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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047681 ID=TCONS_00047681|Name=TCONS_00047681|organism=Clytia hemisphaerica|type=transcript|length=688bp GTCGACGGATGTTGATCATAGCGTGCATTTTATGCTATTCAATCTTTATC TACTCTATAGTCCTTCTTATTTGCGTCCGAAAGACACTCTATGGTTGGAT GACTGTACCTAGTTTGTTGACAGCGCTATTGTGTTCATCCATCTTCGTTA TCATTTTGAAGAACATTCTATCTCCTTCCACCACCTTCATTACTGGCGAG TCAAAAATCATCAATCTAAAAGATTATGTCATGGGCTGGTCATTCTACTA TTTTGTGTTTGGTTATTTATTCTTGGTAACTTCAATGTTCTTCACACTCA AAGACAAAGACAAAGGAAGAACATGGAATAATTCAGTTACACCAATGATT GGGGCAATTAGCCCTCCCGATGATTTGGACCTACATTCAAGCCATCCATC TCACGAATGATGATCTTTTCTCTAGTGAGGCAAGAGAAGCATGAAACTTA TGTTGTTGAGATTGATgtgaaattcatttcatttaaaacaTTATTTTACT CGATTTTATCTTCTCTTCCCCATTTTCATCgtctatttttaatttttagt gaATTGTATTACTTCAAGTAAAATGTCCGAATCTGGTATTTAGGAGGGAT TTTATTCTTATTATCGTATATGTAGGCTTCCCTTATATTcacgatatgca ccattgcaatgtcttctgacattacatcatggtcccaa Run BLAST on NCBI protein sequence of TCONS_00047681-protein >TCONS_00047681-protein ID=TCONS_00047681-protein|Name=TCONS_00047681-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
RRMLIIACILCYSIFIYSIVLLICVRKTLYGWMTVPSLLTALLCSSIFVI ILKNILSPSTTFITGESKIINLKDYVMGWSFYYFVFGYLFLVTSMFFTLK DKDKGRTWNNSVTPMIGAISPPDDLDLHSSHPSHE Run BLAST on NCBI transcript from alignment at scaffold_133:460130..464973- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047681 ID=TCONS_00047681|Name=TCONS_00047681|organism=Clytia hemisphaerica|type=transcript|length=4844bp|location=Sequence derived from alignment at scaffold_133:460130..464973- (Clytia hemisphaerica) GTCGACGGATGTTGATCATAGCGTGCATTTTATGCTATTCAATCTTTATC
TACTCTATAGTCCTTCTTATTTGCGTCCGAAAGACACTCTATGGTTGGAT
GACTGTACCTAGTTTGTTGACAGGTAAGGGATTTCTCTGCATGGTATGTT
ATCACATGTCTCACAGCCCCGGTGGAGCTTTTTCTCTCCTGGGGATAAAA
ATTCTTATTGGGAATGTCAATGGGGATGCAAATTCTATTGCTCCAAGTTA
GAAATATCCAGTGGAGATGGATTTGGAGTGCGATTCTTAAATATTGGATT
TCGAGTGGGGATGAAATCAAAATCAATTTTCCAGTGGGGCTGAAATTCCA
GGGTATTTTCTCACCGGAGACAAAATTTTTGGCAAATTTTCCAGTGGACC
TGAGGTCCCAGCGAGTCTCTGACACAGGGGTGTGTTATCGGTCAGCCGGT
TAAACAGCAGTCAAAGCCTTATTAAATTTTATTTATCAGTTTTAAGGCTC
ACAGGGTGATGTAAGTGTTGACTGAATTATTTGTATACTTTAAACTTCTT
GCTCTTTGTATGGAATGTTGATTACTATACCCAGAATGCAATTCTCATAA
AGAATGTGCGTGGTCGTGAGAGATTATTGTAATCCATGCTCGCGATGATC
AATTCTGCTGGAAATATATGTTTTTTACTTCATATCATGCTTTTTTGAGA
GGCCCGGAATCTTCGAGTTAGAAAACTTCGAGTTGGCAATTTTCGAGTTA
TCAATTTTCGAGTTAGCTAAATTATGACGTCATGAAAGTGCAAATTATGA
CGTCACTCGACTCTAACTCGATTTTTTATTTTCAAAAAATAATTTTCGAG
TTAGAATTAACTTGAATTTTATTTTTCGAAAAAACATTTTCGAGTTAGCT
AACTCGGATTTCTTTTTCACAAAACCTTTTTTCGAGTTAGCTAGCTCGGA
ATTTATTTTTCGTTCACAAGTTTTCGAGTTAGCTATCTTGGAATTTTTTG
