACTTCAGACATTTTGACGTCTGTTCTTCCTGGTCAT
CTCCAACAACCCAGTACGCTCAAAAGCTAGGTAGGTGTTTTCGGttcaaa
caaaagattttattctGTTTTTCATTCTATAATAGGGTAGAAGCAGAAGG
GAATTGGATGGTTGATTGTCGTGACCAGTGGGAAGgggaagaaggagaag
aaagaGTTCTGAAAGATATGACGAACGAGAAAGGTGAAGAATACGAATAC
GGTGATCGCCGTCAAGAATTAGTTTTCATCGGAATGACTTTGAAATATCA
AACCATACAAAAAATATTAGATGAATGTCTTTTGACTGACGATGAAATGA
AGCTAGGACCGGAGAAATGGTTGGAACAGTTTGGCGAAGATGCTCCGTTG
AGATTGTTCTTAGTAGAGGATGAAGAAGgtgacatttttgtttttaattt
ataaaaaatcattCTTCTAGCTGTTTCTTTGGTGACTTTGTTGGCGGATC
AACTGCTGTTTTTCCTTTTAATACCACTATCTTTGTAGTCAAAAGGAACC
CCCTCCTTCAATTATTTTTGTCCTAAAGTAAAAAGTCTAAGGGAAACCGA
TGTAGCGGATTATTTTAACTCCTTGTAAATGTCGGCCTCCCCAGTTAAGA
ATAAACTAGAAAATAATGACTCCCCTAGAGTAgaaatttcctaggaaata
tcGACTCCCTTAGTAAATATTGGCTCCCTATAAAGAGGCTGAGAGAGTCG
TGATGAAATAGTTTATAATGATCCCCGACCCCCAAGTAGACAAGAACTGG
AGTCATTGCAGTGCTGTTCGATTCGGTTTTTTACGGAACTGACTTTTGTC
GTTGGGACTCATTTTGGCGAAATTCCTTCATTCTCCAAGGGACTTAAAAG
AGTCTTCAGAATGTGTGGTATTTTTGCATAACAGAATTTCACGTAATTTT
CGGTTGACACGAAGTAAACTTTTATTCCTCAAGAATGTTTACCAAAAATC
TATAGTTAgctacaaccaatcagctgttaggTCTATGGTGTGATgtcgaa
gacattgcagtgggtGCATATAATGAATAGGAAtagtataaaattgttct
ttcattttGTTCGTTTGCAGAGGACAGTGAAGAGGACGAAGAAGAAGATG
GAGAGGGAACTGATGATGAGGAGACTGAAAACGAAGATGAAGAGAAAAGG
TAtactttttgtaaaatttgccaTTTGTCTTTTGCGGACCTACCTGGAGT
TCCTATCAACTCCTAGTTAGTGAGTGAGTGAGTTGCACAAagacgtgttt
ttatagaaaaatgggccaaattcaacatttttttataagcacacaatCAC
TACCAATTACTCagttattagcttttctcgagattggctcattcattCTT
TATGGTTTTTATGCACAAAcgtgcataactataaaccctcgaatgtgacg
gagcatGTTTTTTATTCGGGATTTTATTTTATCTGGGATTTgtattccat
tgttttcaaatcagaaaattcagtggggatggaaaaaatagcacaatatt
ttgcagtcaGATTTTGgttatttgataatttttttgtgagtACAAAAGtt
agaggataattttccacgagacgatattttggctcCAAGGCTTTTAGTAT
TCCCGTTTCGACCTGCgcatagtttttttttgtttttatttcgtcAATGA
AAATTATGTCAAGGGACAGGCAGTTTTCTTGAGATTTGGTTTTTAGTAGT
CCCTATCTGGATTTTGCCGAATCGGtctattcagttttttttaaccTGTT
TTATCATTTAATATAGTGAAATGGACGAGAAGAGCTCAGAAAAGACGACG
GCTCCCGGTAAAAAGCGAAAGGTCAAGAAAGATGCGGAGAAtaatgatga
tgaagaaaagaaaaaagaaatcccAGCCAAGAGAAAGAAGAGCAAAAAAG
ACCTCGATAATGAATAAAGAAGAAACTAAACCTGACAAAGAAATCCCAGT
CAAGAGAAATAAGAGCAAGAAACATTGATTTCTGGGTAGGTTAACTAAAC
ATTCACAACTTGTGTATCAATGAGTTATTGATTGAGAAGTGTGGAGCTTG
GCGCTTGGCACTATCAGTCATCGTCTATAGGCTGCATACAAGGGTGGATT
AAGTTGTGTTCGATGAAATAGGGTTGAACGACACCAGGGGGGGTACaaag
gcagggtactaacccatagccgggtggtggtgtctatttttgcatttcaa
