TCONS_00047681 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047681
Unique NameTCONS_00047681
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length688

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047681 ID=TCONS_00047681|Name=TCONS_00047681|organism=Clytia hemisphaerica|type=transcript|length=688bp
GTCGACGGATGTTGATCATAGCGTGCATTTTATGCTATTCAATCTTTATC
TACTCTATAGTCCTTCTTATTTGCGTCCGAAAGACACTCTATGGTTGGAT
GACTGTACCTAGTTTGTTGACAGCGCTATTGTGTTCATCCATCTTCGTTA
TCATTTTGAAGAACATTCTATCTCCTTCCACCACCTTCATTACTGGCGAG
TCAAAAATCATCAATCTAAAAGATTATGTCATGGGCTGGTCATTCTACTA
TTTTGTGTTTGGTTATTTATTCTTGGTAACTTCAATGTTCTTCACACTCA
AAGACAAAGACAAAGGAAGAACATGGAATAATTCAGTTACACCAATGATT
GGGGCAATTAGCCCTCCCGATGATTTGGACCTACATTCAAGCCATCCATC
TCACGAATGATGATCTTTTCTCTAGTGAGGCAAGAGAAGCATGAAACTTA
TGTTGTTGAGATTGATgtgaaattcatttcatttaaaacaTTATTTTACT
CGATTTTATCTTCTCTTCCCCATTTTCATCgtctatttttaatttttagt
gaATTGTATTACTTCAAGTAAAATGTCCGAATCTGGTATTTAGGAGGGAT
TTTATTCTTATTATCGTATATGTAGGCTTCCCTTATATTcacgatatgca
ccattgcaatgtcttctgacattacatcatggtcccaa
Run BLAST on NCBI

protein sequence of TCONS_00047681-protein

>TCONS_00047681-protein ID=TCONS_00047681-protein|Name=TCONS_00047681-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
RRMLIIACILCYSIFIYSIVLLICVRKTLYGWMTVPSLLTALLCSSIFVI
ILKNILSPSTTFITGESKIINLKDYVMGWSFYYFVFGYLFLVTSMFFTLK
DKDKGRTWNNSVTPMIGAISPPDDLDLHSSHPSHE
Run BLAST on NCBI

