TCONS_00047664 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047664
Unique NameTCONS_00047664
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length748

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047664 ID=TCONS_00047664|Name=TCONS_00047664|organism=Clytia hemisphaerica|type=transcript|length=748bp
CTTTACTTTGTTAAGGAAGCAACAATGGCGGATATGTTTTTGGTTGGTGT
TTATGGTTTCATTTTCACATCTTTCGTTGTCAGTATCGTCTTGTTAAAAC
TGCAAcgtaaaaaaatgttcaaagcTGCTGAAACGTTCTATAAATACGCT
GAATGGATTGTCTGGTTTACTGCACCGACATATTTCTTGTTATTGTACTA
CCTCCGCATCAGCATTTATGAAACATTACTGACCGTTCTGTTAGAGATAT
TTCTAGTAGCAACTGTTATTACGTTATCAAGTTACATCAGAGACCGGTGG
AAGTTCACTGCACGTACGAAGAAAGGATATACACAAGCCGCTGAAATATG
TGTGACGTCACCCGAACAGGACCACAGTCTAGTGCGAAAGAAGGGAGGAG
GAGGAAGATACCGGGCTAGATCAGAATCATCATTTCAAGAAGATTGATAA
ATGATattgtttttcttcaaagactCAAACGTAAGGCTAAGGGAcactag
gctgctggcatccactaacggattcttGCTCCCtgtactacctggggttt
tgtaaaggtctgcgattcagactaaaggGACACACGTTTTAAATGACTTT
TAACTTTTGACTCGAGGTAGATATTTTCAGATAGTTGATTAATTGGATTT
ATAAAGAGGTAAGCAAGTAGTCCGGGAGGGGGGTTTGGTAACTATTTGAG
TAGTGTACATTTCTAAtaattgttaaccggttactttttcgaagcggg
Run BLAST on NCBI

protein sequence of TCONS_00047664-protein

>TCONS_00047664-protein ID=TCONS_00047664-protein|Name=TCONS_00047664-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
LYFVKEATMADMFLVGVYGFIFTSFVVSIVLLKLQRKKMFKAAETFYKYA
EWIVWFTAPTYFLLLYYLRISIYETLLTVLLEIFLVATVITLSSYIRDRW
KFTARTKKGYTQAAEICVTSPEQDHSLVRKKGGGGRYRARSESSFQED
Run BLAST on NCBI