aaaagttagtacccgttACTACTTTAGGGGTGGGGGTGTGTATTTATCAC
TCTTCTAGCAAGTACAGGgtactatttgggtactttttcacagagTTTTN
tgtatttttcactcttctAGCAAGTACAGGgtactatttgggtacttttt
cacagagttttgctcctttttcaataaaaaaagtagtcttttgtaatatt
ttgatttttttcaaatatatttttttttaattgagaaactttttttttaa
ttgagaaacttttttttactctttttgatttttgtgaagacAAAACTTCC
GAAATGGTCAAAAAGTGTGTTATTAAAATCAAAAGACAAAAGCCTCTGAC
TTAATCAATGATAGTTTGTTTGAATTATCTGTCCAtttcagtcagaaaaa
ctaACATAGTACCCCCCCCCTGACGACACAAGTTTCTAGTTAAAAAAGGA
ATTGAAACtattttattcatgatattcattacgtaatATTTTCCATGGAA
CCATCccagtttttgccagtagtggttTCTTGGCTcgaatttctttgaat
tttcttGAGCACTTTGTAATTCAATTTATTTCATTGTATTTCAGGGACCA
CTTGGATAAAGCTTTGATAAACATGCTTTGGGATTTGTAAAGATAATTTT
CACACATTTTGTACATAGTTTGGATAACACCATTTTTTTTATCGTGTCAG
atttaattcttttttgatatttctttctACCAATGTCTCATTAGAATAAA
ATCCTCTCTTGCTATTTACCTCGTCGGATACTAAATGTAatcaagaatta
aaaaaaaaaccaaagaTGCATTTGAAAAAGACTACAANatttaattcttt
tttgatatttctttctACCAATGTCTCATTAGAATAAAATCCTCTCTTGC
TATTTACCTCGTCGGATACTAAATGTAatcaagaattaaaaaaaaaattc
gagaaaGACTGCAGGCCTTGTCATAGACTTCTACCGGCTTTAGTTGTATT
TTGAATTCGCATTGTCCGAGATTTTCTTGTAAACTTCATGCCAAATGAat
atattttgtcatttttgactGATTAAATTACTATGAATCAAACATAAAAt
taatttgaattgttatttaaaCTCTTGTTTTATTCTTTTCAGAAAACAAC
ACACACGTAAAAACATGAATATTTAATATATGTTATAAGAAATGGGTTTG
GAAGCTGGCcggaaaaacacgaaaaatgcaTTGAAAGGCAACGTGTCAAA
ACAAGAAAAGGTAATGTGAGCAAAAAAGGCTATTATCTTCCTATACTTTC
TTTCTGATCAAATCAATGCTTTTAAAGGCCGGATTCCACTTGCGTGCGCT
GCGAgggcactttttcgagcaaagcttccatgctattggtcaaaagaaaa
atgaagcgatTCCATTGGcacgatctgacgtaacggttgaaaaaagttga
aatgtattcAACTTGTTTTTCGAGCGCACGCTACAttttaatgacgtaat
ctttttccaAGCAAATAGAATCGAAGCCAAACGGTGCGATCGTAGCGCGC
CCAAGTGGAGACCGTCCTTAAGAATATCGTGCTAAAAAACcccaaatttt
agaaattcgaATCAGAATATAGCTTCAGCATAATAGTGTTATTAGATTTC
ACCAGGGATATCGAGTCTGATCGGAGTTTCAACCGAATTTAATCCTTCCT
TAATAAAGGAGCGAATGCAAAAAAATATCTGATTGTCATTCGTCGtccac
atgactaaaggttcaatctcaaaataagtgccttagaaaattgaaatttt
ttagatTCTGTTCTGTTTTATGATTGGCTTTTTTGTCATTGGAAAACATT
GAATATTCCTCTGTAAGACAAATGAAGAATCCCAATGTCAAAGGTGAACA
CCAcagtaaaattttgagttttgtaaGGTACatactaattttgagattga
gcCTTGAGTCACGCGAGTGATAAATTTTATAACtccttttcatttttaga
agcaGCCGGATCCAAAAGATCTTCTACCCNAGGCCGGATTCCACTTGCGT
GCGCTGCGAgggcactttttcgagcaaagcttccatgctattggtcaaaa
gaaaaatgaagcgatTCCATTgacgcgatctgacgtaacggttgaaaaaa
gttgaaatgtattcAACTTGTTTTTCGAGCGCACGCTACAttttaatgac
gtaatctttttccaAGCAAATAGAATCGAAGCCAAACGGTGCGATCGTAG