transcript from alignment at scaffold_133:460130..464973-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047681 ID=TCONS_00047681|Name=TCONS_00047681|organism=Clytia hemisphaerica|type=transcript|length=4844bp|location=Sequence derived from alignment at scaffold_133:460130..464973- (Clytia hemisphaerica)
GTCGACGGATGTTGATCATAGCGTGCATTTTATGCTATTCAATCTTTATC
TACTCTATAGTCCTTCTTATTTGCGTCCGAAAGACACTCTATGGTTGGAT
GACTGTACCTAGTTTGTTGACAGGTAAGGGATTTCTCTGCATGGTATGTT
ATCACATGTCTCACAGCCCCGGTGGAGCTTTTTCTCTCCTGGGGATAAAA
ATTCTTATTGGGAATGTCAATGGGGATGCAAATTCTATTGCTCCAAGTTA
GAAATATCCAGTGGAGATGGATTTGGAGTGCGATTCTTAAATATTGGATT
TCGAGTGGGGATGAAATCAAAATCAATTTTCCAGTGGGGCTGAAATTCCA
GGGTATTTTCTCACCGGAGACAAAATTTTTGGCAAATTTTCCAGTGGACC
TGAGGTCCCAGCGAGTCTCTGACACAGGGGTGTGTTATCGGTCAGCCGGT
TAAACAGCAGTCAAAGCCTTATTAAATTTTATTTATCAGTTTTAAGGCTC
ACAGGGTGATGTAAGTGTTGACTGAATTATTTGTATACTTTAAACTTCTT
GCTCTTTGTATGGAATGTTGATTACTATACCCAGAATGCAATTCTCATAA
AGAATGTGCGTGGTCGTGAGAGATTATTGTAATCCATGCTCGCGATGATC
AATTCTGCTGGAAATATATGTTTTTTACTTCATATCATGCTTTTTTGAGA
GGCCCGGAATCTTCGAGTTAGAAAACTTCGAGTTGGCAATTTTCGAGTTA
TCAATTTTCGAGTTAGCTAAATTATGACGTCATGAAAGTGCAAATTATGA
CGTCACTCGACTCTAACTCGATTTTTTATTTTCAAAAAATAATTTTCGAG
TTAGAATTAACTTGAATTTTATTTTTCGAAAAAACATTTTCGAGTTAGCT
AACTCGGATTTCTTTTTCACAAAACCTTTTTTCGAGTTAGCTAGCTCGGA
ATTTATTTTTCGTTCACAAGTTTTCGAGTTAGCTATCTTGGAATTTTTTG
TATGGTAGTAGAAAAATCCAGAAAATTTCGAAAAGGTAGGCGGAAGGAAG
TTTGCTTGTTTTTCTTCCTCCTTTCTTCTTGTTTAATGTGGAGTGGAGAT
TTTGTAAAAGATGAGAAATTAGATTTATAAATTATTGAATTTAAGTGCCC
TGATGTATCTAATGTGTGCACCAACAAAAATCCAGATAATTGTTTTGTCA
GTTCTACAGATATGTTGCAGATTATTTCAAGGTATGTTAGTTATGTATAT
ACCATATATACAATACATTTGAGACTTATATTGAATATTTCTAACATTAT
TTCTTTGTGATTCTACAAATTCAAAAGAGAGTGTTATTGTTCCTTTTTAA
AGATGTTAAAACAAACCAATAACTTTTCTTCAGCTTTGGCATTTCCCTTT
TCGATACTGCGTGGCCTTTGTGTTTATCTTTTTCAGGTACGCAGGTAATT
AGCTTCTCGCTTAGCTTCAATTCCTTTGAAGAGATTGGAGTGTTTTTTTT
TTGTTTTCTTTCCTTTTGTTCATATTTGTATTTTGGAGCTTCGACCGTAG
ATGGTAGAGCTAAGAATTCGAATTTCCAAACTAACACTCGAATTATGAAT
AAAAACATTCCAATTTTTATGAATAAAAACATTCGAATTTTGAATAAAAC
CATTCGAATTTTTAGGATTTACCTACTACCACCACACAAAAAAAATTTCA
AATTAACTTTTTCTAAAAAAATCCAAGATAGCTAACTCGAAAACTTGTGA
GCGAAAAATAAATTCCGAGTTAGCTAACTCGAAAAAAGGTTTTGTGAAAA
AGAAATTCGAGTTAGCTAACTCGAAAAAGTTTTTTCGAAAAATAAAATTC
GAGTTAATTTTAACTCGAAAAATATTTTTAGAAAATCAAAAATCGAGTTA
GAGTCGAGTGACGTCATAATTTGCACTTTTATGACGTCATAATTTAGCTA
ACTCGAAAATTCCTAACTCGAAAATCGCTAACTCGAAGTTTTCTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGACCTC
AAACTGAACGCTATTGTTATAATATTGAAAGTCACTGTCAACAAGAAACT
CTCTTAAACGACGCTCTCTTATTCGATATGTTCCCTTGTTCGATGAAAAT
CCGATTCCCCATGAAGATCAAACTAGAAAGCGTTAAATGTACTAAAAGTT
TCTTGCTTTCTAAAGCATCCTCAATTAGTTTTAAAAATTCTCGATTGTTT
TTTTAGGATTCCTTGCAATCTGTCGACGGATGTTGATCATAGCGTGCATT
TTATGCTATTCAATCTTTATCTACTCTATAGTCCTTCTTATTTGCGTCCG
AAAGACACTCTATGGTTGGATGACTGTACCTAGTTTGTTGACAGGTAAGG
GATTTCTCTGCATGGTATGTTATCACATGTCTCACAGCCCCGGTGGAGCT
TTTTCTCTCCTGGGGATAAAAATTCTTATTGGGAATGTCAATGGGGATGC
AAATTCTATTGCTCCAAGTTAGAAATATCCAGTGGAGATGGATTTGGAGT
GCGATTCTTAAATATTGGATTTCGAGTGGGGATGAAATCAAAATCAATTT
TCCAGTGGGGCTGAAATTCCAGGGTATTTTCTCACCGGAGACAAAATTTT
TGGCAAATTTTCCAGTGGACCTGAGGTCCCAGCGAGTCTCTGACACAGGG
GTGTGTTATCGGTCAGCCGGTTAAACAGCAGTCAAAGCCTTATTAAATTT
TATTTATCAGTTTTAAGGCTCACAGGGTGATGTAAGTGTTGACTGAATTA
TTTGTATACTTTAAACTTCTTGCTCTTTGTATGGAATGTTGATTATTATA
CCCAGAATGCAATTCTAATAAAGAATGTGCGTGGTCGTGGGAGATTATTG
TAATCCATGCTCGCGATGATCAATTCTGCTGAAAATATATGTTTTTTACT
TCGTATCATGCTTTTTTGATAATCATAACTAATAGCTCCCAAATTTTACA
GAGATAGCAAATTTGTAGTGGTAATATCTGATAACATAACAAGGGACTTT
CCATTGAAATTAGGTTCCCTTCAATTTATCCCTATAAGCTAAACATTCTC
TCTACAATCCAGGACAAATATGTTTGAGAATCACTGAAAATTGTTGCAAA
AGCGCCATTGGGGGAGTGACGTTTAAACGCTCTACTCTCGTCTCATCATT
CATTTAAGTCCACGATTGTAGATCATTGAGACAGGGGTGTAATATTCTCA
CAATATTCTCAATACTCTTCTCATTTCAGCGCTATTGTGTTCATCCATCT
TCGTTATCATTTTGAAGAACATTCTATCTCCTTCCACCACCTTCATTACT
GGCGAGTCAAAAATCATCAATCTAAAAGATTATGTCATGGGCTGGTCATT
CTACTATTTTGTGTTTGGTTATTTATTCTTGGTAACTTCAATGTTCTTCA
CACTCAAAGACAAAGACAAAGGAAGAACATGGAATAATTCAGTTACACCA
ATGATTGGGGCAATTAGCCCTCCCGATGATTTGGACCTACATTCAAGCCA
TCCATCTCACGAATGATGATCTTTTCTCTAGTGAGGCAAGAGAAGCATGA
AACTTATGTTGTTGAGATTGATGTGAAATTCATTTCATTTAAAACATTAT
TTTACTCGATTTTATCTTCTCTTCCCCATTTTCATCGTCTATTTTTAATT
TTTAGTGAATTGTATTACTTCAAGTAAAATGTCCGAATCTGGTATTTAGG
AGGGATTTTATTCTTATTATCGTATATGTAGGCTTCCCTTATATTCACGA
TATGCACCATTGCAATGTCTTCTGACATTACATCATGGTCCCAA

