TCONS_00047651 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047651
Unique NameTCONS_00047651
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047651 ID=TCONS_00047651|Name=TCONS_00047651|organism=Clytia hemisphaerica|type=transcript|length=1430bp
CNGAACAACAGTAAAAAATGAGGTCAAAAGGCCACCCTCTCCCTTCGCAT
TGTTTTTCCAAGAGAAatggcaaaatttaaaaacggACAACCCAGAAATG
AATCAAAATGATTTGATGAAATTAGCATCTAATATGTGGAAAAATTCTGG
CTCGTATGAACAACAAAGATACAGAGACATCTTTGATGATAAAATGTCAA
CATATAAACAGTCTGTCAAGACACCCCCAAAACGTCCCATCAACTCCTAC
ATTCGATTTTACATGGACAATTTGGATTCGCTAAGTGTTATATATCCAAA
CGTGACTGATCGTTCGAAAAAGACTGCAGAAATGTGGAAAAATCTTTCCG
ATTTTGAGAAAGCGAAATATAAGCGTGAGTATGAACGAGATTTGGGTGAA
TTTATTCAAAACCTAACGGATGAAGATAAAGAGCTTATACAAAACAGACG
ACAAAGCTTGAATGACCAACGAGAGCGACGTGCCATTAAGAAATACGGTA
AAGCAGCATGGAACGAAAAACCCAAAGTCGGTGCACCGAATTCTTACATC
GCTTACATTCGTGAACACTCGGCATTGGTACCGAAAGGCGAGAATTCGTT
CGTTTATTTGAGCAAATCGTGGAAAGAATTAAGCGAttctgaaaaaagtg
tttaccaAGAGAAAGCTGATCAGTTATTCGAACTTGAACAACAAAAACTC
TCCGAATGGGAAGCTAAAAACGTAAAGGTCTGATTTGAGACTTAATTTGC
TCATTGCTATGTGATGGGGAAGATTAGGAGACCACTTAGCTTCGACATAG
CTTAGCAACTCTGCTTTACAAAACGCCCTAAAAGGACTTTAGGATTCTGG
AGGTCATCATTGCGTAGTTTTTTTACATAGACATCTTTCTTGTTAGCTTT
ACTGGCGTCAAGAAGATATAAGCTTTTGTAGATATAAGCTTTTGtagata
ttttttataaaaaaagaatcatTTTATTCGTAAGATGGACAGATTCAAAA
TAGAAAACTAGAAATGGAAAAATGTTCACGTTATTGCTTTTCTTATTTAC
AAAGTTATTAAATTTACATTATTTACATTGAATTTCGGGATGACTTCAcg
cccagctgacacacaacgtcgtttcagcgttcatctaatgttcacaacgt
ccatataacgttagatgaacgttgtaacaacgttgtgtgccagctgagcG
TGTGCCTTtacaatgaaaatatttttccttattAAAATCAATGACCAGAC
GCCCGAATACGTTGTGAATGTTGCATTATTGCCAGGCAGTCTTGAGATGA
ACTTTGTAAACTACATGGAATCAAGTGTAAAGAGTATCCATAACATACTA
gaaaacaaatataaaaaagacataGCTTAGCCTGTTATATTTTGTATTAA
TCAAAATGTTGAATTTTATTACAGATCCGG
Run BLAST on NCBI

transcript from alignment at scaffold_133:403316..406968+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047651 ID=TCONS_00047651|Name=TCONS_00047651|organism=Clytia hemisphaerica|type=transcript|length=3653bp|location=Sequence derived from alignment at scaffold_133:403316..406968+ (Clytia hemisphaerica)
CNGAACAACAGTAAAAAATGAGGTACCtttatagttttttttgttgagtt
tcaacctttctatcctATTTCATTCCTATCATAGTATCTCTGAAATGGAA
TTAGATGACATTAGACCAATTTACGGTATCTCGTCTAATGCTGAAACCCT
TCTTATAGATAGGATTAAAAGGTTGGTCagtcggaatcactgattgaaaa
agattttttcctcccTCTAATCGTCAATTAGTGACCGTGAATCGTGAATT
AGGCGGATctctaaaaattgtttggttcccgtcatccgaccgaccctgat
tcTTACTCTGAAGTTAGAGTCAGAGAGTCGGAGACCCCTTTTGCCACTTC
TGGATtcctaatagaccttttcgcctttgcgtccgccatattgaattgta
tgcaaaaatacaggaacgaaaatgccgtggttggatttagttggaatgta
tgcaaaacctatgcaagtttacacaaagattaaaaagacaacaaagcatc
ttataaataaatattataatcattagaacaataaaagatggaatttctta