CGCGCCCAAGTGGAGACCGTCCTTAAGAATATCGTGCTAAAAAACcccaa
attttagaaattcgaATCAGAATATAGCTTCAGCATAATAGTGTTATTAG
ATTTCACCAGGGATATCGAGTCTGATCGGAGTTTCAACCGAATTTAATCC
TTCCTTAATAAAGGAGCGAATGCAAAAAAATATCTGATTGTCATTCGTCG
tccacatgactaaaggttcaatctcaaaataagtgccttagaaaattgaa
attttttagatTCTGTTCTGTTTTATGATTGGCTTTTTTGTCATTGGAAA
ACATTGAATATTCCTCTGTAAGACAAATGAAGAATCCCAATGTCAAAGGT
GAACACCAcagtaaaattttgagttttgtaaGGTACatactaattttgag
attgagcCTTGAGTCACGCGAGTGATAAATTTTATAACtccttttcattt
ttagaagcaGCCGGATCCAAAAGATCTTCTACCCGTTTCATTGCTCTGTG
GCTTTCTGGGAGCGGGTAAAACAACCCTCCTTAAGCACATCTTGGAGACC
AAACACAATGAAGAGGGCTTTAGATGTGCTGTTATCGTCAATGATATGGC
AACTCTGAATATTGACAAAAGTTTGATCGATCAGTCAGCCCTTGTTCAAA
GTGACGAAGTCATTGCAATGCAAAATGGTTGTTTTTGCTGCACTCTTCAA
AGTGATCTTGTGGATCAGATTGTGTCTTTGGCATCAAAGAATATATTTGA
TTACATGTTGATCGAGGCATCAGGAGTTTCGGAACCTGCACAAATTGCTC
CACTTTTCGATCTTTGTGAAGATGAGCATGACCATGAAGAGGAACATCCA
GAAGGACCAGAGCTGGGTGAAGTTGCAAGGCTTGATACATGTGTTACTGT
TATTGATGCAGCTGAATTTTACAATAATCTTGAAAGTATGAAAATGTACG
AGGATGGGGACATGGTTGGTAAGAATGATATTTTTATATTCATACACTAT
GATACTTGTGACATGAATAGCATAGCTCAAACTCCTTTCTTTAAGGGGTC
ATGACCACTGAGCTTTACATAAATCTGAAGtaaaatagaaaacaacatGG
TGGACTAGTCGACTTCAAAACTGGGCACACTttcataggccatttcacag
tcgcaaagcgtaatgggtaatcaggaccactgcgcgctaataacgactta
ctattggtccaaagttttgaaaaaaattttcaagaaaaagatttttgcgt
ctagccaacgggaagccgtaatggaggcgcaatcagtcctgattacccat
gatccatttcgactgtgaaatggcctatgggAAATCTGTGAGAAATTACA
ATTAGCCTTTCTAGTATGTAAAAGAATATGTGTATCTGTCCTTTCAAAAC
AACGCCGAACNaccctggaggacactatgtctAGTATGTAAAAGAATATG
TGTACCTGTGCTTTCAAAACAACGCCGAACAAAGGTGGTGAATATAGCTT
TGTCCAGAGTTTACAAAGGTCAATGGCCAAATGACACCTCTGAAAATCCG
AAGAAGAGGATGGGTTGGgatattttcctgaaaaaggTGGTACTTAGATA
GGATTTTCGGGTCACGCTCACGATATCCTGTGTCGTCgtttttttaaagg
aaatctTGCTCTATTAGCAGTCAATTGCAAGACCGAATCTTgctggaatt
ttttaaagattttgccAACAAAGTTTTTGTCGTGTATAAAGCGCTTAACA
AATCAATAGAGGAATCGCCGTTTATGTGATAGTGATATGATTTTCTCCAT
TATGGAAAAATATTCGATTCGCATATATCACTGGTAAGTCATTGGAAGGT
TTTCTGTCAACTTTACTCCCAATGTAATATTTCTTATAACATTCTTAATT
TTCTAGGAACAATATCAGAATTGCTGATGGAACAAGTGGAATATTCCAAT
GTTGTTATTCTCAATAAACAAGACTTGGTCAACGAACATCAAAAAGCTGA
CATCATGGCTAAGATAAAGTTATTGAATCCAAGAGCAAAGATTTTGACCA
CATTTCAAAGCACGATTGATGTGAGAGAGATTttgaatactaatttgtat
agCAAAGAGGCCATGGACGAGGATGCAGTCATTTGTTCTGCAACAAGGTA
TATAGTTGATTTAGATTTACCAACAGTTTGtctctcacgtttatcgctac
