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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047659 ID=TCONS_00047659|Name=TCONS_00047659|organism=Clytia hemisphaerica|type=transcript|length=2372bpRun BLAST on NCBI protein sequence of TCONS_00047659-protein >TCONS_00047659-protein ID=TCONS_00047659-protein|Name=TCONS_00047659-protein|organism=Clytia hemisphaerica|type=polypeptide|length=600bp MGQQASKELNDEIQISSTISKKLVNDPSQCVTESLQGFVMTNPDVKLLEGRun BLAST on NCBI transcript from alignment at scaffold_133:113523..134178- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047659 ID=TCONS_00047659|Name=TCONS_00047659|organism=Clytia hemisphaerica|type=transcript|length=20656bp|location=Sequence derived from alignment at scaffold_133:113523..134178- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_133:113523..134178- >TCONS_00047659 ID=TCONS_00047659|Name=TCONS_00047659|organism=Clytia hemisphaerica|type=CDS|length=28848bp|location=Sequence derived from alignment at scaffold_133:113523..134178- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047659 vs. Swiss-Prot (Human)
Match: TKFC (Triokinase/FMN cyclase OS=Homo sapiens GN=TKFC PE=1 SV=2) HSP 1 Score: 402.905 bits (1034), Expect = 9.117e-130 Identity = 240/572 (41.96%), Postives = 337/572 (58.92%), Query Frame = 3
Query: 96 SKKLVNDPSQCVTESLQGFVMTNPDVKLLEGHNVVVRADLADFRESNKVALITGGGSGHEPAHVGFIGKGMLTSAVCGDIFTSPTSISILDTIRSCANKGG-SALLIVKNYTGDRLNFGKAAEIAKGDGIDVEMVVVADDCALTSQDKSAGRRGLCGTILIHKMAGAMSEQGKSLNEMAQFLREAVKEIGTISISLSPCSIPGKPVNFTIDDDAVEFGLGIHGEAGVSKIKIGTANELVSKMLQHVRNS---GYLPEVKDKEVALVVNNLGGTSNLELTLVAREAVNLLTSNNVKVSRCYVGTYVTSMEMAGVSLSIMILNENRKEYLDAPCDAPAWKSGGLLNDVDNLTIPCFEND-----DDGKTADSFDVKPEGTGLIAYYSLKKICQKIIENEEKLNELDRSCGDGDTGTTFARAAKEISKRLEDQEHVRYPINDASQLSSQLANTLETFMXXXXXXXXXXXXXXXXXXXXHDEVSTTKSLICAFELGLNAIKKYGGAEEGDRTMIDALSPALESFKTSQQQNLDXXXXXXXXXXXXXNGTNETAKMKAKAGRASYTAESNMLHPDPG 1784
SKKLVN + C ++L G V NP+++LL+GH V +R+DL + +VAL++GGGSGHEPAH GFIGKGMLT + G +FTSP SIL IR+ A G LLIVKNYTGDRLNFG A E A+ +GI VEMVV+ DD A T K AGRRGLCGT+LIHK+AGA++E G L E+A+ + K +GT+ +SLS CS+PG F + D VE GLGIHGEAGV +IK+ TA+E+V ML H+ N+ ++P V ++VNNLGG S LEL ++A V L VK++R VGT+++++EM G+SL++++++E + +DA A AW +V ++I + + + DS + +A L+++C ++ EE LN LDR+ GDGD GTT +RAA+ I + L++ P + A LS LE G S AA ++ + A + GL A++KYG A GDRTM+D+L A + + + D + L +A +A T M+A AGRASY + + + PDPG
Sbjct: 3 SKKLVNSVAGCADDALAGLVACNPNLQLLQGHRVALRSDLDSLK--GRVALLSGGGSGHEPAHAGFIGKGMLTGVIAGAVFTSPAVGSILAAIRAVAQAGTVGTLLIVKNYTGDRLNFGLAREQARAEGIPVEMVVIGDDSAFTVLKK-AGRRGLCGTVLIHKVAGALAEAGVGLEEIAKQVNVVAKAMGTLGVSLSSCSVPGSKPTFELSADEVELGLGIHGEAGVRRIKMATADEIVKLMLDHMTNTTNASHVPVQPGSSVVMMVNNLGGLSFLELGIIADATVRSLEGRGVKIARALVGTFMSALEMPGISLTLLLVDEPLLKLIDAETTAAAWP------NVAAVSITGRKRSRVAPAEPQEAPDSTAAGGSASKRMALV-LERVCSTLLGLEEHLNALDRAAGDGDCGTTHSRAARAIQEWLKEGPP---PASPAQLLSKLSVLLLEKMGGSSGALYGLFLTAAAQPLKAK---TSLPAWSAAMDAGLEAMQKYGKAAPGDRTMLDSLWAAGQELQAWKSPGADLLQVLTKAVKSAEAAAEATKNMEAGAGRASYISSARLEQPDPG 558 The following BLAST results are available for this feature:
BLAST of TCONS_00047659 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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