atccaaaaggaaatatttacagaacaacaaaagccttttaggaatttgtt
cttaaagacattgcatattctgttttcatgccattaagaaattccacgaa
gacggagtacacacatcaaactttcaaaacacgcaaactgaaagcagtaa
ttatgacgtcacactttatcaatgttttgatttgatcatttggcggctct
attcccaggagaataatttgtcagccgaataaggattgttttttaccttc
gcgggtgatttttcagtttgagattctgtctaatgttatggtcttttgaa
gtgcttgttctaagagatgagtgaatataattgtttttagttttcaagag
aagcaaatttaatctttcttctacaagattacactttaatataatgccaa
ttatgcatctaagtttttatttaatactttctttttgcatatgttttgca
tactttctaagggaatttcaccacggcaattcggcattcaaccataattt
ttgcatacaattcaatatggcggacgcaaaggcgaaaaggtctattgtca
aCCTCTGCGCGCtcagtgtttacaagttttcaaatcgaaatagCGAGCGG
CGCGTCAGCGGGTCAGCGGAAAGTAAATTTTTAAAGATCCGCCTTAGTGA
TTTTCAAAGGGCTCTTTTCAATAAAGTATAAGCCTGTGCTGAAGGACTAG
TAAGCAAATCTCCTTGGTTGGATTTTAAGCCAACTAATCCTACcaaagtt
tttacaaaaatgggagattgaaactaaaatttaccacccaattttggaaa
agtatatcactcaaaaacaaaggaattgctagatttaCTATACTGTAATC
CAATCAATTCACTTCTGAAAATTGACTGAggtaaattttcgaaaatctca
GACTCCTCGCCCTCGCCCTAAGTAAGGCTTAGTTATAAAATTATAggatg
ttgttttttcattctttcTATATCTCTTCAGGTCAAAAGGCCACCCTCTC
CCTTCGCATTGTTTTTCCAAGAGAAatggcaaaatttaaaaacggACAAC
CCAGAAATGAATCAAAATGATTTGATGAAATTAGCATCTAATATGTGGAA
AAATTCTGGCTCGTATGAACAACAAAGATACAGAGACATCTTTGATGATA
AAATGTCAACATATAAACAGTCTGTCAAGGTAATTATTTTAATTGAGTTA
TAAGTGATTGATTCCACTTTCTAATAATAGGccttaaaatttaaattata
ttGACGGCAACCACTGAAAAAATCtcatattttttgaatattttttaaac
atttttttagatttttagatctttctaaaaatttatcccattataaagta
tatcaaaacatatcagaagGGATGTCTGCAGCAGCCTAAGCATAGTGGGA
CTCTCTCGGTGTCATTGTTGCAATTCCCtcccaaaaaagtaaaaaatgac
CCTGAATCATATTTATAATATTTATAGACACCCCCAAAACGTCCCATCAA
CTCCTACATTCGATTTTACATGGACAATTTGGATTCGCTAAGTGTTATAT
ATCCAAACGTGACTGATCGTTCGAAAAAGACTGCAGAAATGTGGAAAAAT
CTTTCCGATTTTGAGAAAGCGAAATATAAGCGTGAGTATGAACGAGATTT
GGGTGAATTTATTCAAAACCTAACGGATGAAGATAAAGAGCTTATACAAA
ACAGACGACAAAGCTTGAATGACCAACGAGAGCGACGTGCCATTAAGAAA
TACGGTAAAGCAGCATGGAACGAAAAACCCAAAGTCGGTGCACCGAATTC
TTACATCGCTTACATTCGTGAACACTCGGCATTGGTACCGAAAGGCGAGA
ATTCGTTCGTTTATTTGAGCAAATCGTGGAAAGAATTAAGCGAttctgaa
aaaagtgtttaccaAGAGAAAGCTGATCAGTTATTCGAACTTGAACAACA
AAAACTCTCCGAATGGGAAGCTAAAAACGTAAAGGTCTGATTTGAGACTT
AATTTGCTCATTGCTATGTGATGGGGAAGATTAGGAGACCACTTAGCTTC
GACATAGCTTAGCAACTCTGCTTTACAAAACGCCCTAAAAGGACTTTAGG
ATTCTGGAGGTCATCATTGCGTAGTTTTTTTACATAGACATCTTTCTTGT
TAGCTTTACTGGCGTCAAGAAGATATAAGCTTTTGTAGATATAAGCTTTT
GtagatattttttataaaaaaagaatcatTTTATTCGTAAGATGGACAGA
TTCAAAATAGAAAACTAGAAATGGAAAAATGTTCACGTTATTGCTTTTCT
TATTTACAAAGTTATTAAATTTACATTATTTACATTGAATTTCGGGATGA
CTTCAcgcccagctgacacacaacgtcgtttcagcgttcatctaatgttc
acaacgtccatataacgttagatgaacgttgtaacaacgttgtgtgccag
ctgagcGTGTGCCTTtacaatgaaaatatttttccttattAAAATCAATG
ACCAGACGCCCGAATACGTTGTGAATGTTGCATTATTGCCAGGCGACCCT
AGTATTGAATGTTGCATTATTGCCctagcgaccgtagtacagtggtagag
