TCONS_00047653 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047653
Unique NameTCONS_00047653
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1582

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047653 ID=TCONS_00047653|Name=TCONS_00047653|organism=Clytia hemisphaerica|type=transcript|length=1582bp
CTTAAAAGGTATAAATAGTTGGTAGAATTTCCAGAAAATCATCCTCTTTC
AAATTCATCATTTAACAAGAAGAAAACAAAGCAACATCAGAATGAAGATT
TGGAaagttttattacttttatcTTTCTTGGCTGCCACAGTTTACTGTGA
AGAGAGCCAAGAAGTGGAAGAAATTCAAGATGAGCCAATGGAAATTCAAG
ATGAACCAATGACAGCTCAAGAAGATGAAGTTGAGGAAGATGAAATCGAA
GGAATTCAAGActatgaagaagaagaagacatTGACGAAACTGAAGAAAA
tgACGCCAAAAAACCACCTAAACCTAAAAAGGCGGTCAAAACTAAAGTTT
ACGTGGAAAAAAACAAGAATGCTGGAGAATGCAAACAAGTGTAAGAAATT
GCGAATCCAAAAATTCTGCAAATTTACTTTCAAGAAAGAATGCAAAGTCT
GTTCCCGATTCTATTTCAAAACATGCACTAAGAAGCAAGGGTCACCTACG
TTATCATGCAAAAAGGGACCATTACAACCCCGACAATGTGCAAGGAAAAT
CGTTGGTCATGGGTCTGTTGTGAAAGTCGTCGACACAAAACACCAAGCTG
TATAATTACAACAATGACATCGAAAGGAGGTTTTTCCATTTTGTAAATTA
TTATTTCTAGGTTTCTAGGTGCAGGGTCCAACTATTTACTATGATTATCT
TTGTACAATCACTTCTGATTTTAAATACATCGCATGCTTTCAGGGAGAAA
GTTATCATCGTGTCCTATTGTGTACTTTTTCCTTTGCTTCGATCAAGCTT
agccaattttaagaaaaataagaagacCTTTTGAGATACAGACATTCCaa
tcgaaaaagttttttatccctttaagtgccacggtctttttttctaagtt
ctTTTCAAAATCACTAATGCAAACTCTAAAGGCATATATCTctggatcta
gaaggagttagaagctcgtccatagctcgttggatagcttagagtcgctg
cgcggacctgactgaatgatggaaaggtgcccagtggtaaagtTTCAAAT
CAATTCGCTAAAGGacagaataaaataaaacagGGCCatatttggaggtt
cttggatcactcgttgaccaaaaatggtcaactggttgcattttttgact
tttttttagcttaaaatctcgctgtaAAGACTcactttggaatttttttt
gcttaaccaTGAAGCACAATCCAATGTCTACGAGTTaggccaaaaatgac
gatttctaactctaTCTGGACTCAAAGTGgacttttgtcaaaaaatatac
ttgacatgggcacggaaagggttataTTAAATTCCATTTAAAATAATTAT
ACACTAGTTCTTATTTTGCTTTCACTTCTCGACTTGTTTTTCAACTCTCA
TTATATGACAGTATTTTCAATATATCTGAAGTCTGTCTCTTTTCTACtag
ctttaaaaatatttgaaaatatttgaatcttGCTGATTCTAAATcggctt
tcattttttttgtatatttcttaaACCATAGTCACTATAAAAACTATGGT
CGgtcaatgtattgttttagcttttatGTCAN
Run BLAST on NCBI

protein sequence of TCONS_00047653-protein

>TCONS_00047653-protein ID=TCONS_00047653-protein|Name=TCONS_00047653-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MKLRKMKSKEFKTMKKKKTLTKLKKMTPKNHLNLKRRSKLKFTWKKTRML
ENANKCKKLRIQKFCKFTFKKECKVCSRFYFKTCTKKQGSPTLSCKKGPL
QPRQCARKIVGHGSVVKVVDTKHQAV
Run BLAST on NCBI

