TCONS_00047697 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047697
Unique NameTCONS_00047697
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length264

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047697 ID=TCONS_00047697|Name=TCONS_00047697|organism=Clytia hemisphaerica|type=transcript|length=264bp
attatttaaaaaagaatcgaataatagaagtacGAATTAATGAGAGTCTA
CTGTACAACTGCAGCGAGCGGTTTTTGAGTAACCTGATCTAGTTAGCTGG
GTTGGTGATATACAGTATGCGTGGTAATTAGTATCaaaattataattaaa
aaaacCTGTAAAATATGTGAATATGATGATATTGTGGATAGTTtggcttt
tttaagaacaaaactGACAAGCtaacacaattttttttaagaaaagaatA
TTATAATCTAAATT
Run BLAST on NCBI

transcript from alignment at scaffold_133:479726..479989

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047697 ID=TCONS_00047697|Name=TCONS_00047697|organism=Clytia hemisphaerica|type=transcript|length=264bp|location=Sequence derived from alignment at scaffold_133:479726..479989 (Clytia hemisphaerica)
AATTTAGATTATAATattcttttcttaaaaaaaattgtgttaGCTTGTCa
gttttgttcttaaaaaagccaAACTATCCACAATATCATCATATTCACAT
ATTTTACAGgtttttttaattataattttGATACTAATTACCACGCATAC
TGTATATCACCAACCCAGCTAACTAGATCAGGTTACTCAAAAACCGCTCG
CTGCAGTTGTACAGTAGACTCTCATTAATTCgtacttctattattcgatt
cttttttaaataat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030376XLOC_030376Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047697-exon-scaffold_133-1491911889:479726..479989TCONS_00047697-exon-scaffold_133-1491911889:479726..479989Clytia hemisphaericaexon
TCONS_00047697-exon-scaffold_133-1510915933:479726..479989TCONS_00047697-exon-scaffold_133-1510915933:479726..479989Clytia hemisphaericaexon
TCONS_00047697-exon-scaffold_133-1575043694:479726..479989TCONS_00047697-exon-scaffold_133-1575043694:479726..479989Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:479726..479989 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.618291	0	0.70006	0.6849	0	1.31776	0.79491	2.97674	0.521022	1.29074	0	1.23533	3.70085	5.55153	2.4576	1.88384	0	1.42721	10.5161	2.75109	7.17358	7.8728	3.5446	4.51158	0.663831	4.14717	0	0.904794	0	0.699185
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047697 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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