transcript from alignment at scaffold_133:218794..221928-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047664 ID=TCONS_00047664|Name=TCONS_00047664|organism=Clytia hemisphaerica|type=transcript|length=3135bp|location=Sequence derived from alignment at scaffold_133:218794..221928- (Clytia hemisphaerica)
CTTTACTTTGTTAAGGAAGCAACAATGGCGGATATGTTTTTGGTTGGTGT
TTATGGTTTCATTTTCACATCTTTCGTTGTCAGTATCGTCTTGTTAAAAC
TGCAACGTAAAAAAATGTTCAAAGCTGCTGAAACGTTCTATAAATACGCT
GAATGGATTGTAAGTGTAAAAAATAATTGATTCCTCTCTCGTTTTATGCC
TGCTTAAAGTACAGTGAAGTCTCCATAATTCTAACCTCTATAACTCGAAC
AAGTTTTCGTGTCTGTTCAGGTAACAATGCCTTGAAAACTAGTCTGCATA
ACTCGAAATTCCCTTAGTTATGATCCCTACAGATAACAATACCGTACCTC
CGTACCTCGAAATTTGTGTTATCGAGTTATGGAGACTCGACTGTAGCATG
TCAATGAGTTTTGGCGGTTTATCTCGTCTTGATAACTTTGTTCCTTTTCA
TATTTTTTCTGGTCTGTGATCTATAGACACTTTTAAAAAATTCATCACCT
CCGAAGGGCAGGCTCTATGGTTTGTTAATTCTTAGTTAAGGTAAAAATGT
TTTCTGAGATGTACATTTTGCAGACCAGAAAAGATAAGAGAGAAATAAAA
AGTTGGCCCTTGCAGAATAGCCTGACTTACGAAGACTTTGCACGGTCATA
GAGAGGTTTTCGTGTAAGGGACCTCTACAGAAACGAACATCTCCTTCCAT
AATGGCGAAAATTAGCTAACTTAACAAAAAAATCTCTATTGTTTTATATT
TTCACAGGTCTGGTTTACTGCACCGACATATTTCTTGTTATTGTACTACC
TCCGCATCAGCATTTATGAAACATTACTGACCGTTCTGTTAGAGATATTT
CTAGTAGCAACTGTTATTACGTTATCAAGTTACATCAGGTATGGACTAGC
TGGAAAGATTTTTGACCCCAATTTTGAGGAGGTCATTTTTTGAAAGCACC
AACCAAACCCCCTGGTATTTTAACAGATAAATAAGATATATTTTTTGGAA
TTCGGACGAAACTTCAGAGGCTCCCTAGATATTTGTCTTTATTTAAGAAA
ATTTTAATTTTGAGAGACACTTTAAAGTCTGTCCAAATATGATTGGCAGT
GGAAACAAGAATGCCTGTAACTTTTGATAGTCAAATATAATTATAAAAAT
TATTTTTGCTTGCTTTAGAGAATCAAAAGCGCTATATTTGAATGTATTTT
TGGTTGAAAAATTCGCGATTTTTAGCGGTTAAATTAGCGATTGTAAAAAT
TGAGCTCTTTTTTTTACTTATGCTACAACATTCATTTTTACACCAGTGGT
AGTTCAACCTTAGGTTAAGAAGTTTGTTAAATTTCAAGGCAAACAGAAAA
GTCCTTCGGAAGATATGGGACCCGAAATACCCCTTGGTAGCACTTTTCTG
TGAAATCTCCAACTTATTACTAAAAACGGGGTTATGCTATCTTTTTTGAA
CAGTGCAATTAAAAATTGGAAAATGTTAAGTGTTGGTGCATTGGTATTAT
TGGTATCATTGATTATTTCGAAACGAAGTGAAATCACAGTATAANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAATG
AAAGTTATAGCATAAGTAGAAAAAAAGCTAAATTTTTACAATCGCAAATT
TAACCGCTAAAAATCGCGAATTTTTCAACCAAAAGTACATTCAATATAGC
GCTTTTGATTCTCTAAAACAAGCAAAAAAAATTTCCATAATTATATTTGA
CTATCAAAAGTTACTGGCATTCTTGTTTCCACTGCCAATTATATCTGGAC
AGACTTTAGTTTGGTTTAACTATTCAGATTCCCAAGGTGAGACACGATCA
ACATGGTCATGGTCTACACGTTTTTAAAAGAACATCCTATTTTTTTTGAT
TTTTTCTTAATGTGTTCTTAAATTCACCATTTGTGAGTATTTCCAAAAAA
TTGGGAGTGTTTTAAAGTCCGCCTTAAAATGTGCTTAACTTGTTCTTAAT
ATTTTGGCAATCGAAGCCTTACAAAACGTGTTTCCTTATCAAAGAGTAAT
ATCAAAATATTATTACATAATTTTCAGAGACCGGTGGAAGTTCACTGCAC
GTACGAAGAAAGGATATACACAAGCCGCTGAAATATGTGTGACGTCACCC
GAACAGGACCACAGTCTAGTGCGAAAGAAGGGAGGAGGAGGAAGATACCG
GGCTAGATCAGAATCATCATTTCAAGAAGATTGATAAATGATATTGTTTT
TCTTCAAAGACTCAAACGTAAGGCTAAGGGACACTAGGCTGCTGGCATCC
ACTAACGGATTCTTGCTCCCTGTACTACCTGGGGTTTTGTAAAGGTCTGC
GATTCAGACTAAAGGGACACACGTTTTAAATGACTTTTAACTTTTGACTC
GAGGTAGATATTTTCAGATAGTTGATTAATTGGATTTATAAAGAGGTAAG
CAAGTAGTCCGGGAGGGGGGTTTGGTAACTATTTGAGTAGTGTACATTTC
TAATAATTGTTAACCGGTTACTTTTTCGAAGCGGG