catccggctacggttcgcaaggttgtgggttcaacccccagccgggtcat
accaaagattcccaaaatggtactNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNgggagaaagagtggcgccctcccctaccttcgggtagatagctatc
gaaagaggagccttcgggtcgcctccgactgcggtcgcagacttactact
ATTGCCAGGCAGTCTTGAGATGAACTTTGTAAACTACATGGAATCAAGTG
TAAAGAGTATCCATAACATACTAgaaaacaaatataaaaaagacataGCT
TAGCCTGTTATATTTTGTATTAATCAAAATGTTGAATTTTATTACAGATC
CGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030345XLOC_030345Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047651-exon-scaffold_133-1491911889:403316..403337TCONS_00047651-exon-scaffold_133-1491911889:403316..403337Clytia hemisphaericaexon
TCONS_00047651-exon-scaffold_133-1510915933:403316..403337TCONS_00047651-exon-scaffold_133-1510915933:403316..403337Clytia hemisphaericaexon
TCONS_00047651-exon-scaffold_133-1575043694:403316..403337TCONS_00047651-exon-scaffold_133-1575043694:403316..403337Clytia hemisphaericaexon
TCONS_00047651-exon-scaffold_133-1491911889:404847..405044TCONS_00047651-exon-scaffold_133-1491911889:404847..405044Clytia hemisphaericaexon
TCONS_00047651-exon-scaffold_133-1510915933:404847..405044TCONS_00047651-exon-scaffold_133-1510915933:404847..405044Clytia hemisphaericaexon
TCONS_00047651-exon-scaffold_133-1575043694:404847..405044TCONS_00047651-exon-scaffold_133-1575043694:404847..405044Clytia hemisphaericaexon
TCONS_00047651-exon-scaffold_133-1491911889:405343..406407TCONS_00047651-exon-scaffold_133-1491911889:405343..406407Clytia hemisphaericaexon
TCONS_00047651-exon-scaffold_133-1510915933:405343..406407TCONS_00047651-exon-scaffold_133-1510915933:405343..406407Clytia hemisphaericaexon
TCONS_00047651-exon-scaffold_133-1575043694:405343..406407TCONS_00047651-exon-scaffold_133-1575043694:405343..406407Clytia hemisphaericaexon
TCONS_00047651-exon-scaffold_133-1491911889:406824..406968TCONS_00047651-exon-scaffold_133-1491911889:406824..406968Clytia hemisphaericaexon
TCONS_00047651-exon-scaffold_133-1510915933:406824..406968TCONS_00047651-exon-scaffold_133-1510915933:406824..406968Clytia hemisphaericaexon
TCONS_00047651-exon-scaffold_133-1575043694:406824..406968TCONS_00047651-exon-scaffold_133-1575043694:406824..406968Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:403316..406968 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.5967	21.9898	49.7506	58.1833	33.6043	20.6853	18.1166	19.4644	25.908	21.9503	14.3352	16.4323	9.20155	9.42586	14.203	13.7527	42.4978	41.1691	3.37362	6.47618	21.4613	20.426	25.2417	22.6929	19.9663	17.5479	26.4867	14.165	15.208	16.3515
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047651 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top