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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047674 ID=TCONS_00047674|Name=TCONS_00047674|organism=Clytia hemisphaerica|type=transcript|length=5086bpRun BLAST on NCBI protein sequence of TCONS_00047674-protein >TCONS_00047674-protein ID=TCONS_00047674-protein|Name=TCONS_00047674-protein|organism=Clytia hemisphaerica|type=polypeptide|length=722bp MGEVDKSQYVIPNDVPVCLLQCSKAFNALENKEKLYCHYLSKACEQGGLIRun BLAST on NCBI transcript from alignment at scaffold_133:367478..395372- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047674 ID=TCONS_00047674|Name=TCONS_00047674|organism=Clytia hemisphaerica|type=transcript|length=27895bp|location=Sequence derived from alignment at scaffold_133:367478..395372- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_133:367478..395372- >TCONS_00047674 ID=TCONS_00047674|Name=TCONS_00047674|organism=Clytia hemisphaerica|type=CDS|length=36873bp|location=Sequence derived from alignment at scaffold_133:367478..395372- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047674 vs. Swiss-Prot (Human)
Match: DPP3 (Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2) HSP 1 Score: 781.171 bits (2016), Expect = 0.000e+0 Identity = 384/716 (53.63%), Postives = 509/716 (71.09%), Query Frame = 1
Query: 106 SQYVIPNDVPVCLLQCSKAFNALENKEKLYCHYLSKACEQGGLIVLLQTSPESVPVFLLLQKIFHNETVESLQTKSLDAGVSEYDFKALLAFAAGFYCNMGNYKSFGDTKIVPDIPQESFEKVMKVSTAYQSNKAWFDEVWSACSDDMYDLQSRRRELGIAQKGVSTYYSSNITEEDIAFVQEFMKDQGMTDPYNTRLFKNDDGS----FQLRLASIATEEKYDDLDKIHPMIGKRHLFKEKSIQIIRGDYSALLRRSVEELRKAKEYAANDMEAQMLENYIKCFTYGSIEAHKEGSKFWVKDKGPIVETYLGFIESYRDPSGVRGEYEGFVSIVDKEMSRKFGTLVEQAEQLLAFLPWPKEYEKDKFLRPDFTSLDVVTFAGSGIPAGINIPNYDDIRQDFGFKNVSLGNVLAANPSGV--KITFLSQEDEELYTKYKGPSFEVQVGLHELLGHGSGKLFQQNKDGSFNFDAENVLHLETKEKVKNWYHPGETWDTKFGSLASSYEECRAECVGLLLCLNNTVLSIFGHKDEVAEDIIYVNWLNMVRAGLLGLQFYSPETESWKQAHMNARYVILQVLMEADSSLVSIENVTGEDGEPDLLIKMNREKIKTTGKEAIANFLMRLQLYKATADVEAGHAMYKKYSTVG----ERMLKERVTVLRRKQPRRLFIQCNTAATAGEKDVSLREYETTCSGMIQSNIERYLEHDAELEQL 2223
+QY++PND+ V L C +AF L E+LY ++LS+A GGL VLLQTSPE+ ++ LL ++F + + L+ +L G++E +++A L +AAG Y NMGNYKSFGDTK VP++P+E E+V+ S A Q + +W C + M+ L+ R R LG+ ++G++TY+S N T ED Q+F+ Q ++ YNTRLFK DG +++RLAS+ E D + + K + F+ Q+ RGDY+ +L++ VE+L KAK YAAN + QML YI+ FT GSIEAHK GS+FW++DKGPIVE+Y+GFIESYRDP G RGE+EGFV++V+K MS KF LV AEQLL LPWP +EKDKFL PDFTSLDV+TFAGSGIPAGINIPNYDD+RQ GFKNVSLGNVLA + K+TFL ++D++LY +KGPSF+VQVGLHELLGHGSGKLF Q++ G+FNFD E V++ ET E++++WY GETWD+KF ++ASSYEECRAE VGL LCL+ VL IFG + AED+IYVNWLNMVRAGLL L+FY+PE +W+QAHM AR+VIL+VL+EA LV+I TG DG PD ++++R KI++ GK A+ FL RLQ+ K+T DV G A+Y+ Y+TV E L R TVL RK+ R+L +Q NT DV L EYE + +G+I+S ER+ E ELE++
Sbjct: 4 TQYILPNDIGVSSLDCREAFRLLSPTERLYAYHLSRAAWYGGLAVLLQTSPEAPYIYALLSRLFRAQDPDQLRQHALAEGLTEEEYQAFLVYAAGVYSNMGNYKSFGDTKFVPNLPKEKLERVILGSEAAQQHPEEVRGLWQTCGELMFSLEPRLRHLGLGKEGITTYFSGNCTMEDAKLAQDFLDSQNLS-AYNTRLFKEVDGEGKPYYEVRLASVLGSEPSLDSEVTSKL--KSYEFRGSPFQVTRGDYAPILQKVVEQLEKAKAYAANSHQGQMLAQYIESFTQGSIEAHKRGSRFWIQDKGPIVESYIGFIESYRDPFGSRGEFEGFVAVVNKAMSAKFERLVASAEQLLKELPWPPTFEKDKFLTPDFTSLDVLTFAGSGIPAGINIPNYDDLRQTEGFKNVSLGNVLAVAYATQREKLTFLEEDDKDLYILWKGPSFDVQVGLHELLGHGSGKLFVQDEKGAFNFDQETVINPETGEQIQSWYRSGETWDSKFSTIASSYEECRAESVGLYLCLHPQVLEIFGFEGADAEDVIYVNWLNMVRAGLLALEFYTPEAFNWRQAHMQARFVILRVLLEAGEGLVTITPTTGSDGRPDARVRLDRSKIRSVGKPALERFLRRLQVLKSTGDVAGGRALYEGYATVTDAPPECFLTLRDTVLLRKESRKLIVQPNTRLEG--SDVQLLEYEASAAGLIRSFSERFPEDGPELEEI 714 The following BLAST results are available for this feature:
BLAST of TCONS_00047674 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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