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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047652 ID=TCONS_00047652|Name=TCONS_00047652|organism=Clytia hemisphaerica|type=transcript|length=864bp
agtagactgtaaatcactcccttgacacatttgttagcatttgaaagaat
tttgtctcagatgagaggtcactcttaacaaaaattactgtagggctaag
gtcattccttttgaacgcaaattcaactctatgtgttcgttttgctgcgg
tggcaccttaatgaaagttatggctagtttataaatacttaattaaaaaa
aaactagatataattatttttaacattaaattgaaaaataagattGTAAA
TTCAACCAATGATAAAGCAATGTTTTTGTGATAAAAAACATCTAACCAAA
ACAGGATCAATATAATTACATATTTACACGTCCACAAATTATAAAGATGA
TATTTTTACGGTAAATAAAGGAGGCGTCCCTCTTGTGCTGACAGAGAAGA
ATTAACAATTTCTTCTTGGCAAATAGCAGGGGATACGTTAAAAgctgttt
tttataaaattttgcaaattgaaattaaaactgTGGGTCATATAATCCGA
ATCGGAAGTAAATACAACTGACATCGTAGAATTTTCTTCTAGATCTTGCT
TCGTCTTAGttattccaaaaatttcacACAATCGCTGTATTGGAAGTATA
CATATTTAGAAAAAGTTTCActaaaacctataaaaatattCGTACATTTT
AAGTTTCCATTCCACCAACCACCATCAAGAAAATGCTATCTGGATATCAT
GAATACTTAGTTTCTGTCTGTCAGTGAGGCCAGGAAAGCACTTATTGTGA
AGAACCAGGCGATCAGGAAATAGTAAAAGCACCATGCAGCTGAGTaggtt
ttgaaatctttttcatgATCCAGTGAGCCAGCAAATACACCCAATACTAT
GATACCAATAATTG Run BLAST on NCBI transcript from alignment at scaffold_133:474116..475061+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047652 ID=TCONS_00047652|Name=TCONS_00047652|organism=Clytia hemisphaerica|type=transcript|length=946bp|location=Sequence derived from alignment at scaffold_133:474116..475061+ (Clytia hemisphaerica)
agtagactgtaaatcactcccttgacacatttgttagcatttgaaagaat
tttgtctcagatgagaggtcactcttaacaaaaattactgtagggctaag
gtcattccttttgaacgcaaattcaactctatgtgttcgttttgctgcgg
tggcaccttaatgaaagttatggctagtttataaatacttaattaaaaaa
aaactagatataattatttttaacattaaattgaaaaataagattGTAAA
TTCAACCAATGATAAAGCAATGTTTTTGTGATAAAAAACATCTAACCAAA
ACAGGATCAATATAATTACATATTTACACGTCCACAAATTATAAAGATGA
TATTTTTACGGTAAATAAAGGAGGCGTCCCTCTTGTGCTGACAGAGAAGA
ATTAACAATTTCTTCTTGGCAAATAGCAGGGGATACGTTAAAAgctgttt
tttataaaattttgcaaattgaaattaaaactgTGGGTCATATAATCCGA
ATCGGAAGTAAATACAACTGACATCGTAGAATTTTCTTCTAGATCTTGCT
TCGTCTTAGGCAACATTGATATTAGTTAATTCATTGCAATATACAACAAA
ATGGCTAGAAATTGGAATCTCCTATTAGTATTTGAATTTagttattccaa
aaatttcacACAATCGCTGTATTGGAAGTATACATATTTAGAAAAAGTTT
CActaaaacctataaaaatattCGTACATTTTAAGTTTCCATTCCACCAA
CCACCATCAAGAAAATGCTATCTGGATATCATGAATACTTAGTTTCTGTC
TGTCAGTGAGGCCAGGAAAGCACTTATTGTGAAGAACCAGGCGATCAGGA
AATAGTAAAAGCACCATGCAGCTGAGTaggttttgaaatctttttcatgA
TCCAGTGAGCCAGCAAATACACCCAATACTATGATACCAATAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047652-exon-scaffold_133-1491911889:474116..474674 | TCONS_00047652-exon-scaffold_133-1491911889:474116..474674 | Clytia hemisphaerica | exon |
| TCONS_00047652-exon-scaffold_133-1510915933:474116..474674 | TCONS_00047652-exon-scaffold_133-1510915933:474116..474674 | Clytia hemisphaerica | exon |
| TCONS_00047652-exon-scaffold_133-1575043694:474116..474674 | TCONS_00047652-exon-scaffold_133-1575043694:474116..474674 | Clytia hemisphaerica | exon |
| TCONS_00047652-exon-scaffold_133-1491911889:474757..475061 | TCONS_00047652-exon-scaffold_133-1491911889:474757..475061 | Clytia hemisphaerica | exon |
| TCONS_00047652-exon-scaffold_133-1510915933:474757..475061 | TCONS_00047652-exon-scaffold_133-1510915933:474757..475061 | Clytia hemisphaerica | exon |
| TCONS_00047652-exon-scaffold_133-1575043694:474757..475061 | TCONS_00047652-exon-scaffold_133-1575043694:474757..475061 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_133 | supercontig | scaffold_133:474116..475061 + |
Blast
The following BLAST results are available for this feature:
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