TATGGTAGTAGAAAAATCCAGAAAATTTCGAAAAGGTAGGCGGAAGGAAG
TTTGCTTGTTTTTCTTCCTCCTTTCTTCTTGTTTAATGTGGAGTGGAGAT
TTTGTAAAAGATGAGAAATTAGATTTATAAATTATTGAATTTAAGTGCCC
TGATGTATCTAATGTGTGCACCAACAAAAATCCAGATAATTGTTTTGTCA
GTTCTACAGATATGTTGCAGATTATTTCAAGGTATGTTAGTTATGTATAT
ACCATATATACAATACATTTGAGACTTATATTGAATATTTCTAACATTAT
TTCTTTGTGATTCTACAAATTCAAAAGAGAGTGTTATTGTTCCTTTTTAA
AGATGTTAAAACAAACCAATAACTTTTCTTCAGCTTTGGCATTTCCCTTT
TCGATACTGCGTGGCCTTTGTGTTTATCTTTTTCAGGTACGCAGGTAATT
AGCTTCTCGCTTAGCTTCAATTCCTTTGAAGAGATTGGAGTGTTTTTTTT
TTGTTTTCTTTCCTTTTGTTCATATTTGTATTTTGGAGCTTCGACCGTAG
ATGGTAGAGCTAAGAATTCGAATTTCCAAACTAACACTCGAATTATGAAT
AAAAACATTCCAATTTTTATGAATAAAAACATTCGAATTTTGAATAAAAC
CATTCGAATTTTTAGGATTTACCTACTACCACCACACAAAAAAAATTTCA
AATTAACTTTTTCTAAAAAAATCCAAGATAGCTAACTCGAAAACTTGTGA
GCGAAAAATAAATTCCGAGTTAGCTAACTCGAAAAAAGGTTTTGTGAAAA
AGAAATTCGAGTTAGCTAACTCGAAAAAGTTTTTTCGAAAAATAAAATTC
GAGTTAATTTTAACTCGAAAAATATTTTTAGAAAATCAAAAATCGAGTTA
GAGTCGAGTGACGTCATAATTTGCACTTTTATGACGTCATAATTTAGCTA
ACTCGAAAATTCCTAACTCGAAAATCGCTAACTCGAAGTTTTCTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGACCTC
AAACTGAACGCTATTGTTATAATATTGAAAGTCACTGTCAACAAGAAACT
CTCTTAAACGACGCTCTCTTATTCGATATGTTCCCTTGTTCGATGAAAAT
CCGATTCCCCATGAAGATCAAACTAGAAAGCGTTAAATGTACTAAAAGTT
TCTTGCTTTCTAAAGCATCCTCAATTAGTTTTAAAAATTCTCGATTGTTT
TTTTAGGATTCCTTGCAATCTGTCGACGGATGTTGATCATAGCGTGCATT
TTATGCTATTCAATCTTTATCTACTCTATAGTCCTTCTTATTTGCGTCCG
AAAGACACTCTATGGTTGGATGACTGTACCTAGTTTGTTGACAGGTAAGG
GATTTCTCTGCATGGTATGTTATCACATGTCTCACAGCCCCGGTGGAGCT
TTTTCTCTCCTGGGGATAAAAATTCTTATTGGGAATGTCAATGGGGATGC
AAATTCTATTGCTCCAAGTTAGAAATATCCAGTGGAGATGGATTTGGAGT
GCGATTCTTAAATATTGGATTTCGAGTGGGGATGAAATCAAAATCAATTT
TCCAGTGGGGCTGAAATTCCAGGGTATTTTCTCACCGGAGACAAAATTTT
TGGCAAATTTTCCAGTGGACCTGAGGTCCCAGCGAGTCTCTGACACAGGG
GTGTGTTATCGGTCAGCCGGTTAAACAGCAGTCAAAGCCTTATTAAATTT
TATTTATCAGTTTTAAGGCTCACAGGGTGATGTAAGTGTTGACTGAATTA
TTTGTATACTTTAAACTTCTTGCTCTTTGTATGGAATGTTGATTATTATA
CCCAGAATGCAATTCTAATAAAGAATGTGCGTGGTCGTGGGAGATTATTG
TAATCCATGCTCGCGATGATCAATTCTGCTGAAAATATATGTTTTTTACT
TCGTATCATGCTTTTTTGATAATCATAACTAATAGCTCCCAAATTTTACA
GAGATAGCAAATTTGTAGTGGTAATATCTGATAACATAACAAGGGACTTT
CCATTGAAATTAGGTTCCCTTCAATTTATCCCTATAAGCTAAACATTCTC
TCTACAATCCAGGACAAATATGTTTGAGAATCACTGAAAATTGTTGCAAA
AGCGCCATTGGGGGAGTGACGTTTAAACGCTCTACTCTCGTCTCATCATT
CATTTAAGTCCACGATTGTAGATCATTGAGACAGGGGTGTAATATTCTCA
CAATATTCTCAATACTCTTCTCATTTCAGCGCTATTGTGTTCATCCATCT
TCGTTATCATTTTGAAGAACATTCTATCTCCTTCCACCACCTTCATTACT
GGCGAGTCAAAAATCATCAATCTAAAAGATTATGTCATGGGCTGGTCATT
CTACTATTTTGTGTTTGGTTATTTATTCTTGGTAACTTCAATGTTCTTCA
CACTCAAAGACAAAGACAAAGGAAGAACATGGAATAATTCAGTTACACCA