Coding sequence (CDS) from alignment at scaffold_133:460130..464973-

>TCONS_00047681 ID=TCONS_00047681|Name=TCONS_00047681|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_133:460130..464973- (Clytia hemisphaerica)
CGCTATTGTGTTCATCCATCTTCGTTATCATTTTGAAGAACATTCTATCT
CCTTCCACCACCTTCATTACTGGCGAGTCAAAAATCATCAATCTAAAAGA
TTATGTCATGGGCTGGTCATTCTACTATTTTGTGTTTGGTTATTTATTCT
TGGTAACTTCAATGTTCTTCACACTCAAAGACAAAGACAAAGGAAGAACA
TGGAATAATTCAGTTACACCAATGATTGGGGCAATTAGCCCTCCCGATGA
TTTGGACCTACATTCAAGCCATCCATCTCACGAATGACGACGGATGTTGA
TCATAGCGTGCATTTTATGCTATTCAATCTTTATCTACTCTATAGTCCTT
CTTATTTGCGTCCGAAAGACACTCTATGGTTGGATGACTGTACCTAGTTT
GTTGACAGCGCTATTGTGTTCATCCATCTTCGTTATCATTTTGAAGAACA
TTCTATCTCCTTCCACCACCTTCATTACTGGCGAGTCAAAAATCATCAAT
CTAAAAGATTATGTCATGGGCTGGTCATTCTACTATTTTGTGTTTGGTTA
TTTATTCTTGGTAACTTCAATGTTCTTCACACTCAAAGACAAAGACAAAG
GAAGAACATGGAATAATTCAGTTACACCAATGATTGGGGCAATTAGCCCT
CCCGATGATTTGGACCTACATTCAAGCCATCCATCTCACGAATGACGACG
GATGTTGATCATAGCGTGCATTTTATGCTATTCAATCTTTATCTACTCTA
TAGTCCTTCTTATTTGCGTCCGAAAGACACTCTATGGTTGGATGACTGTA
CCTAGTTTGTTGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030362XLOC_030362Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047681-proteinTCONS_00047681-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047681-exon-scaffold_133-1575043694:464851..464973TCONS_00047681-exon-scaffold_133-1575043694:464851..464973Clytia hemisphaericaexon
TCONS_00047681-exon-scaffold_133-1575043694:460130..460694TCONS_00047681-exon-scaffold_133-1575043694:460130..460694Clytia hemisphaericaexon
TCONS_00047681-exon-scaffold_133-1510915933:464851..464973TCONS_00047681-exon-scaffold_133-1510915933:464851..464973Clytia hemisphaericaexon
TCONS_00047681-exon-scaffold_133-1510915933:460130..460694TCONS_00047681-exon-scaffold_133-1510915933:460130..460694Clytia hemisphaericaexon
TCONS_00047681-exon-scaffold_133-1491911889:464851..464973TCONS_00047681-exon-scaffold_133-1491911889:464851..464973Clytia hemisphaericaexon
TCONS_00047681-exon-scaffold_133-1491911889:460130..460694TCONS_00047681-exon-scaffold_133-1491911889:460130..460694Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:460130..464973 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0380009	0.0369719	0.0860354	0.183797	0.101984	0.0805476	0.728732	0.913329	1.25076	1.27971	1.24549	1.19076	0.024691	0	0.021173	0	0	0.0289372	0.239565	0	0.109457	0.107566	0.043409	0.15906	0.0797335	0.0355232	0.15582	0.12648	0.0847146	0.0858554
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047681 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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