transcript from alignment at scaffold_133:518017..520132+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047653 ID=TCONS_00047653|Name=TCONS_00047653|organism=Clytia hemisphaerica|type=transcript|length=2116bp|location=Sequence derived from alignment at scaffold_133:518017..520132+ (Clytia hemisphaerica)
CTTAAAAGGTATAAATAGTTGGTAGAATTTCCAGAAAATCATCCTCTTTC
AAATTCATCATTTAACAAGAAGAAAACAAAGCAACATCAGAATGAAGATT
TGGAaagttttattacttttatcTTTCTTGGCTGCCACAGTTTACTGTAA
GTACTTTGAATTTGTTACTGAAACTTATTGTATAAGAAAAGCGGGCGGGT
CTAAGGACGCTTTGAAATAGCGTGGAAACCAAGTCTGCGAAATCATCATG
AAAGAAAAATGATTgatcttgttttgattttactgaagaGCATGATGgtt
ttaaaaaataatcctGTTACTCCTTCTTAAAACACAAGGTGAAGAGAGCC
AAGAAGTGGAAGAAATTCAAGATGAGCCAATGGAAATTCAAGATGAACCA
ATGACAGCTCAAGAAGATGAAGTTGAGGAAGATGAAATCGAAGGAATTCA
AGActatgaagaagaagaagacatTGACGAAACTGAAGAAAAtggtgaga
aaaaaatcttgttcactttaaaatttcatccttttttcttcagaaataaT
GTATAAATACACAAAGAATGAAATCTGTTGTACTTTCGACGTCTATTTCA
TACGATTTTTAGTCGATTTGAGTATCCATAATCGAAAGGGCGTAATTAGC
ATAAAGTTGTCAGTAAAATTAGTCAATAGCTGTTACTTAACCATCTTTTC
ACTAATTTAGACGCCAAAAAACCACCTAAACCTAAAAAGGCGGTCAAAAC
TAAAGTTTACGTGGAAAAAAACAAGAATGCTGGAGAATGCAAACATGTCC
ATGTCAAACGTACCAAACACTGTTTCGTCAAGAAAGTTTGCATCCACAAA
GTCAACCACAAGTGTAAGAAATTGCGAATCCAAAAATTCTGCAAATTTAC
TTTCAAGAAAGAATGCAAAGTCTGTTCCCGATTCTATTTCAAAACATGCA
CTAAGAAGCAAGGGTCACCTACGTTATCATGCAAAAAGGGACCATTACAA
CCCCGACAATGTGCAAGGAAAATCGTTGGTCATGGGTCTGTTGTGAAAGT
CGTCGACACAAAACACCAAGCTGTATAATTACAACAATGACATCGAAAGG
AGGTTTTTCCATTTTGTAAATTATTATTTCTAGGTTTCTAGGTGCAGGGT
CCAACTATTTACTATGATTATCTTTGTACAATCACTTCTGATTTTAAATA
CATCGCATGCTTTCAGGGAGAAAGTTATCATCGTGTCCTATTGTGTACTT
TTTCCTTTGCTTCGATCAAGCTTagccaattttaagaaaaataagaagac
CTTTTGAGATACAGACATTCCaatcgaaaaagttttttatccctttaagt
gccacggtctttttttctaagttctTTTCAAAATCACTAATGCAAACTCT
AAAGGCATATATCTctggatctagaaggagttagaagctcgtccatagct
cgttggatagcttagagtcgctgcgcggacctgactgaatgatggaaagg
tgcccagtggtaaagtTTCAAATCAATTCGCTAAAGGacagaataaaata
aaacagGGCCatatttggaggttcttggatcactcgttgaccaaaaatgg
tcaactggttgcattttttgacttttttttagcttaaaatctcgctgtaA
AGACTcactttggaattttttttgcttaaccaTGAAGCACAATCCAATGT
CTACGAGTTaggccaaaaatgacgatttctaactctaTCTGGACTCAAAG
TGgacttttgtcaaaaaatatacttgacatgggcacggaaagggttataT
TAAATTCCATTTAAAATAAGTATACACTANATACTTGACatgggcacgga
aagggttataTTAAATTCCATTTAAAATAATTATACACTAGTTCTTATTT
TGCTTTCACTTCTCGACTTGTTTTTCAACTCTCATTATATGACAGTATTT
TCAATATATCTGAAGTCTGTCTCTTTTCTACtagctttaaaaatatttga
aaatatttgaatcttGCTGATTCTAAATcggctttcattttttttgtata
tttcttaaACCATAGTCACTATAAAAACTATGGTCGgtcaatgtattgtt
ttagcttttatGTCAN