Coding sequence (CDS) from alignment at scaffold_133:218794..221928-

>TCONS_00047664 ID=TCONS_00047664|Name=TCONS_00047664|organism=Clytia hemisphaerica|type=CDS|length=1341bp|location=Sequence derived from alignment at scaffold_133:218794..221928- (Clytia hemisphaerica)
AGACCGGTGGAAGTTCACTGCACGTACGAAGAAAGGATATACACAAGCCG
CTGAAATATGTGTGACGTCACCCGAACAGGACCACAGTCTAGTGCGAAAG
AAGGGAGGAGGAGGAAGATACCGGGCTAGATCAGAATCATCATTTCAAGA
AGATTGAGTCTGGTTTACTGCACCGACATATTTCTTGTTATTGTACTACC
TCCGCATCAGCATTTATGAAACATTACTGACCGTTCTGTTAGAGATATTT
CTAGTAGCAACTGTTATTACGTTATCAAGTTACATCAGCTTTACTTTGTT
AAGGAAGCAACAATGGCGGATATGTTTTTGGTTGGTGTTTATGGTTTCAT
TTTCACATCTTTCGTTGTCAGTATCGTCTTGTTAAAACTGCAACGTAAAA
AAATGTTCAAAGCTGCTGAAACGTTCTATAAATACGCTGAATGGATTAGA
CCGGTGGAAGTTCACTGCACGTACGAAGAAAGGATATACACAAGCCGCTG
AAATATGTGTGACGTCACCCGAACAGGACCACAGTCTAGTGCGAAAGAAG
GGAGGAGGAGGAAGATACCGGGCTAGATCAGAATCATCATTTCAAGAAGA
TTGAGTCTGGTTTACTGCACCGACATATTTCTTGTTATTGTACTACCTCC
GCATCAGCATTTATGAAACATTACTGACCGTTCTGTTAGAGATATTTCTA
GTAGCAACTGTTATTACGTTATCAAGTTACATCAGCTTTACTTTGTTAAG
GAAGCAACAATGGCGGATATGTTTTTGGTTGGTGTTTATGGTTTCATTTT
CACATCTTTCGTTGTCAGTATCGTCTTGTTAAAACTGCAACGTAAAAAAA
TGTTCAAAGCTGCTGAAACGTTCTATAAATACGCTGAATGGATTAGACCG
GTGGAAGTTCACTGCACGTACGAAGAAAGGATATACACAAGCCGCTGAAA
TATGTGTGACGTCACCCGAACAGGACCACAGTCTAGTGCGAAAGAAGGGA
GGAGGAGGAAGATACCGGGCTAGATCAGAATCATCATTTCAAGAAGATTG
AGTCTGGTTTACTGCACCGACATATTTCTTGTTATTGTACTACCTCCGCA
TCAGCATTTATGAAACATTACTGACCGTTCTGTTAGAGATATTTCTAGTA
GCAACTGTTATTACGTTATCAAGTTACATCAGCTTTACTTTGTTAAGGAA
GCAACAATGGCGGATATGTTTTTGGTTGGTGTTTATGGTTTCATTTTCAC
ATCTTTCGTTGTCAGTATCGTCTTGTTAAAACTGCAACGTAAAAAAATGT
TCAAAGCTGCTGAAACGTTCTATAAATACGCTGAATGGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030352XLOC_030352Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047664-proteinTCONS_00047664-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047664-exon-scaffold_133-1575043694:221770..221928TCONS_00047664-exon-scaffold_133-1575043694:221770..221928Clytia hemisphaericaexon
TCONS_00047664-exon-scaffold_133-1575043694:221041..221171TCONS_00047664-exon-scaffold_133-1575043694:221041..221171Clytia hemisphaericaexon
TCONS_00047664-exon-scaffold_133-1575043694:218794..219251TCONS_00047664-exon-scaffold_133-1575043694:218794..219251Clytia hemisphaericaexon
TCONS_00047664-exon-scaffold_133-1510915933:221770..221928TCONS_00047664-exon-scaffold_133-1510915933:221770..221928Clytia hemisphaericaexon
TCONS_00047664-exon-scaffold_133-1510915933:221041..221171TCONS_00047664-exon-scaffold_133-1510915933:221041..221171Clytia hemisphaericaexon
TCONS_00047664-exon-scaffold_133-1510915933:218794..219251TCONS_00047664-exon-scaffold_133-1510915933:218794..219251Clytia hemisphaericaexon
TCONS_00047664-exon-scaffold_133-1491911889:221770..221928TCONS_00047664-exon-scaffold_133-1491911889:221770..221928Clytia hemisphaericaexon
TCONS_00047664-exon-scaffold_133-1491911889:221041..221171TCONS_00047664-exon-scaffold_133-1491911889:221041..221171Clytia hemisphaericaexon
TCONS_00047664-exon-scaffold_133-1491911889:218794..219251TCONS_00047664-exon-scaffold_133-1491911889:218794..219251Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:218794..221928 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.83275	6.03351	2.38484	3.35397	7.89998	7.29481	3.72345	3.99634	3.16159	3.26258	3.36252	1.97265	1.9894	1.97406	2.01828	3.289	2.76707	2.78551	0.769666	0.8054	2.10012	2.14185	7.01867	6.24376	4.38151	4.09961	1.53432	1.63747	4.53325	4.09382
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047664 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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