gtagtacactctgtgcacaTTGTGCactctgtttgataaaaaaattgcga
tgaagtatgatttacaAATAGCAACACgtctctcatcgtctcccctctcc
cGCCAAcgctccatcgcagcggtcggtttgaaaaatctcaaatgaaaaaa
gacaatgacaacagaccctttacggcaatgaaatttgaaataagccgtag
atactgcgtttgtgtacagacaagcaGTTTGTATGATGGCGTGAAATCTG
AAAAACTTGATGTGACAGCGTAAATTTTTGGTCTGCTGAAAGGGCAACAT
GAAGTGACCCGTATAAGCCTAGCTGTGGCACAAAATGCAAAAGCAACCTT
TATTTCtaacattcaaaacaaaacgTTCATATGAGGTTTGATGATTATTG
AAACAAAGTTGTGTGCCAACTTGGAGAGTTATATTGTGTTTTCTATCTTA
AAAAATGGAATTAGCGCCGGATTGCCctgtttttcaaagattttcgaaGT
TTACAAGTGTAAAGctataatattatttttcttacaaaaattgcTTTTTC
ACTAGCACCAAcgttactttttgttttacaaaCTCAATTTTAAATACAGT
TTCttcccactgacctttatataccctggaccaagtttctcaatcttggc
caagcaaaatctttgatcggagttttttgaaaagtggtaccctaatggcg
gcacttctcaatagcggtgtaaatgcattgagggcgctagatctacttta
cctcgaaaacttttgatgatgtagcgccatTAGACgttttttaacactgc
aatggattctttacgggtaccaattcaaaaaaaacttcgatcaaagatgg
cagatatagcttggtccagggattataaaggtcagtgtttcTTCCACTGA
AAAACAGTTGTgaaaaaaagcttgaaaatttcCGTTCAAAACACCATGGA
ATATAGAGAGtatattttatttaattctattgtttttaggCAGGGTGATT
CAGAAGATGACATCTACTTACCAGAATGTTGCGTTAAATCTGTTGAATCT
GGCAAAAAGAAATGttgtaaaagtaaaaacgcTGAGAACAAGCAAATCGT
TGATTCTGGAAAATCACAACTATTTCTTGGAGTGGTGGACAAAATTTCTG
GCAAAAAGCAATTGACCAGGCATGAAAAACGCTTTGGAATATCTTCCTTT
GTTTATCGGTCAAGAAGGCCTTTTCATCCGGGGCGGTTTAATGAATTATT
CTTAGAACCTTTCTTTATAATGAGAttcgaagaagaaaataacGAACTTG
ATCAACTTCAGAAAAGAGCAGCTGAGAAACAAAAAATACGAACGAAAAGC
ATTGGTGAATTATTACGAGCAAAAGGATTTTTATGGATCGCTTCTTCACA
TGAAGTTCTGGGTGGCTTTCAGCAAGCTGGCAATGTCGTCAGGTAAATTT
TGATCTTAAAATTATGTTTAGATATAATCTTTAGCTAGAGGTCATCGATA
TAGTAAGTACGCCAAAATTTCCGAATATTTGACGTCCCCTCCCCCATCCT
CATAGAAACGATGCGATTCGAACAATAATTTATGCTTTTCTAAACCCCCC
CCCTTCACTGCTCACGCTTTATATAGATGATCCCCTAGACTGATCTAAAT
CTGCGAATATGAGAATTCAATTTGCTTGCATTCCAACCATCCGTCtcatt
tggcttaaaaaacaatagaaatcaaattatgggaaaatgttaagttttga
gattcaaAAACTTGGCACGAGGTGAATTATAAGCATTATAATTcatcata
agcatataataagcatagtCTATGCCTTGATGCTTTTGAAAGCTTAAACC
TACACGAGCGTGAccaaggggcagacacttgcttataaaaagaagtaTGT
ATTGTCAGTGAAGATGGACATTTGTTCAAGGACTCTTACATCATTTGTGA
ATTGTTTTATTATAGGGTTGAGGAAGAAGGTCCATGGATGGTACATCCTG
AATGTCGTGACAAATGGGAAGGAACAGATACGGAAGAGAGAGTTCTGAAA
GATATGACAAACGAGAAGGGTGAAGAATATGAATACGGCGATCGCCGTCA
AGAATTAGTTTTCATCGGAATGACTTTGAAATATGAAACCATACAAAAAA
TATTAGATGAATGTCTTTTGACTGACGATGAAATGAAGTTGGGACCGGAG
AAATGGTTTGAGACTATGGAGAGTGAGGATAAATTGAAACTAAGTTTGGA