Coding sequence (CDS) from alignment at scaffold_133:518017..520132+

>TCONS_00047653 ID=TCONS_00047653|Name=TCONS_00047653|organism=Clytia hemisphaerica|type=CDS|length=1143bp|location=Sequence derived from alignment at scaffold_133:518017..520132+ (Clytia hemisphaerica)
ATGAAGTTGAGGAAGATGAAATCGAAGGAATTCAAGActatgaagaagaa
gaagacatTGACGAAACTGAAGAAAAtgACGCCAAAAAACCACCTAAACC
TAAAAAGGCGGTCAAAACTAAAGTTTACGTGGAAAAAAACAAGAATGCTG
GAGAATGCAAACAAGTGTAAGAAATTGCGAATCCAAAAATTCTGCAAATT
TACTTTCAAGAAAGAATGCAAAGTCTGTTCCCGATTCTATTTCAAAACAT
GCACTAAGAAGCAAGGGTCACCTACGTTATCATGCAAAAAGGGACCATTA
CAACCCCGACAATGTGCAAGGAAAATCGTTGGTCATGGGTCTGTTGTGAA
AGTCGTCGACACAAAACACCAAGCTGTATAAATGAAGTTGAGGAAGATGA
AATCGAAGGAATTCAAGActatgaagaagaagaagacatTGACGAAACTG
AAGAAAAtgACGCCAAAAAACCACCTAAACCTAAAAAGGCGGTCAAAACT
AAAGTTTACGTGGAAAAAAACAAGAATGCTGGAGAATGCAAACAAGTGTA
AGAAATTGCGAATCCAAAAATTCTGCAAATTTACTTTCAAGAAAGAATGC
AAAGTCTGTTCCCGATTCTATTTCAAAACATGCACTAAGAAGCAAGGGTC
ACCTACGTTATCATGCAAAAAGGGACCATTACAACCCCGACAATGTGCAA
GGAAAATCGTTGGTCATGGGTCTGTTGTGAAAGTCGTCGACACAAAACAC
CAAGCTGTATAAATGAAGTTGAGGAAGATGAAATCGAAGGAATTCAAGAc
tatgaagaagaagaagacatTGACGAAACTGAAGAAAAtgACGCCAAAAA
ACCACCTAAACCTAAAAAGGCGGTCAAAACTAAAGTTTACGTGGAAAAAA
ACAAGAATGCTGGAGAATGCAAACAAGTGTAAGAAATTGCGAATCCAAAA
ATTCTGCAAATTTACTTTCAAGAAAGAATGCAAAGTCTGTTCCCGATTCT
ATTTCAAAACATGCACTAAGAAGCAAGGGTCACCTACGTTATCATGCAAA
AAGGGACCATTACAACCCCGACAATGTGCAAGGAAAATCGTTGGTCATGG
GTCTGTTGTGAAAGTCGTCGACACAAAACACCAAGCTGTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030347XLOC_030347Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047653-proteinTCONS_00047653-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047653-exon-scaffold_133-1491911889:518017..518162TCONS_00047653-exon-scaffold_133-1491911889:518017..518162Clytia hemisphaericaexon
TCONS_00047653-exon-scaffold_133-1510915933:518017..518162TCONS_00047653-exon-scaffold_133-1510915933:518017..518162Clytia hemisphaericaexon
TCONS_00047653-exon-scaffold_133-1575043694:518017..518162TCONS_00047653-exon-scaffold_133-1575043694:518017..518162Clytia hemisphaericaexon
TCONS_00047653-exon-scaffold_133-1491911889:518355..518510TCONS_00047653-exon-scaffold_133-1491911889:518355..518510Clytia hemisphaericaexon
TCONS_00047653-exon-scaffold_133-1510915933:518355..518510TCONS_00047653-exon-scaffold_133-1510915933:518355..518510Clytia hemisphaericaexon
TCONS_00047653-exon-scaffold_133-1575043694:518355..518510TCONS_00047653-exon-scaffold_133-1575043694:518355..518510Clytia hemisphaericaexon
TCONS_00047653-exon-scaffold_133-1491911889:518727..518810TCONS_00047653-exon-scaffold_133-1491911889:518727..518810Clytia hemisphaericaexon
TCONS_00047653-exon-scaffold_133-1510915933:518727..518810TCONS_00047653-exon-scaffold_133-1510915933:518727..518810Clytia hemisphaericaexon
TCONS_00047653-exon-scaffold_133-1575043694:518727..518810TCONS_00047653-exon-scaffold_133-1575043694:518727..518810Clytia hemisphaericaexon
TCONS_00047653-exon-scaffold_133-1491911889:518876..519794TCONS_00047653-exon-scaffold_133-1491911889:518876..519794Clytia hemisphaericaexon
TCONS_00047653-exon-scaffold_133-1510915933:518876..519794TCONS_00047653-exon-scaffold_133-1510915933:518876..519794Clytia hemisphaericaexon
TCONS_00047653-exon-scaffold_133-1575043694:518876..519794TCONS_00047653-exon-scaffold_133-1575043694:518876..519794Clytia hemisphaericaexon
TCONS_00047653-exon-scaffold_133-1491911889:519856..520132TCONS_00047653-exon-scaffold_133-1491911889:519856..520132Clytia hemisphaericaexon
TCONS_00047653-exon-scaffold_133-1510915933:519856..520132TCONS_00047653-exon-scaffold_133-1510915933:519856..520132Clytia hemisphaericaexon
TCONS_00047653-exon-scaffold_133-1575043694:519856..520132TCONS_00047653-exon-scaffold_133-1575043694:519856..520132Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:518017..520132 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0519614	0.181358	0.346693	0.464018	0.174231	0.255224	477.113	553.674	2474.7	1954.46	355.575	1389.31	0.230976	0.300586	0.206034	0.110496	0.360034	0.122324	6.81567	0.532961	0.126264	0.184989	0.0594024	0.0541182	0.417518	0.322994	0.215327	0.0381984	0.144988	0.0594134
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047653 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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