TCONS_00047699 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047699
Unique NameTCONS_00047699
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length209

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047699 ID=TCONS_00047699|Name=TCONS_00047699|organism=Clytia hemisphaerica|type=transcript|length=209bp
atcggaagaaagataggaaatcggggaaatactACGAAAAGTAGTTTAAT
CGAGCAAGCTCTTGTCTTTGTTAACATTAACATgcgtaaaaaaaacacaa
aataaaaaatgaatgatcGAGAACAAACATGAATAATCGAGCCGGAAAAC
TGAATCGTGAGATTTTCCCTAGGTACTCCTCATTAAGGCGCCCTTGACGG
GCGCAATTA
Run BLAST on NCBI

transcript from alignment at scaffold_133:514891..515099

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047699 ID=TCONS_00047699|Name=TCONS_00047699|organism=Clytia hemisphaerica|type=transcript|length=209bp|location=Sequence derived from alignment at scaffold_133:514891..515099 (Clytia hemisphaerica)
TAATTGCGCCCGTCAAGGGCGCCTTAATGAGGAGTACCTAGGGAAAATCT
CACGATTCAGTTTTCCGGCTCGATTATTCATGTTTGTTCTCgatcattca
ttttttattttgtgttttttttacgcATGTTAATGTTAACAAAGACAAGA
GCTTGCTCGATTAAACTACTTTTCGTagtatttccccgatttcctatctt
tcttccgat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030378XLOC_030378Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047699-exon-scaffold_133-1491911889:514891..515099TCONS_00047699-exon-scaffold_133-1491911889:514891..515099Clytia hemisphaericaexon
TCONS_00047699-exon-scaffold_133-1510915933:514891..515099TCONS_00047699-exon-scaffold_133-1510915933:514891..515099Clytia hemisphaericaexon
TCONS_00047699-exon-scaffold_133-1575043694:514891..515099TCONS_00047699-exon-scaffold_133-1575043694:514891..515099Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:514891..515099 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.93824	0	2.43165	0	3.21379	1.41523	1.42459	3.6093	4.0058	0	1.51547	6.42348	3.53667	5.32237	1.66101	2.13681	7.24072	0	0	0	0	3.89205	3.39051	0	4.77575	1.90811	2.00549	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047699 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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