TGTCTCTGATGATGAAGACGAAGATTACGAAGATGAAAATGGGGAACAAG
ACGATATCAACGAGGGGGGTGAAAGGTAAgatatttttgttcttttgtta
cATAATTCGTAGAGAGCACCTAACCGAAAACCGgaatttttcatctcgtt
tcttggTGACTTTAGCCTTTACTTTCGATACTCCTGTAGTAGCTAAAAAA
TCGAATTtacgtcaaagcacttgaaagtcttctatttttcagaaatcgtc
aaagtggaacttaccaaaaaacgagatgaaaaatcccagtttttggtgag
gtgctcgctatggAAAACCTGGGTTCCCAACAatgcgggtgacgtctagt
ataggctacataacttttatctgatattccgacggtgtattggcggccgc
ccacgctaaagctctgaaggagcgggccaatttaccatcggagacctata
gtagtcatcgtttgatgtaccgcatcacagtCNGAGTTAAAGAGACACCA
CGCCATCCTTTACGCCTACATCAGTATATCATTGTTCAAACCTTCGTGCG
CGGCTAGACAATTATTATTCGCCGGTTTATCCGAAAAAATAGCGTGCTTG
ATTGCTTCTCACTCGGTAACATTTAGCTACTAGCGTACATAATTCACATT
CACATTATGGTTTCTTCTCCTTAAAGGACATCATTTCAACGCATCTCTTC
CCATTTGCTTGCACTACAGCATCTTTAAACGAAAATAAACAACTCCCGCC
CCACGCGAGcacaaaatgctgaaaattctttaaattattctgctttgtca
gcactAGAAGCGCCTCTTTTCTATATCAAAGTAAGAATATATACGTACAG
TACGCAGCGCTGatgagtcctaataaggacgaaatacATATGCTgttctg
ccacccaaatctcctgagtgaatatagttcaCATATTATGTCTGAAAAGA
AATGTATTTATCTGTCTACGTTTAATATATGTTTTTTTACTTCCTTTAAA
AAGCGATCCTGAAAACGATGATGAAAAGGAAGAACCGAAAGAGATGGGAA
AAGTGGTCAATAACAAACGAAAAGGTGATGATGTTAAAGAAGAACAAAGA
CCTGAAAACAAAAAGactaaaaagaaataaaaacaaaattactATTGCAC
GTAGATTTTGACTtccaattttatattttttgaatcaaATAATGGATCAA
CTCATACTACCTAATCTTTCTTGATATGATAAAGTCTGTTTGGCCTCATA
TCTCATGACCTGGGCCTAGTCCTTTTTTGAACCTActccggtggaggtcc
tttaaattaacctgtttccttccgtccgtccgtccatcTGATGcaagctt
ttctcaggattggctcattcgATCTTTCTGATTTTCTTGCACAAGGATGC
AAAAttgtaatgcccaaaatgtgacggagcccgtttttcgaaaaatatat
taatATACCGAAAAAACCGGGTTTTTTGGCTATATTTATCATTAGGTAGG
TTCAATATACATTGTGcttgttctttttattttaatcaaaCGCTAACCTA
ATGGATTTGTGGTCTTATACTACCTTGTATACTAcatgcggttttgtaga
ggtctacAATTCAGACTAACGCTAGCCCAGCCTCTCGGACATATATGAAT
ACTAAAAGAgtttttgagagaatttttgGCATACCACCACCCCACCCCAG
TTTAAGTGGTGtcttagtacacatgtacttaAATTTTTGGGGACATTTTG
ACACATATACCGCCCAATTTTAGTCTTTTCTGGACAATTTTTGTCTTCTC
GGGACCATTTTGCTCAAAAGTGATGATTTTGCAacataaaattcaatttt
tgctcaaatttatataattatagactaaatttaggctatttagagcaaaa
taagggaccttctcttaAGTTCATAAGGTCTGGCGGgttgaaaaattgtc
aaaaaatgaacaagcgggggggcgtttaattggaacctaagagtatatcT
TTTCGATCTTTTAATCTATTATACAATAACATAGTTCAATAGGAAAGGTA
TTGTTATGTTTTTTGAAGTTGCTACCCATATATAGTATATACATATTAGG
CATACTGTATTACGCTTGTCATGCTTATTATGAACCAGACGCCTATATTA
