TCONS_00047688 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047688
Unique NameTCONS_00047688
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length622

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047688 ID=TCONS_00047688|Name=TCONS_00047688|organism=Clytia hemisphaerica|type=transcript|length=622bp
gatattatcgattaaaaatctaTGGTGATAATTTAATTGAGTGctaaaaa
ttgattaattatcGATTAGCTATCAATTTTATTGATTAGTAACACCTGGT
ACTAATTATAAACTTTCCCGGCAAAAGGTCTAGCAAAAGGTCTTCCTTCC
TTCCATCACCCTTTTTTCCATCATCATCActtttttagagataggaataa
aaAGAAGGTCCTAATAATCAAGGACTgaaaaaagatgttgaaagCTGAGA
AATAAAGTTTCAACCGGTTGGCAAACggtatcatactccaggatgcaagt
gaaatttttcaatctgcggacctagacgggggttagGTTATTATCAGTAA
GGGTTAGGGTCGGAGCTCGAAAGTCACAATATATTATATAGGGGCATTCC
TTCCCTGAAACTTAACTTAGGATCCTGTAGAGATCGTGGGGGCACTGATA
GGGTTGGGAGCCTTGTTAAGGTCTATAAATTACatgctataagtatttgt
gaatgacagcatTCTGTTGTGTCTCGTTGATGCAATCTGTTAGGCATtat
tgggtttgtaaaccaagggcTTGCATTTAGTGGTTAGACCCAAGGTAGGG
GGCCTATTTCACCAGTaagggc
Run BLAST on NCBI

transcript from alignment at scaffold_133:142554..143175

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047688 ID=TCONS_00047688|Name=TCONS_00047688|organism=Clytia hemisphaerica|type=transcript|length=622bp|location=Sequence derived from alignment at scaffold_133:142554..143175 (Clytia hemisphaerica)
gcccttACTGGTGAAATAGGCCCCCTACCTTGGGTCTAACCACTAAATGC
AAgcccttggtttacaaacccaataATGCCTAACAGATTGCATCAACGAG
ACACAACAGAatgctgtcattcacaaatacttatagcatGTAATTTATAG
ACCTTAACAAGGCTCCCAACCCTATCAGTGCCCCCACGATCTCTACAGGA
TCCTAAGTTAAGTTTCAGGGAAGGAATGCCCCTATATAATATATTGTGAC
TTTCGAGCTCCGACCCTAACCCTTACTGATAATAACctaacccccgtcta
ggtccgcagattgaaaaatttcacttgcatcctggagtatgataccGTTT
GCCAACCGGTTGAAACTTTATTTCTCAGctttcaacatcttttttcAGTC
CTTGATTATTAGGACCTTCTttttattcctatctctaaaaaagTGATGAT
GATGGAAAAAAGGGTGATGGAAGGAAGGAAGACCTTTTGCTAGACCTTTT
GCCGGGAAAGTTTATAATTAGTACCAGGTGTTACTAATCAATAAAATTGA
TAGCTAATCgataattaatcaatttttagCACTCAATTAAATTATCACCA
tagatttttaatcgataatatc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030367XLOC_030367Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047688-exon-scaffold_133-1491911889:142554..143175TCONS_00047688-exon-scaffold_133-1491911889:142554..143175Clytia hemisphaericaexon
TCONS_00047688-exon-scaffold_133-1510915933:142554..143175TCONS_00047688-exon-scaffold_133-1510915933:142554..143175Clytia hemisphaericaexon
TCONS_00047688-exon-scaffold_133-1575043694:142554..143175TCONS_00047688-exon-scaffold_133-1575043694:142554..143175Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:142554..143175 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.456396	0.416323	0.567542	1.50543	0.151586	0.199507	0.634017	0.392504	0	0.212579	0.201095	0.348321	0.432397	0.339322	0.0704748	0.392539	0.23192	0.387525	0.736577	0.428713	0.617773	0.320621	0	0.106901	0.139139	0.237378	0.288462	0.290916	0	0.102088
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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