ATGATTGGGGCAATTAGCCCTCCCGATGATTTGGACCTACATTCAAGCCA
TCCATCTCACGAATGATGATCTTTTCTCTAGTGAGGCAAGAGAAGCATGA
AACTTATGTTGTTGAGATTGATGTGAAATTCATTTCATTTAAAACATTAT
TTTACTCGATTTTATCTTCTCTTCCCCATTTTCATCGTCTATTTTTAATT
TTTAGTGAATTGTATTACTTCAAGTAAAATGTCCGAATCTGGTATTTAGG
AGGGATTTTATTCTTATTATCGTATATGTAGGCTTCCCTTATATTCACGA
TATGCACCATTGCAATGTCTTCTGACATTACATCATGGTCCCAA Coding sequence (CDS) from alignment at scaffold_133:460130..464973- >TCONS_00047681 ID=TCONS_00047681|Name=TCONS_00047681|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_133:460130..464973- (Clytia hemisphaerica) CGCTATTGTGTTCATCCATCTTCGTTATCATTTTGAAGAACATTCTATCT CCTTCCACCACCTTCATTACTGGCGAGTCAAAAATCATCAATCTAAAAGA TTATGTCATGGGCTGGTCATTCTACTATTTTGTGTTTGGTTATTTATTCT TGGTAACTTCAATGTTCTTCACACTCAAAGACAAAGACAAAGGAAGAACA TGGAATAATTCAGTTACACCAATGATTGGGGCAATTAGCCCTCCCGATGA TTTGGACCTACATTCAAGCCATCCATCTCACGAATGACGACGGATGTTGA TCATAGCGTGCATTTTATGCTATTCAATCTTTATCTACTCTATAGTCCTT CTTATTTGCGTCCGAAAGACACTCTATGGTTGGATGACTGTACCTAGTTT GTTGACAGCGCTATTGTGTTCATCCATCTTCGTTATCATTTTGAAGAACA TTCTATCTCCTTCCACCACCTTCATTACTGGCGAGTCAAAAATCATCAAT CTAAAAGATTATGTCATGGGCTGGTCATTCTACTATTTTGTGTTTGGTTA TTTATTCTTGGTAACTTCAATGTTCTTCACACTCAAAGACAAAGACAAAG GAAGAACATGGAATAATTCAGTTACACCAATGATTGGGGCAATTAGCCCT CCCGATGATTTGGACCTACATTCAAGCCATCCATCTCACGAATGACGACG GATGTTGATCATAGCGTGCATTTTATGCTATTCAATCTTTATCTACTCTA TAGTCCTTCTTATTTGCGTCCGAAAGACACTCTATGGTTGGATGACTGTA CCTAGTTTGTTGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00047681-exon-scaffold_133-1575043694:464851..464973 | TCONS_00047681-exon-scaffold_133-1575043694:464851..464973 | Clytia hemisphaerica | exon |
TCONS_00047681-exon-scaffold_133-1575043694:460130..460694 | TCONS_00047681-exon-scaffold_133-1575043694:460130..460694 | Clytia hemisphaerica | exon |
TCONS_00047681-exon-scaffold_133-1510915933:464851..464973 | TCONS_00047681-exon-scaffold_133-1510915933:464851..464973 | Clytia hemisphaerica | exon |
TCONS_00047681-exon-scaffold_133-1510915933:460130..460694 | TCONS_00047681-exon-scaffold_133-1510915933:460130..460694 | Clytia hemisphaerica | exon |
TCONS_00047681-exon-scaffold_133-1491911889:464851..464973 | TCONS_00047681-exon-scaffold_133-1491911889:464851..464973 | Clytia hemisphaerica | exon |
TCONS_00047681-exon-scaffold_133-1491911889:460130..460694 | TCONS_00047681-exon-scaffold_133-1491911889:460130..460694 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_133 | supercontig | scaffold_133:460130..464973 - |
Blast
The following BLAST results are available for this feature:
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