GGCGTAAAATAGAAACTCTAAACGAATCATGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030343XLOC_030343Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047646-exon-scaffold_133-1491911889:307561..307665TCONS_00047646-exon-scaffold_133-1491911889:307561..307665Clytia hemisphaericaexon
TCONS_00047646-exon-scaffold_133-1510915933:307561..307665TCONS_00047646-exon-scaffold_133-1510915933:307561..307665Clytia hemisphaericaexon
TCONS_00047646-exon-scaffold_133-1575043694:307561..307665TCONS_00047646-exon-scaffold_133-1575043694:307561..307665Clytia hemisphaericaexon
TCONS_00047646-exon-scaffold_133-1491911889:307730..307756TCONS_00047646-exon-scaffold_133-1491911889:307730..307756Clytia hemisphaericaexon
TCONS_00047646-exon-scaffold_133-1510915933:307730..307756TCONS_00047646-exon-scaffold_133-1510915933:307730..307756Clytia hemisphaericaexon
TCONS_00047646-exon-scaffold_133-1575043694:307730..307756TCONS_00047646-exon-scaffold_133-1575043694:307730..307756Clytia hemisphaericaexon
TCONS_00047646-exon-scaffold_133-1491911889:316215..316728TCONS_00047646-exon-scaffold_133-1491911889:316215..316728Clytia hemisphaericaexon
TCONS_00047646-exon-scaffold_133-1510915933:316215..316728TCONS_00047646-exon-scaffold_133-1510915933:316215..316728Clytia hemisphaericaexon
TCONS_00047646-exon-scaffold_133-1575043694:316215..316728TCONS_00047646-exon-scaffold_133-1575043694:316215..316728Clytia hemisphaericaexon
TCONS_00047646-exon-scaffold_133-1491911889:317667..317907TCONS_00047646-exon-scaffold_133-1491911889:317667..317907Clytia hemisphaericaexon
TCONS_00047646-exon-scaffold_133-1510915933:317667..317907TCONS_00047646-exon-scaffold_133-1510915933:317667..317907Clytia hemisphaericaexon
TCONS_00047646-exon-scaffold_133-1575043694:317667..317907TCONS_00047646-exon-scaffold_133-1575043694:317667..317907Clytia hemisphaericaexon
TCONS_00047646-exon-scaffold_133-1491911889:318950..319402TCONS_00047646-exon-scaffold_133-1491911889:318950..319402Clytia hemisphaericaexon
TCONS_00047646-exon-scaffold_133-1510915933:318950..319402TCONS_00047646-exon-scaffold_133-1510915933:318950..319402Clytia hemisphaericaexon
TCONS_00047646-exon-scaffold_133-1575043694:318950..319402TCONS_00047646-exon-scaffold_133-1575043694:318950..319402Clytia hemisphaericaexon
TCONS_00047646-exon-scaffold_133-1491911889:319926..320285TCONS_00047646-exon-scaffold_133-1491911889:319926..320285Clytia hemisphaericaexon
