TCONS_00047693 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047693
Unique NameTCONS_00047693
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length802

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047693 ID=TCONS_00047693|Name=TCONS_00047693|organism=Clytia hemisphaerica|type=transcript|length=802bp
aaatcacgaccctttgagagaggaattttagaatttcgtgatttttggac
ccttacaCAGAGTCAACtttcttttaatgtttttttgtacccctttgaga
gactttcgagggtgtgaaaaagggaccgtTATGActtgcacatacccggc
acccattttgcccaAGTACCACCCTCCCCCGGGTTTACTGAACACATAAA
ATTGAACTTTGAGTTAAatcataagtaagtaagtttgcgaccgcagtcga
gggtgACTCGGAGGCTtccttttctctagctgtctaaCCGATCAGGGGAA
GACGCCACtgctttccctggatttctccacttacccttgacccgTCTCtt
tagcatgaaggtagagcatcaagtacgagaggcatcaagtaccatgcgcg
ccgtagctggatgctctaccttcatgccaCGACCGCATTTAATCATATTG
CGCTGAACCAAGCACTCTTCACCCAATTCGTCACGACACATTCACAGTCA
AAGTTACAGACCTCTAAAAAAAGTCTAAATGggtgataatttgataaaaa
ttgtcGAAATGGACCTATTGCCTAAGGCTATTTTTATGAATGTGTAAAAA
GTTTGAGAAATTattctttttgaaaagaagGCCCGCGATGTTTTCATCCA
CCATATCGACTCGAGAAGAGTTCGTTGCACAATATTTTAGGTTATCTTAA
AACCTAACAATTGCGCGAGTGATTGAAGAGCATAAATTTAACTTTACCAT
CGAACCATCAAACCATAAAGTGTTAAAAACCTCAATTTTCCGTaactaga
aa
Run BLAST on NCBI

transcript from alignment at scaffold_133:227757..228558

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047693 ID=TCONS_00047693|Name=TCONS_00047693|organism=Clytia hemisphaerica|type=transcript|length=802bp|location=Sequence derived from alignment at scaffold_133:227757..228558 (Clytia hemisphaerica)
tttctagttACGGAAAATTGAGGTTTTTAACACTTTATGGTTTGATGGTT
CGATGGTAAAGTTAAATTTATGCTCTTCAATCACTCGCGCAATTGTTAGG
TTTTAAGATAACCTAAAATATTGTGCAACGAACTCTTCTCGAGTCGATAT
GGTGGATGAAAACATCGCGGGCcttcttttcaaaaagaatAATTTCTCAA
ACTTTTTACACATTCATAAAAATAGCCTTAGGCAATAGGTCCATTTCgac
aatttttatcaaattatcaccCATTTAGACTTTTTTTAGAGGTCTGTAAC
TTTGACTGTGAATGTGTCGTGACGAATTGGGTGAAGAGTGCTTGGTTCAG
CGCAATATGATTAAATGCGGTCGtggcatgaaggtagagcatccagctac
ggcgcgcatggtacttgatgcctctcgtacttgatgctctaccttcatgc
taaaGAGAcgggtcaagggtaagtggagaaatccagggaaagcaGTGGCG
TCTTCCCCTGATCGGttagacagctagagaaaaggaAGCCTCCGAGTcac
cctcgactgcggtcgcaaacttacttacttatgatTTAACTCAAAGTTCA
ATTTTATGTGTTCAGTAAACCCGGGGGAGGGTGGTACTtgggcaaaatgg
gtgccgggtatgtgcaagTCATAacggtccctttttcacaccctcgaaag
tctctcaaaggggtacaaaaaaacattaaaagaaaGTTGACTCTGtgtaa
gggtccaaaaatcacgaaattctaaaattcctctctcaaagggtcgtgat
tt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030372XLOC_030372Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047693-exon-scaffold_133-1491911889:227757..228558TCONS_00047693-exon-scaffold_133-1491911889:227757..228558Clytia hemisphaericaexon
TCONS_00047693-exon-scaffold_133-1510915933:227757..228558TCONS_00047693-exon-scaffold_133-1510915933:227757..228558Clytia hemisphaericaexon
TCONS_00047693-exon-scaffold_133-1575043694:227757..228558TCONS_00047693-exon-scaffold_133-1575043694:227757..228558Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:227757..228558 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.23931	0.525072	1.62576	2.05446	0.485912	0.38253	0.769178	0.720095	0.151247	0.124896	0.0606133	0.398448	0.596841	0.878139	0.679441	0.437487	0.224562	0.184135	0.445186	0.732058	0.289223	0.338575	0	0.375207	0.513874	0.229621	0.164071	0.262651	0.132808	0.0676551
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047693 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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