TCONS_00047646-exon-scaffold_133-1510915933:319926..320285TCONS_00047646-exon-scaffold_133-1510915933:319926..320285Clytia hemisphaericaexon
TCONS_00047646-exon-scaffold_133-1575043694:319926..320285TCONS_00047646-exon-scaffold_133-1575043694:319926..320285Clytia hemisphaericaexon
TCONS_00047646-exon-scaffold_133-1491911889:321214..322394TCONS_00047646-exon-scaffold_133-1491911889:321214..322394Clytia hemisphaericaexon
TCONS_00047646-exon-scaffold_133-1510915933:321214..322394TCONS_00047646-exon-scaffold_133-1510915933:321214..322394Clytia hemisphaericaexon
TCONS_00047646-exon-scaffold_133-1575043694:321214..322394TCONS_00047646-exon-scaffold_133-1575043694:321214..322394Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:307561..322394 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22326	1.514	0	2.68119	5.11481	0.052065	0.041451	4.85174	0	0	1.65855	0.76872	0.919118	0.507551	0.621294	0.625079	0	0.634994	0.575014	0.473083	0	0.565116	0	0	0.0556323	0.0328936	0	0.760768	1.28608	1.88958e-10
Blast
[Close]
BLAST of TCONS_00047646 vs. Swiss-Prot (Human)
Match: CBWD2 (COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.570e-21
Identity = 67/230 (29.13%), Postives = 123/230 (53.48%), Query Frame = 1 
Query:  157 LPVSLLCGFLGAGKTTLLKHILETKHNEEGFRCAVIVNDMATLN-IDKSLIDQSALVQSDEVIAMQNGCFCCTLQSDLVDQIVSLAS-KNIFDYMLIEASGVSEPAQIAPLFDLCXXXXXXXXXXXXXXXXXXVARLDTCVTVIDAAEFYNNLESMKMYEDGDMVGTISELLMEQVEYSNVVILNKQDLVNEHQKADIMAKIKLLNPRAKILTTFQSTIDVREILNTNLY 840
            +PV+++ G+LGAGKTTLL +IL  +H++   R AVI+N+    + ++KSL         +E + ++NGC CC+++ + +  I +L   K  FDY+L+E +G+++P  +A +F +  +                   LD  +T++D+     +L   K        G I+E    QV  ++ +++NK DLV E     + A I+ +N   +IL T +S +D+  +L+ + +
Sbjct:   42 IPVTIITGYLGAGKTTLLNYILTEQHSK---RVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDYILLETTGLADPGAVASMFWVDAELGSD-------------IYLDGIITIVDSKYGLKHLAEEKPD------GLINE-ATRQVALADAILINKTDLVPEEDVKKLRATIRSINGLGQILETQRSRVDLSNVLDLHAF 248
The following BLAST results are available for this feature:
BLAST of TCONS_00047646 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CBWD21.570e-2129.13COBW domain-containing protein 2 OS=Homo sapiens G... [more]
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